Wall clock time and date at job start Tue Mar 31 2020 14:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47362 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69659 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69234 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37883 * 119.99724 * 95.00208 * 5 3 2 8 8 N 1.31513 * 119.99750 * 184.83107 * 7 5 3 9 9 Si 1.86794 * 120.00199 * 4.83666 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.85641 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.85861 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86059 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69527 * 3 2 1 14 14 C 1.34782 * 120.00207 * 274.99523 * 13 3 2 15 15 O 1.21717 * 119.99539 * 0.02562 * 14 13 3 16 16 C 1.46250 * 120.00250 * 179.97438 * 14 13 3 17 17 C 1.34980 * 120.00336 * 180.02562 * 16 14 13 18 18 C 1.47000 * 120.00237 * 179.97438 * 17 16 14 19 19 C 1.39979 * 120.10600 * 179.97438 * 18 17 16 20 20 C 1.37668 * 119.90250 * 180.02562 * 19 18 17 21 21 C 1.38997 * 120.13221 * 0.02562 * 20 19 18 22 22 O 1.35760 * 119.89523 * 179.97438 * 21 20 19 23 23 C 1.42898 * 116.99599 * 0.02562 * 22 21 20 24 24 C 1.39110 * 120.21560 * 359.97438 * 21 20 19 25 25 Cl 1.73602 * 119.94985 * 179.97438 * 24 21 20 26 26 C 1.37778 * 120.09104 * 359.71600 * 24 21 20 27 27 H 1.08997 * 109.46395 * 300.00095 * 1 2 3 28 28 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47148 * 59.99265 * 1 2 3 30 30 H 1.09001 * 109.47148 * 120.00735 * 2 1 3 31 31 H 1.09008 * 109.46588 * 240.00421 * 2 1 3 32 32 H 0.97001 * 120.00197 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 34 34 H 1.08001 * 120.00202 * 0.02562 * 16 14 13 35 35 H 1.08002 * 119.99487 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.04981 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.93603 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.47104 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.47653 * 300.00302 * 23 22 21 40 40 H 1.09006 * 109.46868 * 60.00199 * 23 22 21 41 41 H 1.08000 * 120.06372 * 180.29992 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4448 -0.1409 6 1 4.1652 1.3332 0.7330 7 6 4.1157 1.5893 -1.3857 8 7 5.4205 1.4963 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7755 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1029 12 1 1.7562 1.1884 -2.7332 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3371 2.6301 0.4631 16 6 0.0782 3.3071 2.6471 17 6 -1.1396 3.8741 2.7788 18 6 -1.5145 4.5252 4.0423 19 6 -2.7767 5.1142 4.1812 20 6 -3.1232 5.7234 5.3661 21 6 -2.2222 5.7548 6.4241 22 8 -2.5687 6.3572 7.5903 23 6 -3.8734 6.9361 7.6587 24 6 -0.9665 5.1710 6.2918 25 17 0.1537 5.2149 7.6173 26 6 -0.6126 4.5534 5.1121 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 5.8253 1.5983 -2.3974 33 1 2.2949 2.1149 1.9978 34 1 0.7774 3.3323 3.4698 35 1 -1.8389 3.8486 1.9562 36 1 -3.4773 5.0917 3.3596 37 1 -4.0971 6.1777 5.4740 38 1 -4.0217 7.3826 8.6420 39 1 -3.9706 7.7046 6.8919 40 1 -4.6233 6.1622 7.4946 41 1 0.3606 4.0961 5.0116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492561950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:44 Heat of formation + Delta-G solvation = -47.087203 kcal Electronic energy + Delta-G solvation = -23821.340455 eV Core-core repulsion = 20113.654326 eV Total energy + Delta-G solvation = -3707.686129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58051 -39.20393 -38.08450 -36.67599 -35.28525 -33.50780 -32.34099 -31.46588 -31.34466 -29.39363 -27.90244 -27.35268 -24.08185 -23.14104 -22.70995 -21.37263 -19.64642 -19.31490 -18.72624 -17.59549 -16.65929 -16.47858 -16.25012 -15.76074 -15.45465 -14.77256 -14.66497 -14.41919 -14.17494 -13.98900 -13.69176 -13.40123 -12.84067 -12.77101 -12.47477 -12.24104 -11.94038 -11.92650 -11.87816 -11.81655 -11.74811 -11.32523 -11.08321 -10.94296 -10.67824 -10.66418 -10.04344 -9.88361 -9.82967 -9.24434 -9.21687 -9.16194 -8.69736 -8.14580 -7.90160 -6.23251 -4.26881 0.40437 0.81179 1.89979 1.91197 2.76038 3.26783 3.33262 3.34657 3.42074 3.93082 3.99784 4.29392 4.33004 4.40721 4.67451 4.70034 4.75066 4.82936 5.00613 5.03140 5.06725 5.15266 5.44021 5.52345 5.68301 5.73284 5.89659 6.06854 6.10235 6.18763 6.25065 6.39752 6.49553 6.67227 6.80093 6.81843 6.98514 7.02430 7.30172 7.37550 7.57609 8.15213 8.58544 8.77705 8.99847 9.38993 10.88450 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.002474 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.338306 B =11317.091990 C =11931.761199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.236 3.764 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.873 3.127 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.695 5.695 14 C 0.529 3.471 15 O -0.557 6.557 16 C -0.186 4.186 17 C -0.046 4.046 18 C -0.084 4.084 19 C -0.055 4.055 20 C -0.199 4.199 21 C 0.139 3.861 22 O -0.305 6.305 23 C 0.025 3.975 24 C -0.068 4.068 25 Cl -0.055 7.055 26 C -0.061 4.061 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.268 0.732 33 H 0.394 0.606 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.047 9.361 17.750 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.133 3.867 4 H 0.069 0.931 5 C -0.569 4.569 6 H 0.097 0.903 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.700 3.300 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.342 5.342 14 C 0.316 3.684 15 O -0.439 6.439 16 C -0.207 4.207 17 C -0.066 4.066 18 C -0.085 4.085 19 C -0.074 4.074 20 C -0.218 4.218 21 C 0.092 3.908 22 O -0.217 6.217 23 C -0.070 4.070 24 C -0.095 4.095 25 Cl -0.026 7.026 26 C -0.079 4.079 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.227 0.773 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.180 9.347 17.238 26.740 hybrid contribution -0.175 0.277 -0.414 0.529 sum -18.356 9.624 16.823 26.694 Atomic orbital electron populations 1.21906 0.97418 0.98801 1.02068 1.22071 0.93680 0.99408 1.01228 1.19184 0.95513 0.89139 0.82840 0.93064 1.21018 0.88687 1.51724 0.95472 0.90330 1.24943 0.94878 0.93688 0.98821 1.69883 1.09768 1.48335 1.24502 0.86902 0.81284 0.79637 0.82193 1.19874 1.21238 1.18311 1.46546 1.14286 1.55187 1.18200 1.18230 0.82972 0.79560 0.87644 1.90768 1.50996 1.60740 1.41426 1.23261 0.97845 1.01274 0.98345 1.22137 0.96578 0.93292 0.94593 1.18918 0.94242 1.01394 0.93940 1.21268 0.95287 0.93946 0.96859 1.21132 1.00397 1.06565 0.93714 1.18857 0.92361 0.93452 0.86123 1.86127 1.34532 1.69058 1.32004 1.23142 0.82194 0.97750 1.03908 1.20045 0.90683 1.06877 0.91942 1.98376 1.60468 1.97501 1.46292 1.21240 1.00291 0.96409 0.89966 0.93093 0.95146 0.93128 0.93003 0.92104 0.92243 0.77261 0.85780 0.84400 0.84443 0.84321 0.87903 0.92324 0.92344 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.16 0.32 -2.56 16 2 C -0.12 -2.70 5.59 -26.73 -0.15 -2.85 16 3 C 0.24 5.53 1.89 -69.09 -0.13 5.40 16 4 H 0.05 1.32 4.73 -51.93 -0.25 1.07 16 5 C -0.53 -14.16 9.05 -34.44 -0.31 -14.47 16 6 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 9 Si 0.87 21.52 26.99 -169.99 -4.59 16.93 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.26 -6.27 6.82 56.52 0.39 -5.88 16 13 N -0.70 -13.75 5.02 -56.38 -0.28 -14.03 16 14 C 0.53 9.88 6.34 -13.04 -0.08 9.79 16 15 O -0.56 -12.09 13.36 5.17 0.07 -12.02 16 16 C -0.19 -2.61 9.41 -37.52 -0.35 -2.97 16 17 C -0.05 -0.58 9.45 -37.19 -0.35 -0.93 16 18 C -0.08 -0.90 5.87 -105.05 -0.62 -1.52 16 19 C -0.06 -0.49 9.79 -39.14 -0.38 -0.87 16 20 C -0.20 -1.62 9.01 -39.51 -0.36 -1.98 16 21 C 0.14 1.37 6.69 -38.98 -0.26 1.10 16 22 O -0.30 -2.77 9.94 -18.99 -0.19 -2.96 16 23 C 0.02 0.12 9.81 101.05 0.99 1.11 16 24 C -0.07 -0.74 6.32 -39.43 -0.25 -0.99 16 25 Cl -0.06 -0.60 28.49 -51.86 -1.48 -2.07 16 26 C -0.06 -0.65 9.18 -39.11 -0.36 -1.00 16 27 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.39 6.86 8.57 -40.82 -0.35 6.51 16 34 H 0.12 1.42 6.07 -52.49 -0.32 1.10 16 35 H 0.14 1.77 7.52 -52.49 -0.39 1.38 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.14 0.74 6.27 -52.48 -0.33 0.41 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 40 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 41 H 0.15 1.42 6.16 -52.49 -0.32 1.10 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -32.07 356.30 -7.86 -39.93 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.14 Total: 4.75 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.39 Total: -10.57 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.49 Total: -39.37 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.12 Total: -14.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.59 Total: 16.93 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.07 -7.86 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492561950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.153 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds