Wall clock time and date at job start Tue Mar 31 2020 14:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21723 * 119.99999 * 359.97438 * 14 13 3 16 16 C 1.46258 * 120.00340 * 180.02562 * 14 13 3 17 17 C 1.34978 * 120.00073 * 179.97438 * 16 14 13 18 18 C 1.47002 * 120.00290 * 179.97438 * 17 16 14 19 19 C 1.39975 * 120.11406 * 179.97438 * 18 17 16 20 20 C 1.37663 * 119.90921 * 180.02562 * 19 18 17 21 21 C 1.39003 * 120.12921 * 0.02562 * 20 19 18 22 22 O 1.35755 * 119.89209 * 179.97438 * 21 20 19 23 23 C 1.42900 * 117.00156 * 0.02562 * 22 21 20 24 24 C 1.39103 * 120.21768 * 359.97438 * 21 20 19 25 25 Cl 1.73593 * 119.95419 * 180.02562 * 24 21 20 26 26 C 1.37779 * 120.08946 * 359.71844 * 24 21 20 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 29 29 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 34 34 H 1.07994 * 120.00202 * 359.97438 * 16 14 13 35 35 H 1.07999 * 120.00339 * 0.02562 * 17 16 14 36 36 H 1.08004 * 120.04286 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.94089 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.47303 * 59.99984 * 23 22 21 39 39 H 1.08998 * 109.47336 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47018 * 300.00223 * 23 22 21 41 41 H 1.08005 * 120.06632 * 180.30097 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3422 2.6319 -0.4311 16 6 0.0482 3.3178 -2.6169 17 6 -1.1710 3.8853 -2.7324 18 6 -1.5599 4.5425 -3.9885 19 6 -2.8239 5.1312 -4.1110 20 6 -3.1839 5.7451 -5.2894 21 6 -2.2950 5.7809 -6.3574 22 8 -2.6552 6.3871 -7.5175 23 6 -3.9606 6.9664 -7.5687 24 6 -1.0375 5.1975 -6.2415 25 17 0.0674 5.2468 -7.5794 26 6 -0.6655 4.5863 -5.0641 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.8288 -0.0530 2.9544 33 1 2.2721 2.1230 -1.9977 34 1 0.7379 3.3463 -3.4475 35 1 -1.8606 3.8572 -1.9017 36 1 -3.5161 5.1031 -3.2824 37 1 -4.1589 6.1999 -5.3843 38 1 -4.0486 7.7325 -6.7982 39 1 -4.1200 7.4168 -8.5483 40 1 -4.7086 6.1921 -7.3982 41 1 0.3128 4.1377 -4.9729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492561952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:50 Heat of formation + Delta-G solvation = -46.472749 kcal Electronic energy + Delta-G solvation = -23743.898952 eV Core-core repulsion = 20036.239468 eV Total energy + Delta-G solvation = -3707.659484 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55643 -39.05955 -38.04222 -36.66176 -35.14383 -33.44900 -32.34039 -31.33702 -30.94327 -29.33011 -27.80033 -26.90960 -24.07057 -23.13958 -22.81684 -21.23148 -19.53633 -19.16203 -18.69972 -17.44393 -16.50827 -16.37203 -16.23173 -15.53815 -15.26242 -14.70097 -14.47596 -14.42021 -14.34644 -13.92318 -13.66775 -13.22240 -12.83785 -12.63984 -12.29211 -12.07730 -11.89780 -11.87160 -11.73964 -11.48499 -11.29235 -11.22871 -11.06894 -10.97758 -10.81213 -10.31765 -10.15980 -9.87775 -9.60575 -9.19365 -9.09159 -9.01750 -8.48546 -8.06861 -7.75024 -6.11067 -4.20427 0.44473 0.83548 1.91324 1.96659 2.77949 3.26655 3.31924 3.33153 3.37202 4.04349 4.08711 4.31725 4.36768 4.44419 4.71647 4.72632 4.80183 4.86717 5.03546 5.06219 5.09639 5.20306 5.47097 5.58246 5.72911 5.76610 5.93699 6.21723 6.41246 6.45267 6.48524 6.54383 6.68535 6.83987 7.06704 7.22278 7.38658 7.47113 7.63751 7.75893 7.92003 8.19519 8.69140 8.79137 9.15464 9.46906 10.94256 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.002373 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.485165 B =11798.633918 C =12747.076835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.528 3.472 15 O -0.552 6.552 16 C -0.185 4.185 17 C -0.049 4.049 18 C -0.083 4.083 19 C -0.056 4.056 20 C -0.199 4.199 21 C 0.138 3.862 22 O -0.305 6.305 23 C 0.025 3.975 24 C -0.068 4.068 25 Cl -0.056 7.056 26 C -0.062 4.062 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.389 0.611 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.460 11.246 -18.684 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.347 5.347 14 C 0.315 3.685 15 O -0.434 6.434 16 C -0.205 4.205 17 C -0.069 4.069 18 C -0.083 4.083 19 C -0.074 4.074 20 C -0.218 4.218 21 C 0.091 3.909 22 O -0.218 6.218 23 C -0.070 4.070 24 C -0.095 4.095 25 Cl -0.027 7.027 26 C -0.080 4.080 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.140 0.860 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.746 11.128 -18.104 25.309 hybrid contribution 1.196 0.036 -0.318 1.239 sum -12.550 11.164 -18.423 24.931 Atomic orbital electron populations 1.21839 0.98344 0.98000 1.01258 1.21931 0.92631 0.99764 1.02266 1.18793 0.94191 0.89218 0.81032 0.93239 1.21202 0.90732 1.39222 1.06167 0.92132 1.24888 0.98593 0.94820 0.95386 1.69888 1.35208 1.37618 1.09245 0.86517 0.84881 0.78312 0.77433 1.20192 1.21152 1.20166 1.46439 1.14483 1.55264 1.18528 1.18132 0.83032 0.79726 0.87583 1.90782 1.51536 1.60542 1.40521 1.23297 0.97723 1.01056 0.98472 1.22130 0.96525 0.93521 0.94709 1.18934 0.94199 1.01182 0.94002 1.21273 0.95242 0.93909 0.96970 1.21131 1.00473 1.06525 0.93635 1.18849 0.92359 0.93489 0.86199 1.86122 1.34470 1.68921 1.32249 1.23139 0.82168 0.97746 1.03934 1.20036 0.90751 1.07022 0.91724 1.98373 1.61528 1.97498 1.45349 1.21236 1.00298 0.96513 0.89965 0.93158 0.94236 0.95900 0.95034 0.88313 0.92519 0.77862 0.85983 0.84366 0.84412 0.84329 0.92339 0.87925 0.92335 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.76 2.24 -69.09 -0.15 6.60 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 8 N -0.88 -24.67 11.30 55.43 0.63 -24.05 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.70 -14.43 5.02 -56.39 -0.28 -14.71 16 14 C 0.53 10.34 6.30 -13.04 -0.08 10.25 16 15 O -0.55 -12.66 13.36 5.17 0.07 -12.59 16 16 C -0.18 -2.69 9.41 -37.52 -0.35 -3.04 16 17 C -0.05 -0.64 9.45 -37.19 -0.35 -0.99 16 18 C -0.08 -0.91 5.87 -105.05 -0.62 -1.53 16 19 C -0.06 -0.51 9.78 -39.14 -0.38 -0.89 16 20 C -0.20 -1.66 9.01 -39.51 -0.36 -2.02 16 21 C 0.14 1.38 6.69 -38.98 -0.26 1.12 16 22 O -0.30 -2.81 9.94 -18.97 -0.19 -3.00 16 23 C 0.03 0.12 9.81 101.05 0.99 1.11 16 24 C -0.07 -0.75 6.32 -39.43 -0.25 -1.00 16 25 Cl -0.06 -0.61 28.49 -51.86 -1.48 -2.09 16 26 C -0.06 -0.67 9.18 -39.10 -0.36 -1.03 16 27 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.65 5.96 -51.93 -0.31 2.34 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.39 6.94 8.52 -40.82 -0.35 6.59 16 34 H 0.12 1.44 6.07 -52.49 -0.32 1.12 16 35 H 0.14 1.87 7.52 -52.49 -0.39 1.47 16 36 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.14 0.77 6.27 -52.49 -0.33 0.44 16 38 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 41 H 0.15 1.44 6.16 -52.48 -0.32 1.12 16 LS Contribution 356.40 15.07 5.37 5.37 Total: -1.00 -31.16 356.40 -8.45 -39.61 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.14 Total: 5.98 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.40 Total: -10.09 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.34 Total: -38.76 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.12 Total: -15.59 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.48 Total: -2.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.16 -8.45 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492561952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.867 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds