Wall clock time and date at job start Tue Mar 31 2020 14:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47168 * 294.99612 * 3 2 1 14 14 C 1.34776 * 120.00056 * 85.00588 * 13 3 2 15 15 O 1.21723 * 119.99999 * 359.97438 * 14 13 3 16 16 C 1.46258 * 120.00340 * 180.02562 * 14 13 3 17 17 C 1.34978 * 120.00073 * 179.97438 * 16 14 13 18 18 C 1.47002 * 120.00290 * 179.97438 * 17 16 14 19 19 C 1.39975 * 120.11406 * 179.97438 * 18 17 16 20 20 C 1.37663 * 119.90921 * 180.02562 * 19 18 17 21 21 C 1.39003 * 120.12921 * 0.02562 * 20 19 18 22 22 O 1.35755 * 119.89209 * 179.97438 * 21 20 19 23 23 C 1.42900 * 117.00156 * 0.02562 * 22 21 20 24 24 C 1.39103 * 120.21768 * 359.97438 * 21 20 19 25 25 Cl 1.73593 * 119.95419 * 180.02562 * 24 21 20 26 26 C 1.37779 * 120.08946 * 359.71844 * 24 21 20 27 27 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 28 28 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 29 29 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 31 31 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00221 * 265.00067 * 13 3 2 34 34 H 1.07994 * 120.00202 * 359.97438 * 16 14 13 35 35 H 1.07999 * 120.00339 * 0.02562 * 17 16 14 36 36 H 1.08004 * 120.04286 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.94089 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.47303 * 59.99984 * 23 22 21 39 39 H 1.08998 * 109.47336 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47018 * 300.00223 * 23 22 21 41 41 H 1.08005 * 120.06632 * 180.30097 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.4946 2.2940 1.3851 11 1 6.3969 0.2326 2.6592 12 1 6.6013 0.1568 0.2442 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3422 2.6319 -0.4311 16 6 0.0482 3.3178 -2.6169 17 6 -1.1710 3.8853 -2.7324 18 6 -1.5599 4.5425 -3.9885 19 6 -2.8239 5.1312 -4.1110 20 6 -3.1839 5.7451 -5.2894 21 6 -2.2950 5.7809 -6.3574 22 8 -2.6552 6.3871 -7.5175 23 6 -3.9606 6.9664 -7.5687 24 6 -1.0375 5.1975 -6.2415 25 17 0.0674 5.2468 -7.5794 26 6 -0.6655 4.5863 -5.0641 27 1 -0.3634 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.8288 -0.0530 2.9544 33 1 2.2721 2.1230 -1.9977 34 1 0.7379 3.3463 -3.4475 35 1 -1.8606 3.8572 -1.9017 36 1 -3.5161 5.1031 -3.2824 37 1 -4.1589 6.1999 -5.3843 38 1 -4.0486 7.7325 -6.7982 39 1 -4.1200 7.4168 -8.5483 40 1 -4.7086 6.1921 -7.3982 41 1 0.3128 4.1377 -4.9729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492561952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:49 Heat of formation + Delta-G solvation = -65.069182 kcal Electronic energy + Delta-G solvation = -23744.705354 eV Core-core repulsion = 20036.239468 eV Total energy + Delta-G solvation = -3708.465886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27144 -40.60726 -38.82524 -37.47426 -36.94450 -34.51910 -34.24720 -32.75069 -32.06056 -30.27891 -28.95612 -28.18296 -25.46194 -24.45086 -23.83006 -22.49993 -21.29612 -20.54175 -19.37664 -18.87314 -17.83855 -17.44399 -16.97503 -16.79412 -16.64599 -16.17407 -16.01045 -15.59868 -15.04832 -14.94521 -14.67156 -14.54814 -14.36388 -13.85988 -13.49872 -13.47797 -13.19077 -13.03569 -12.89227 -12.72403 -12.66099 -12.63809 -12.31759 -12.17373 -12.04326 -12.03710 -11.84111 -11.57480 -11.04768 -10.79036 -10.71226 -10.49961 -9.97033 -9.60578 -8.86163 -8.14763 -6.31937 -0.47033 0.10297 0.96116 1.13323 1.45481 1.47223 1.54912 2.20741 2.37164 2.41298 2.73487 2.76909 3.14565 3.61924 3.70650 3.89304 4.07764 4.14849 4.26390 4.35381 4.41851 4.42316 4.51361 4.59487 4.71159 4.76838 4.78426 4.86264 5.03316 5.07725 5.09689 5.26032 5.41137 5.46241 5.48733 5.57864 5.59356 5.65625 5.82301 5.97262 6.18783 6.22718 6.76049 7.04732 7.35158 7.62622 8.90419 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.002373 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.485165 B =11798.633918 C =12747.076835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.701 5.701 14 C 0.527 3.473 15 O -0.594 6.594 16 C -0.211 4.211 17 C -0.015 4.015 18 C -0.105 4.105 19 C -0.046 4.046 20 C -0.195 4.195 21 C 0.141 3.859 22 O -0.322 6.322 23 C 0.014 3.986 24 C -0.090 4.090 25 Cl -0.063 7.063 26 C -0.060 4.060 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.265 0.735 33 H 0.403 0.597 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.282 12.343 -20.864 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.349 5.349 14 C 0.317 3.683 15 O -0.479 6.479 16 C -0.231 4.231 17 C -0.035 4.035 18 C -0.106 4.106 19 C -0.064 4.064 20 C -0.213 4.213 21 C 0.094 3.906 22 O -0.235 6.235 23 C -0.080 4.080 24 C -0.117 4.117 25 Cl -0.034 7.034 26 C -0.079 4.079 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.168 0.832 35 H 0.150 0.850 36 H 0.178 0.822 37 H 0.189 0.811 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.571 12.243 -20.335 27.852 hybrid contribution 1.247 -0.162 0.242 1.280 sum -13.324 12.081 -20.093 26.966 Atomic orbital electron populations 1.21671 0.96907 0.99101 1.00314 1.21782 0.93844 0.99132 1.01223 1.18363 0.93593 0.89217 0.81442 0.98364 1.21562 0.91505 1.39101 1.06578 0.91132 1.25771 1.03292 0.94411 0.95039 1.70045 1.37094 1.38381 1.09743 0.85436 0.79161 0.78422 0.77537 1.19712 1.21165 1.18970 1.46198 1.15545 1.55614 1.17545 1.18833 0.81931 0.78796 0.88735 1.90755 1.52513 1.62097 1.42489 1.23009 0.99457 1.03552 0.97094 1.22225 0.95305 0.90818 0.95124 1.18833 0.95515 1.03055 0.93196 1.21579 0.94592 0.92342 0.97905 1.21447 1.01451 1.05882 0.92548 1.19078 0.92134 0.92531 0.86878 1.86116 1.36677 1.68732 1.31946 1.23478 0.80560 0.98441 1.05538 1.20188 0.91487 1.08295 0.91754 1.98365 1.61838 1.97586 1.45599 1.21306 1.00502 0.96121 0.89926 0.95495 0.93719 0.93620 0.94150 0.91024 0.92605 0.76174 0.83250 0.85037 0.82243 0.81144 0.91002 0.86301 0.90965 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.98 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.41 2.24 44.25 0.10 14.51 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -29.34 8.73 25.60 0.22 -29.12 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.81 5.30 84.66 0.45 1.26 16 8 N -0.91 -52.66 11.30 21.45 0.24 -52.42 16 9 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 13 N -0.70 -29.40 5.02 -450.51 -2.26 -31.66 16 14 C 0.53 20.98 6.30 86.33 0.54 21.53 16 15 O -0.59 -28.20 13.36 -4.42 -0.06 -28.26 16 16 C -0.21 -6.01 9.41 23.61 0.22 -5.79 16 17 C -0.01 -0.37 9.45 23.82 0.23 -0.14 16 18 C -0.11 -2.12 5.87 -20.14 -0.12 -2.24 16 19 C -0.05 -0.71 9.78 22.55 0.22 -0.49 16 20 C -0.19 -2.58 9.01 22.32 0.20 -2.38 16 21 C 0.14 2.47 6.69 22.66 0.15 2.62 16 22 O -0.32 -5.13 9.94 -90.80 -0.90 -6.04 16 23 C 0.01 0.09 9.81 113.37 1.11 1.20 16 24 C -0.09 -1.83 6.32 22.37 0.14 -1.69 16 25 Cl -0.06 -1.30 28.49 -2.72 -0.08 -1.38 16 26 C -0.06 -1.21 9.18 22.58 0.21 -1.00 16 27 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 28 H 0.04 1.96 5.64 -2.39 -0.01 1.95 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 3.99 5.96 -2.39 -0.01 3.98 16 32 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 33 H 0.40 14.34 8.52 -92.71 -0.79 13.55 16 34 H 0.15 3.34 6.07 -2.91 -0.02 3.32 16 35 H 0.13 3.46 7.52 -2.91 -0.02 3.44 16 36 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.17 1.11 6.27 -2.91 -0.02 1.09 16 38 H 0.07 0.30 7.65 -2.38 -0.02 0.28 16 39 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.29 7.65 -2.39 -0.02 0.27 16 41 H 0.15 2.77 6.16 -2.91 -0.02 2.75 16 Total: -1.00 -69.80 356.40 3.71 -66.09 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.28 Total: 21.83 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.46 Total: -12.59 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.02 Total: -84.08 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.96 Total: -34.29 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -69.80 3.71 -66.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492561952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.024 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds