Wall clock time and date at job start Tue Mar 31 2020 14:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46767 * 2 1 4 4 H 1.08991 * 109.46982 * 55.00017 * 3 2 1 5 5 C 1.50696 * 109.46810 * 175.00080 * 3 2 1 6 6 H 1.07999 * 120.00510 * 120.00018 * 5 3 2 7 7 C 1.37884 * 120.00220 * 299.99739 * 5 3 2 8 8 N 1.31514 * 119.99441 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00311 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47062 * 59.99580 * 9 7 5 11 11 H 1.48497 * 109.47179 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47257 * 300.00329 * 9 7 5 13 13 N 1.46496 * 109.46799 * 294.99592 * 3 2 1 14 14 C 1.34785 * 119.99829 * 85.00609 * 13 3 2 15 15 O 1.21721 * 119.99650 * 359.97438 * 14 13 3 16 16 C 1.46256 * 119.99897 * 179.97438 * 14 13 3 17 17 C 1.34979 * 119.99683 * 187.36191 * 16 14 13 18 18 C 1.46999 * 119.99851 * 10.66081 * 17 16 14 19 19 C 1.39976 * 120.11440 * 43.46664 * 18 17 16 20 20 C 1.37664 * 119.90688 * 180.25427 * 19 18 17 21 21 C 1.38997 * 120.12924 * 359.76298 * 20 19 18 22 22 O 1.35767 * 119.89152 * 180.02562 * 21 20 19 23 23 C 1.42895 * 116.99748 * 359.97438 * 22 21 20 24 24 C 1.39105 * 120.22072 * 0.02562 * 21 20 19 25 25 Cl 1.73592 * 119.95646 * 180.02562 * 24 21 20 26 26 C 1.37776 * 120.08824 * 359.97037 * 24 21 20 27 27 H 1.08998 * 109.47006 * 60.00193 * 1 2 3 28 28 H 1.09005 * 109.46557 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47084 * 299.99935 * 1 2 3 30 30 H 1.08998 * 109.47084 * 240.00064 * 2 1 3 31 31 H 1.08998 * 109.47297 * 119.99343 * 2 1 3 32 32 H 0.97002 * 119.99640 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00129 * 265.00258 * 13 3 2 34 34 H 1.07994 * 120.00143 * 7.36610 * 16 14 13 35 35 H 1.08003 * 119.99616 * 190.64848 * 17 16 14 36 36 H 1.08000 * 120.04507 * 0.04384 * 19 18 17 37 37 H 1.08002 * 119.93864 * 179.74821 * 20 19 18 38 38 H 1.09008 * 109.47106 * 299.99227 * 23 22 21 39 39 H 1.08998 * 109.47723 * 59.99368 * 23 22 21 40 40 H 1.08996 * 109.46737 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.06103 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8814 1.3818 10 1 6.4995 2.2817 1.3820 11 1 6.3978 0.2180 2.6510 12 1 6.5976 0.1475 0.2349 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3424 2.6318 -0.4310 16 6 0.0483 3.3186 -2.6166 17 6 -1.1067 4.0137 -2.6851 18 6 -1.8582 4.3131 -1.4576 19 6 -1.1847 4.7490 -0.3106 20 6 -1.8922 5.0231 0.8382 21 6 -3.2738 4.8725 0.8594 22 8 -3.9667 5.1447 1.9947 23 6 -3.2115 5.5801 3.1270 24 6 -3.9489 4.4439 -0.2788 25 17 -5.6746 4.2588 -0.2449 26 6 -3.2499 4.1671 -1.4334 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8293 -0.0610 2.9498 33 1 2.2719 2.1231 -1.9978 34 1 0.6868 3.2455 -3.4845 35 1 -1.4786 4.3501 -3.6416 36 1 -0.1113 4.8669 -0.3257 37 1 -1.3726 5.3556 1.7247 38 1 -2.4910 4.8094 3.4013 39 1 -2.6825 6.5002 2.8790 40 1 -3.8849 5.7629 3.9643 41 1 -3.7746 3.8347 -2.3170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492561951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:47 Heat of formation + Delta-G solvation = -33.110300 kcal Electronic energy + Delta-G solvation = -25115.429338 eV Core-core repulsion = 21408.349294 eV Total energy + Delta-G solvation = -3707.080045 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17502 -39.17346 -37.43284 -36.28025 -35.10053 -33.11003 -32.39383 -30.93696 -30.74972 -29.17559 -27.35901 -26.76869 -23.91339 -22.89649 -22.33726 -21.36866 -19.54539 -19.12629 -18.22406 -17.24261 -16.42679 -15.90414 -15.75305 -15.55366 -15.09526 -14.59091 -14.28122 -13.99825 -13.94179 -13.76877 -13.44533 -13.01304 -12.74925 -12.64497 -12.06364 -12.02323 -11.70298 -11.53532 -11.42923 -11.26861 -11.19887 -10.99266 -10.91744 -10.84127 -10.67739 -10.32842 -10.17711 -9.65197 -9.37279 -9.09484 -9.04451 -8.65978 -8.51250 -7.77733 -7.51394 -6.15226 -4.24922 0.92495 1.44583 2.01956 2.34262 3.22462 3.24711 3.28355 3.29136 3.87294 3.97225 4.15714 4.39889 4.81743 4.87023 5.00977 5.15670 5.15948 5.24819 5.31692 5.36545 5.47683 5.58345 5.68225 5.86636 6.02247 6.26697 6.34590 6.40078 6.47178 6.47718 6.66961 6.74871 6.75691 7.04795 7.20621 7.33241 7.36424 7.44486 7.60109 7.72894 7.88059 8.16336 8.66286 8.75659 9.13784 9.42907 10.89792 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.003369 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.839934 B = 8308.516088 C = 8939.782554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.520 3.480 15 O -0.536 6.536 16 C -0.197 4.197 17 C -0.042 4.042 18 C -0.088 4.088 19 C 0.021 3.979 20 C -0.207 4.207 21 C 0.146 3.854 22 O -0.309 6.309 23 C 0.026 3.974 24 C -0.084 4.084 25 Cl -0.073 7.073 26 C -0.058 4.058 27 H 0.040 0.960 28 H 0.020 0.980 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 9.918 -6.220 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.346 5.346 14 C 0.307 3.693 15 O -0.417 6.417 16 C -0.218 4.218 17 C -0.062 4.062 18 C -0.088 4.088 19 C 0.002 3.998 20 C -0.226 4.226 21 C 0.099 3.901 22 O -0.222 6.222 23 C -0.069 4.069 24 C -0.111 4.111 25 Cl -0.044 7.044 26 C -0.077 4.077 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.791 9.730 -5.272 16.171 hybrid contribution 1.561 -0.246 -0.163 1.589 sum -10.229 9.484 -5.436 14.971 Atomic orbital electron populations 1.21822 0.98201 0.97938 1.01285 1.21929 0.92672 0.99798 1.02161 1.18757 0.94052 0.89198 0.81024 0.93314 1.21205 0.90799 1.39166 1.06276 0.92201 1.24878 0.98526 0.94780 0.95410 1.69887 1.35197 1.37472 1.09327 0.86537 0.84951 0.78298 0.77480 1.20212 1.21135 1.20161 1.46535 1.14364 1.55329 1.18420 1.18314 0.82876 0.80210 0.87856 1.90843 1.50666 1.60015 1.40223 1.23299 0.98414 1.01038 0.99095 1.22107 0.93048 0.94806 0.96228 1.18609 0.91929 1.03654 0.94636 1.20993 0.99107 0.89246 0.90432 1.20986 0.91783 1.09385 1.00473 1.18772 0.90257 0.95311 0.85737 1.86067 1.35970 1.81277 1.18880 1.23095 0.97571 0.99484 0.86749 1.19781 0.84708 1.12387 0.94230 1.98327 1.10790 1.96563 1.98766 1.20812 0.92878 0.97876 0.96100 0.94128 0.96070 0.93246 0.95165 0.88412 0.92522 0.77992 0.85459 0.85171 0.85735 0.84925 0.92121 0.92596 0.88289 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.03 5.45 -26.72 -0.15 -3.18 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.40 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.73 8.73 -34.44 -0.30 -14.03 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.22 11.29 55.43 0.63 -23.59 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.70 -13.67 5.02 -56.38 -0.28 -13.95 16 14 C 0.52 9.47 5.32 -13.04 -0.07 9.40 16 15 O -0.54 -11.20 9.26 5.17 0.05 -11.15 16 16 C -0.20 -2.67 9.91 -37.52 -0.37 -3.04 16 17 C -0.04 -0.51 9.80 -37.19 -0.36 -0.88 16 18 C -0.09 -1.27 4.55 -105.05 -0.48 -1.75 16 19 C 0.02 0.32 6.57 -39.14 -0.26 0.07 16 20 C -0.21 -3.12 9.01 -39.51 -0.36 -3.48 16 21 C 0.15 2.22 6.69 -38.98 -0.26 1.96 16 22 O -0.31 -4.36 9.94 -19.01 -0.19 -4.55 16 23 C 0.03 0.27 9.81 101.05 0.99 1.26 16 24 C -0.08 -1.25 6.32 -39.43 -0.25 -1.50 16 25 Cl -0.07 -1.00 28.49 -51.86 -1.48 -2.48 16 26 C -0.06 -0.80 9.56 -39.11 -0.37 -1.18 16 27 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.39 6.61 8.52 -40.82 -0.35 6.26 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 36 H 0.12 2.01 6.98 -52.49 -0.37 1.64 16 37 H 0.13 1.78 6.27 -52.49 -0.33 1.45 16 38 H 0.06 0.65 7.65 -51.92 -0.40 0.25 16 39 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 351.36 15.07 5.29 5.29 Total: -1.00 -29.85 351.36 -8.49 -38.34 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.32 Total: 7.90 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.17 Total: -10.97 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.34 Total: -37.55 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.14 Total: -15.71 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.48 Total: -2.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.85 -8.49 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492561951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.229 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds