Wall clock time and date at job start Tue Mar 31 2020 14:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46767 * 2 1 4 4 H 1.08991 * 109.46982 * 55.00017 * 3 2 1 5 5 C 1.50696 * 109.46810 * 175.00080 * 3 2 1 6 6 H 1.07999 * 120.00510 * 120.00018 * 5 3 2 7 7 C 1.37884 * 120.00220 * 299.99739 * 5 3 2 8 8 N 1.31514 * 119.99441 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00311 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47062 * 59.99580 * 9 7 5 11 11 H 1.48497 * 109.47179 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47257 * 300.00329 * 9 7 5 13 13 N 1.46496 * 109.46799 * 294.99592 * 3 2 1 14 14 C 1.34785 * 119.99829 * 85.00609 * 13 3 2 15 15 O 1.21721 * 119.99650 * 359.97438 * 14 13 3 16 16 C 1.46256 * 119.99897 * 179.97438 * 14 13 3 17 17 C 1.34979 * 119.99683 * 187.36191 * 16 14 13 18 18 C 1.46999 * 119.99851 * 10.66081 * 17 16 14 19 19 C 1.39976 * 120.11440 * 43.46664 * 18 17 16 20 20 C 1.37664 * 119.90688 * 180.25427 * 19 18 17 21 21 C 1.38997 * 120.12924 * 359.76298 * 20 19 18 22 22 O 1.35767 * 119.89152 * 180.02562 * 21 20 19 23 23 C 1.42895 * 116.99748 * 359.97438 * 22 21 20 24 24 C 1.39105 * 120.22072 * 0.02562 * 21 20 19 25 25 Cl 1.73592 * 119.95646 * 180.02562 * 24 21 20 26 26 C 1.37776 * 120.08824 * 359.97037 * 24 21 20 27 27 H 1.08998 * 109.47006 * 60.00193 * 1 2 3 28 28 H 1.09005 * 109.46557 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47084 * 299.99935 * 1 2 3 30 30 H 1.08998 * 109.47084 * 240.00064 * 2 1 3 31 31 H 1.08998 * 109.47297 * 119.99343 * 2 1 3 32 32 H 0.97002 * 119.99640 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00129 * 265.00258 * 13 3 2 34 34 H 1.07994 * 120.00143 * 7.36610 * 16 14 13 35 35 H 1.08003 * 119.99616 * 190.64848 * 17 16 14 36 36 H 1.08000 * 120.04507 * 0.04384 * 19 18 17 37 37 H 1.08002 * 119.93864 * 179.74821 * 20 19 18 38 38 H 1.09008 * 109.47106 * 299.99227 * 23 22 21 39 39 H 1.08998 * 109.47723 * 59.99368 * 23 22 21 40 40 H 1.08996 * 109.46737 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.06103 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8814 1.3818 10 1 6.4995 2.2817 1.3820 11 1 6.3978 0.2180 2.6510 12 1 6.5976 0.1475 0.2349 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3424 2.6318 -0.4310 16 6 0.0483 3.3186 -2.6166 17 6 -1.1067 4.0137 -2.6851 18 6 -1.8582 4.3131 -1.4576 19 6 -1.1847 4.7490 -0.3106 20 6 -1.8922 5.0231 0.8382 21 6 -3.2738 4.8725 0.8594 22 8 -3.9667 5.1447 1.9947 23 6 -3.2115 5.5801 3.1270 24 6 -3.9489 4.4439 -0.2788 25 17 -5.6746 4.2588 -0.2449 26 6 -3.2499 4.1671 -1.4334 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8293 -0.0610 2.9498 33 1 2.2719 2.1231 -1.9978 34 1 0.6868 3.2455 -3.4845 35 1 -1.4786 4.3501 -3.6416 36 1 -0.1113 4.8669 -0.3257 37 1 -1.3726 5.3556 1.7247 38 1 -2.4910 4.8094 3.4013 39 1 -2.6825 6.5002 2.8790 40 1 -3.8849 5.7629 3.9643 41 1 -3.7746 3.8347 -2.3170 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492561951.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:46 Heat of formation + Delta-G solvation = -50.444354 kcal Electronic energy + Delta-G solvation = -25116.180999 eV Core-core repulsion = 21408.349294 eV Total energy + Delta-G solvation = -3707.831706 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.32592 -40.53322 -38.59628 -37.43235 -36.77179 -34.26111 -34.23072 -32.71397 -31.87235 -30.31923 -28.94657 -27.99641 -25.43256 -24.44993 -23.49976 -22.70832 -21.31459 -20.51117 -19.34277 -18.66602 -17.82380 -17.24944 -17.18168 -16.77421 -16.49444 -16.21539 -15.60167 -15.31837 -15.18266 -14.93810 -14.64304 -14.44820 -14.18093 -13.95546 -13.69969 -13.40141 -13.14576 -13.01345 -12.89380 -12.74782 -12.64132 -12.47587 -12.25137 -12.13445 -12.02150 -11.97770 -11.76522 -11.56573 -11.03034 -10.58361 -10.43947 -10.41096 -9.86858 -9.38089 -8.67289 -8.14631 -6.31629 -0.17918 0.30892 0.91226 1.22627 1.45000 1.45970 1.53795 2.26226 2.38468 2.60980 2.76380 2.86671 3.15055 3.75875 3.81593 4.00787 4.19297 4.24413 4.32875 4.36876 4.49368 4.50867 4.59472 4.66205 4.68858 4.78562 4.79894 4.94864 5.09157 5.14171 5.24417 5.32679 5.39009 5.46642 5.58212 5.65227 5.68340 5.72234 5.84127 6.01148 6.20371 6.26673 6.77732 7.13593 7.36533 7.72574 8.89985 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016885 B = 0.003369 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.839934 B = 8308.516088 C = 8939.782554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.283 3.717 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.702 5.702 14 C 0.514 3.486 15 O -0.569 6.569 16 C -0.209 4.209 17 C -0.019 4.019 18 C -0.100 4.100 19 C 0.005 3.995 20 C -0.219 4.219 21 C 0.134 3.866 22 O -0.322 6.322 23 C 0.020 3.980 24 C -0.099 4.099 25 Cl -0.066 7.066 26 C -0.055 4.055 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.023 0.977 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.263 0.737 33 H 0.402 0.598 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.125 0.875 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.979 10.507 -8.543 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.179 3.821 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.350 5.350 14 C 0.304 3.696 15 O -0.451 6.451 16 C -0.229 4.229 17 C -0.038 4.038 18 C -0.100 4.100 19 C -0.013 4.013 20 C -0.238 4.238 21 C 0.088 3.912 22 O -0.235 6.235 23 C -0.075 4.075 24 C -0.126 4.126 25 Cl -0.037 7.037 26 C -0.074 4.074 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.236 0.764 34 H 0.183 0.817 35 H 0.196 0.804 36 H 0.129 0.871 37 H 0.156 0.844 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.144 0.856 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.829 10.340 -7.632 17.467 hybrid contribution 1.459 -0.362 0.634 1.631 sum -10.370 9.978 -6.998 16.003 Atomic orbital electron populations 1.21631 0.96956 0.98665 1.00276 1.21776 0.93652 0.99532 1.00921 1.18249 0.93233 0.88905 0.81693 0.98256 1.21584 0.91739 1.38772 1.06532 0.91164 1.25731 1.03013 0.94464 0.95132 1.70048 1.36993 1.38409 1.09845 0.85492 0.79516 0.78434 0.77460 1.19625 1.21381 1.19046 1.46286 1.15586 1.55873 1.17290 1.19125 0.81779 0.79483 0.89198 1.90842 1.51418 1.60929 1.41949 1.23257 0.99776 1.02187 0.97684 1.22559 0.91545 0.92705 0.97010 1.18931 0.92510 1.03356 0.95245 1.21017 0.98559 0.90334 0.91439 1.21123 0.92161 1.09772 1.00772 1.18940 0.90316 0.95540 0.86431 1.86046 1.36793 1.81358 1.19311 1.23341 0.98118 0.99612 0.86400 1.20059 0.85337 1.12537 0.94645 1.98322 1.10067 1.96527 1.98769 1.21114 0.92701 0.96921 0.96658 0.93437 0.94340 0.95808 0.94415 0.91395 0.92750 0.76391 0.81708 0.80351 0.87136 0.84429 0.93067 0.91295 0.85647 0.82143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.85 5.45 30.60 0.17 -5.69 16 3 C 0.28 14.03 2.24 44.25 0.10 14.13 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.04 16 5 C -0.55 -28.31 8.73 25.60 0.22 -28.09 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.91 -51.80 11.29 21.45 0.24 -51.56 16 9 Si 0.97 41.45 29.54 68.60 2.03 43.48 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.70 -27.26 5.02 -450.49 -2.26 -29.52 16 14 C 0.51 18.43 5.32 86.33 0.46 18.89 16 15 O -0.57 -24.16 9.26 -4.42 -0.04 -24.20 16 16 C -0.21 -5.03 9.91 23.61 0.23 -4.80 16 17 C -0.02 -0.40 9.80 23.82 0.23 -0.16 16 18 C -0.10 -2.73 4.55 -20.14 -0.09 -2.82 16 19 C 0.01 0.16 6.57 22.56 0.15 0.31 16 20 C -0.22 -6.81 9.01 22.32 0.20 -6.60 16 21 C 0.13 4.11 6.69 22.66 0.15 4.27 16 22 O -0.32 -9.10 9.94 -90.95 -0.90 -10.00 16 23 C 0.02 0.40 9.81 113.37 1.11 1.51 16 24 C -0.10 -2.87 6.32 22.37 0.14 -2.72 16 25 Cl -0.07 -1.73 28.49 -2.72 -0.08 -1.81 16 26 C -0.06 -1.44 9.56 22.58 0.22 -1.22 16 27 H 0.05 2.05 5.64 -2.39 -0.01 2.04 16 28 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.02 1.15 7.84 -2.39 -0.02 1.13 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 3.75 5.95 -2.39 -0.01 3.73 16 32 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.40 13.18 8.52 -92.71 -0.79 12.39 16 34 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.11 3.71 6.98 -2.91 -0.02 3.69 16 37 H 0.14 3.91 6.27 -2.91 -0.02 3.89 16 38 H 0.05 1.14 7.65 -2.38 -0.02 1.12 16 39 H 0.07 1.22 7.65 -2.39 -0.02 1.20 16 40 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -67.07 351.36 3.61 -63.46 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.27 Total: 26.53 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 4.35 Total: -16.38 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -2.02 Total: -81.08 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.94 Total: -34.20 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -67.07 3.61 -63.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492561951.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.013 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds