Wall clock time and date at job start Tue Mar 31 2020 14:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47362 * 2 1 4 4 H 1.08999 * 109.47367 * 305.69659 * 3 2 1 5 5 C 1.50700 * 109.47481 * 185.69234 * 3 2 1 6 6 H 1.08005 * 120.00207 * 275.01103 * 5 3 2 7 7 C 1.37883 * 119.99724 * 95.00208 * 5 3 2 8 8 N 1.31513 * 119.99750 * 184.83107 * 7 5 3 9 9 Si 1.86794 * 120.00199 * 4.83666 * 7 5 3 10 10 H 1.48506 * 109.47231 * 84.85641 * 9 7 5 11 11 H 1.48496 * 109.47318 * 204.85861 * 9 7 5 12 12 H 1.48501 * 109.47379 * 324.86059 * 9 7 5 13 13 N 1.46500 * 109.46903 * 65.69527 * 3 2 1 14 14 C 1.34782 * 120.00207 * 274.99523 * 13 3 2 15 15 O 1.21717 * 119.99539 * 0.02562 * 14 13 3 16 16 C 1.46250 * 120.00250 * 179.97438 * 14 13 3 17 17 C 1.34980 * 120.00336 * 180.02562 * 16 14 13 18 18 C 1.47000 * 120.00237 * 179.97438 * 17 16 14 19 19 C 1.39979 * 120.10600 * 179.97438 * 18 17 16 20 20 C 1.37668 * 119.90250 * 180.02562 * 19 18 17 21 21 C 1.38997 * 120.13221 * 0.02562 * 20 19 18 22 22 O 1.35760 * 119.89523 * 179.97438 * 21 20 19 23 23 C 1.42898 * 116.99599 * 0.02562 * 22 21 20 24 24 C 1.39110 * 120.21560 * 359.97438 * 21 20 19 25 25 Cl 1.73602 * 119.94985 * 179.97438 * 24 21 20 26 26 C 1.37778 * 120.09104 * 359.71600 * 24 21 20 27 27 H 1.08997 * 109.46395 * 300.00095 * 1 2 3 28 28 H 1.08997 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47148 * 59.99265 * 1 2 3 30 30 H 1.09001 * 109.47148 * 120.00735 * 2 1 3 31 31 H 1.09008 * 109.46588 * 240.00421 * 2 1 3 32 32 H 0.97001 * 120.00197 * 180.02562 * 8 7 5 33 33 H 0.97003 * 120.00313 * 95.00035 * 13 3 2 34 34 H 1.08001 * 120.00202 * 0.02562 * 16 14 13 35 35 H 1.08002 * 119.99487 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.04981 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.93603 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.47104 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.47653 * 300.00302 * 23 22 21 40 40 H 1.09006 * 109.46868 * 60.00199 * 23 22 21 41 41 H 1.08000 * 120.06372 * 180.29992 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5405 1.4448 -0.1409 6 1 4.1652 1.3332 0.7330 7 6 4.1157 1.5893 -1.3857 8 7 5.4205 1.4963 -1.5218 9 14 3.0419 1.9171 -2.8785 10 1 2.7755 3.3741 -2.9863 11 1 3.7402 1.4497 -4.1029 12 1 1.7562 1.1884 -2.7332 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3371 2.6301 0.4631 16 6 0.0782 3.3071 2.6471 17 6 -1.1396 3.8741 2.7788 18 6 -1.5145 4.5252 4.0423 19 6 -2.7767 5.1142 4.1812 20 6 -3.1232 5.7234 5.3661 21 6 -2.2222 5.7548 6.4241 22 8 -2.5687 6.3572 7.5903 23 6 -3.8734 6.9361 7.6587 24 6 -0.9665 5.1710 6.2918 25 17 0.1537 5.2149 7.6173 26 6 -0.6126 4.5534 5.1121 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 5.8253 1.5983 -2.3974 33 1 2.2949 2.1149 1.9978 34 1 0.7774 3.3323 3.4698 35 1 -1.8389 3.8486 1.9562 36 1 -3.4773 5.0917 3.3596 37 1 -4.0971 6.1777 5.4740 38 1 -4.0217 7.3826 8.6420 39 1 -3.9706 7.7046 6.8919 40 1 -4.6233 6.1622 7.4946 41 1 0.3606 4.0961 5.0116 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492561950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:43 Heat of formation + Delta-G solvation = -66.996225 kcal Electronic energy + Delta-G solvation = -23822.203775 eV Core-core repulsion = 20113.654326 eV Total energy + Delta-G solvation = -3708.549449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27747 -40.67556 -38.83458 -37.47959 -36.97679 -34.52906 -34.37244 -33.05066 -32.06300 -30.32300 -29.35282 -28.22817 -25.30892 -24.37051 -23.83727 -22.53260 -21.33441 -20.60220 -19.40368 -19.13794 -18.02733 -17.54332 -17.09257 -16.79813 -16.65912 -16.15543 -16.03000 -15.56644 -15.10273 -14.98781 -14.77323 -14.66388 -14.37502 -13.98622 -13.77809 -13.68032 -13.48503 -13.07157 -12.91837 -12.73785 -12.67186 -12.54276 -12.34466 -12.30988 -12.04764 -11.86828 -11.84482 -11.68023 -11.19683 -10.83734 -10.79028 -10.72542 -9.97448 -9.67522 -8.86749 -8.38392 -6.44035 -0.47796 0.10009 0.94901 1.13292 1.29738 1.33726 1.44920 2.20490 2.27683 2.37275 2.56232 2.75650 3.04907 3.61487 3.69562 3.88514 4.07105 4.15222 4.25106 4.31755 4.35282 4.40558 4.41873 4.44089 4.58924 4.71219 4.76476 4.84882 4.86158 5.03032 5.07956 5.12906 5.27182 5.28225 5.39623 5.45028 5.49175 5.57754 5.59842 5.81305 6.16004 6.22470 6.61364 6.97683 7.22184 7.52747 8.76736 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.002474 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.338306 B =11317.091990 C =11931.761199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.241 3.759 4 H 0.031 0.969 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.254 1.254 13 N -0.700 5.700 14 C 0.530 3.470 15 O -0.591 6.591 16 C -0.214 4.214 17 C -0.012 4.012 18 C -0.106 4.106 19 C -0.045 4.045 20 C -0.195 4.195 21 C 0.141 3.859 22 O -0.322 6.322 23 C 0.014 3.986 24 C -0.091 4.091 25 Cl -0.064 7.064 26 C -0.061 4.061 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.270 0.730 33 H 0.404 0.596 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.026 10.269 18.836 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.137 3.863 4 H 0.049 0.951 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.169 4.169 8 N -0.570 5.570 9 Si 0.751 3.249 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.178 1.178 13 N -0.348 5.348 14 C 0.320 3.680 15 O -0.476 6.476 16 C -0.234 4.234 17 C -0.032 4.032 18 C -0.107 4.107 19 C -0.063 4.063 20 C -0.214 4.214 21 C 0.094 3.906 22 O -0.235 6.235 23 C -0.080 4.080 24 C -0.118 4.118 25 Cl -0.035 7.035 26 C -0.079 4.079 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.239 0.761 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.189 0.811 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.172 10.263 18.359 29.844 hybrid contribution 0.598 0.112 -0.544 0.816 sum -20.574 10.374 17.815 29.126 Atomic orbital electron populations 1.21767 0.95716 1.00269 1.01258 1.21985 0.95120 0.97946 1.01172 1.18910 0.93152 0.90351 0.83921 0.95123 1.21234 0.90389 1.50325 0.94539 0.92675 1.25619 0.95783 0.93989 1.01462 1.69984 1.11271 1.50445 1.25261 0.86053 0.79988 0.79269 0.79567 1.20049 1.20367 1.17782 1.46289 1.15400 1.55762 1.17303 1.18798 0.81820 0.78609 0.88747 1.90742 1.51735 1.62027 1.43055 1.23000 0.99531 1.03791 0.97087 1.22239 0.95404 0.90576 0.94984 1.18845 0.95492 1.03177 0.93176 1.21587 0.94661 0.92295 0.97765 1.21456 1.01335 1.05926 0.92662 1.19087 0.92153 0.92562 0.86823 1.86120 1.36757 1.68902 1.31739 1.23477 0.80613 0.98456 1.05461 1.20206 0.91405 1.08238 0.91960 1.98367 1.60871 1.97601 1.46661 1.21312 1.00503 0.96096 0.90004 0.93078 0.92463 0.94724 0.92070 0.93156 0.92074 0.76064 0.83511 0.84678 0.82083 0.81137 0.86349 0.90994 0.90926 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.53 71.98 0.61 -4.50 16 2 C -0.12 -5.26 5.59 30.59 0.17 -5.09 16 3 C 0.24 11.34 1.89 44.24 0.08 11.43 16 4 H 0.03 1.59 4.73 -2.39 -0.01 1.58 16 5 C -0.53 -28.64 9.05 25.60 0.23 -28.41 16 6 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 7 C 0.03 1.80 5.47 84.66 0.46 2.26 16 8 N -0.93 -55.93 13.96 21.45 0.30 -55.63 16 9 Si 0.93 44.95 26.99 68.60 1.85 46.81 16 10 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.25 -12.00 6.82 99.48 0.68 -11.32 16 13 N -0.70 -27.68 5.02 -450.50 -2.26 -29.95 16 14 C 0.53 19.57 6.34 86.32 0.55 20.12 16 15 O -0.59 -25.45 13.36 -4.40 -0.06 -25.51 16 16 C -0.21 -5.76 9.41 23.60 0.22 -5.54 16 17 C -0.01 -0.28 9.45 23.82 0.23 -0.06 16 18 C -0.11 -2.04 5.87 -20.14 -0.12 -2.16 16 19 C -0.05 -0.65 9.79 22.56 0.22 -0.43 16 20 C -0.20 -2.48 9.01 22.32 0.20 -2.27 16 21 C 0.14 2.43 6.69 22.66 0.15 2.58 16 22 O -0.32 -5.10 9.94 -90.86 -0.90 -6.00 16 23 C 0.01 0.09 9.81 113.37 1.11 1.20 16 24 C -0.09 -1.84 6.32 22.37 0.14 -1.70 16 25 Cl -0.06 -1.33 28.49 -2.72 -0.08 -1.41 16 26 C -0.06 -1.20 9.18 22.58 0.21 -1.00 16 27 H 0.05 1.95 5.63 -2.39 -0.01 1.94 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.03 1.42 7.88 -2.39 -0.02 1.40 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.40 14.16 8.57 -92.71 -0.79 13.36 16 34 H 0.15 3.19 6.07 -2.91 -0.02 3.17 16 35 H 0.14 3.23 7.52 -2.91 -0.02 3.21 16 36 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.17 1.01 6.27 -2.91 -0.02 1.00 16 38 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.07 0.28 7.65 -2.39 -0.02 0.26 16 40 H 0.07 0.27 7.65 -2.38 -0.02 0.25 16 41 H 0.15 2.74 6.16 -2.91 -0.02 2.72 16 Total: -1.00 -70.15 356.30 3.57 -66.58 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.25 Total: 18.67 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 4.47 Total: -13.56 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.96 Total: -85.58 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.96 Total: -31.51 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.85 Total: 46.81 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -70.15 3.57 -66.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492561950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.419 kcal (2) G-P(sol) polarization free energy of solvation -70.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds