Wall clock time and date at job start Tue Mar 31 2020 14:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09004 * 109.46869 * 233.62543 * 3 2 1 5 5 N 1.46503 * 109.47220 * 353.62030 * 3 2 1 6 6 C 1.34781 * 120.00067 * 274.99995 * 5 3 2 7 7 O 1.21555 * 119.99709 * 0.02562 * 6 5 3 8 8 C 1.47877 * 120.00305 * 180.27261 * 6 5 3 9 9 C 1.39922 * 120.02233 * 359.45656 * 8 6 5 10 10 C 1.38332 * 120.35492 * 179.71407 * 9 8 6 11 11 C 1.37745 * 120.41415 * 0.55922 * 10 9 8 12 12 C 1.40750 * 120.04103 * 359.71744 * 11 10 9 13 13 C 1.41433 * 120.17941 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99860 * 150.17909 * 13 12 11 15 15 C 1.39933 * 120.00422 * 330.18777 * 13 12 11 16 16 N 1.30826 * 120.00531 * 161.72717 * 15 13 12 17 17 Si 1.86796 * 119.99681 * 341.72169 * 15 13 12 18 18 H 1.48498 * 109.47445 * 95.41498 * 17 15 13 19 19 H 1.48507 * 109.47200 * 215.41691 * 17 15 13 20 20 H 1.48503 * 109.47240 * 335.41491 * 17 15 13 21 21 C 1.38995 * 120.02597 * 179.72786 * 8 6 5 22 22 C 1.50695 * 109.47209 * 113.61834 * 3 2 1 23 23 C 1.38244 * 119.97865 * 279.72548 * 22 3 2 24 24 C 1.38191 * 120.02876 * 179.76830 * 23 22 3 25 25 C 1.38461 * 119.97329 * 0.50678 * 24 23 22 26 26 F 1.35102 * 120.02817 * 179.76923 * 25 24 23 27 27 C 1.38462 * 119.94606 * 359.74536 * 25 24 23 28 28 C 1.38196 * 119.97838 * 0.02562 * 27 25 24 29 29 H 4.18743 * 15.04002 * 359.97438 * 4 2 1 30 30 H 0.96990 * 120.00127 * 95.00142 * 5 3 2 31 31 H 1.08002 * 119.82078 * 359.96976 * 9 8 6 32 32 H 1.08001 * 119.78888 * 180.25380 * 10 9 8 33 33 H 1.08003 * 119.98022 * 179.74249 * 11 10 9 34 34 H 0.96994 * 120.00004 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.20415 * 359.97438 * 21 8 6 36 36 H 1.08000 * 119.98165 * 0.02562 * 23 22 3 37 37 H 1.07994 * 120.01628 * 180.25511 * 24 23 22 38 38 H 1.08006 * 120.00897 * 179.97438 * 27 25 24 39 39 H 1.07998 * 119.98771 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.6103 0.8275 5 7 3.1350 -1.3718 0.1535 6 6 3.2640 -1.9077 1.3834 7 8 2.9741 -1.2523 2.3653 8 6 3.7633 -3.2909 1.5387 9 6 4.0912 -4.0479 0.4085 10 6 4.5644 -5.3404 0.5461 11 6 4.7075 -5.9014 1.7960 12 6 4.3773 -5.1573 2.9442 13 6 4.5236 -5.7302 4.2290 14 1 4.7465 -5.1015 5.0784 15 6 4.3796 -7.1116 4.3998 16 7 4.8523 -7.6909 5.4734 17 14 3.5123 -8.1285 3.0948 18 1 4.5189 -8.7140 2.1734 19 1 2.7444 -9.2196 3.7469 20 1 2.5839 -7.2605 2.3268 21 6 3.9018 -3.8421 2.8072 22 6 3.1481 0.5701 -1.3017 23 6 3.1880 -0.2234 -2.4331 24 6 3.6437 0.2991 -3.6285 25 6 4.0704 1.6149 -3.6904 26 9 4.5205 2.1255 -4.8574 27 6 4.0349 2.4072 -2.5554 28 6 3.5743 1.8839 -1.3621 29 1 -1.0500 0.0000 -0.0008 30 1 3.3659 -1.8948 -0.6300 31 1 3.9781 -3.6192 -0.5763 32 1 4.8186 -5.9151 -0.3324 33 1 5.0737 -6.9126 1.8950 34 1 4.7521 -8.6483 5.5918 35 1 3.6462 -3.2629 3.6821 36 1 2.8589 -1.2508 -2.3836 37 1 3.6709 -0.3197 -4.5131 38 1 4.3678 3.4336 -2.6024 39 1 3.5461 2.5018 -0.4769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491805448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:31 Heat of formation + Delta-G solvation = 3.512410 kcal Electronic energy + Delta-G solvation = -24904.491792 eV Core-core repulsion = 21077.972371 eV Total energy + Delta-G solvation = -3826.519421 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.106 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.92441 -41.41551 -40.17809 -39.04164 -36.67759 -35.59292 -33.82415 -32.50473 -32.20252 -31.89021 -31.44271 -27.77025 -26.89297 -24.76600 -24.03030 -22.84324 -22.45752 -21.69399 -19.90196 -19.41726 -18.73677 -18.15979 -17.75212 -17.41895 -16.90128 -16.62037 -16.49777 -16.33753 -16.09358 -15.49680 -15.45380 -15.09176 -14.79593 -14.57949 -14.54101 -14.41882 -14.05105 -13.80729 -13.42396 -13.28023 -13.16545 -12.84352 -12.68926 -12.32117 -12.04279 -11.80897 -11.69752 -11.56619 -11.26937 -11.19803 -10.87362 -10.53301 -10.12791 -9.71267 -9.63916 -9.58901 -8.91803 -6.55722 -0.02202 0.14927 0.21333 0.73896 1.25630 1.41760 1.46826 1.48978 1.80030 1.91129 2.12114 2.38024 2.52977 2.64425 3.21865 3.38574 3.44672 3.65058 3.68659 3.85464 3.93172 4.16139 4.24619 4.27361 4.39913 4.48496 4.60563 4.84782 4.87749 4.89998 4.91335 4.99719 5.08976 5.13814 5.14619 5.19395 5.41237 5.44222 5.63142 5.70501 5.81846 5.84376 6.08854 6.29262 6.45334 6.60297 6.65179 6.73771 7.12340 8.17231 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.002683 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.282266 B =10433.877682 C =10982.652602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.237 4.237 3 C 0.302 3.698 4 H 0.106 0.894 5 N -0.704 5.704 6 C 0.568 3.432 7 O -0.576 6.576 8 C -0.113 4.113 9 C -0.182 4.182 10 C -0.081 4.081 11 C -0.224 4.224 12 C 0.066 3.934 13 C -0.488 4.488 14 H 0.050 0.950 15 C 0.045 3.955 16 N -0.849 5.849 17 Si 0.967 3.033 18 H -0.246 1.246 19 H -0.279 1.279 20 H -0.251 1.251 21 C -0.164 4.164 22 C -0.106 4.106 23 C -0.080 4.080 24 C -0.147 4.147 25 C 0.088 3.912 26 F -0.145 7.145 27 C -0.149 4.149 28 C -0.075 4.075 29 H 0.250 0.750 30 H 0.416 0.584 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.295 0.705 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 13.708 -21.321 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.238 4.238 3 C 0.198 3.802 4 H 0.124 0.876 5 N -0.358 5.358 6 C 0.358 3.642 7 O -0.456 6.456 8 C -0.116 4.116 9 C -0.202 4.202 10 C -0.099 4.099 11 C -0.244 4.244 12 C 0.063 3.937 13 C -0.517 4.517 14 H 0.068 0.932 15 C -0.170 4.170 16 N -0.475 5.475 17 Si 0.789 3.211 18 H -0.170 1.170 19 H -0.205 1.205 20 H -0.174 1.174 21 C -0.185 4.185 22 C -0.106 4.106 23 C -0.099 4.099 24 C -0.166 4.166 25 C 0.069 3.931 26 F -0.124 7.124 27 C -0.168 4.168 28 C -0.093 4.093 29 H 0.266 0.734 30 H 0.256 0.744 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.716 14.001 -20.467 25.242 hybrid contribution -0.129 -0.606 0.200 0.651 sum -4.845 13.395 -20.266 24.771 Atomic orbital electron populations 1.25786 0.96757 0.96710 0.98984 1.23466 0.94929 1.03351 1.02036 1.16335 0.83699 0.83662 0.96483 0.87629 1.45857 1.66971 1.14717 1.08239 1.18631 0.75979 0.86624 0.82939 1.90705 1.51767 1.63282 1.39877 1.19627 1.04172 0.92915 0.94899 1.20997 1.07221 0.95207 0.96734 1.21041 0.96993 0.95238 0.96598 1.21404 1.08865 1.00652 0.93463 1.17768 0.90232 0.92330 0.93325 1.19463 1.44634 0.93242 0.94406 0.93187 1.26910 0.93071 0.98639 0.98360 1.69723 1.35203 1.13590 1.28988 0.85468 0.79891 0.77431 0.78280 1.17039 1.20515 1.17425 1.21199 1.04837 0.96661 0.95779 1.19654 1.01829 0.95524 0.93636 1.20975 0.97309 1.00689 0.90892 1.21323 1.01078 0.94091 1.00075 1.18009 0.99802 0.93437 0.81894 1.91498 1.86879 1.87483 1.46552 1.21339 1.02428 1.01730 0.91267 1.21065 0.95618 0.94070 0.98550 0.73404 0.74420 0.83376 0.83366 0.87560 0.89434 0.89184 0.83511 0.82447 0.82509 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 19.25 74.32 1.43 -2.07 16 2 C -0.24 -5.87 12.81 31.12 0.40 -5.47 16 3 C 0.30 7.15 2.62 42.44 0.11 7.26 16 4 H 0.11 2.76 7.44 -2.39 -0.02 2.74 16 5 N -0.70 -18.52 4.94 -457.69 -2.26 -20.78 16 6 C 0.57 21.07 7.72 86.80 0.67 21.74 16 7 O -0.58 -25.67 16.00 -3.89 -0.06 -25.73 16 8 C -0.11 -4.55 5.87 -20.14 -0.12 -4.67 16 9 C -0.18 -5.95 9.55 22.70 0.22 -5.73 16 10 C -0.08 -2.81 10.01 22.18 0.22 -2.59 16 11 C -0.22 -9.85 7.17 22.77 0.16 -9.68 16 12 C 0.07 3.36 5.10 -21.32 -0.11 3.25 16 13 C -0.49 -27.86 9.57 23.47 0.22 -27.64 16 14 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 15 C 0.04 2.39 5.40 85.25 0.46 2.85 16 16 N -0.85 -46.69 13.93 21.82 0.30 -46.39 16 17 Si 0.97 41.23 24.52 68.60 1.68 42.91 16 18 H -0.25 -9.47 6.71 99.48 0.67 -8.80 16 19 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.25 -10.83 6.86 99.48 0.68 -10.14 16 21 C -0.16 -8.06 9.34 23.01 0.21 -7.84 16 22 C -0.11 -1.89 4.92 -19.86 -0.10 -1.99 16 23 C -0.08 -1.21 9.04 22.26 0.20 -1.01 16 24 C -0.15 -2.06 10.03 22.31 0.22 -1.84 16 25 C 0.09 1.40 7.30 22.38 0.16 1.56 16 26 F -0.15 -2.57 17.27 44.97 0.78 -1.79 16 27 C -0.15 -2.11 10.03 22.31 0.22 -1.89 16 28 C -0.07 -1.14 9.67 22.26 0.22 -0.93 16 29 H 0.25 3.20 7.80 -4.42 -0.03 3.16 16 30 H 0.42 8.36 4.87 -92.72 -0.45 7.91 16 31 H 0.15 3.29 6.38 -2.91 -0.02 3.28 16 32 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.11 4.59 4.72 -2.91 -0.01 4.57 16 34 H 0.30 14.45 8.30 -92.71 -0.77 13.68 16 35 H 0.09 4.75 7.64 -2.91 -0.02 4.73 16 36 H 0.15 1.74 6.90 -2.91 -0.02 1.72 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 39 H 0.15 1.82 8.04 -2.91 -0.02 1.80 16 Total: -1.00 -70.24 347.02 5.85 -64.39 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.59 Total: 24.08 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 4.82 Total: -36.69 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.96 Total: -67.17 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.68 Total: 42.91 kcal Total: -70.24 5.85 -64.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491805448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.903 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds