Wall clock time and date at job start Tue Mar 31 2020 14:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47768 * 2 1 4 4 H 1.09005 * 109.46973 * 54.99634 * 3 2 1 5 5 C 1.50697 * 109.47379 * 175.00052 * 3 2 1 6 6 H 1.08004 * 119.99698 * 120.00147 * 5 3 2 7 7 C 1.37872 * 120.00199 * 299.99996 * 5 3 2 8 8 N 1.31518 * 119.99694 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00257 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47300 * 90.00058 * 9 7 5 11 11 H 1.48500 * 109.47285 * 210.00203 * 9 7 5 12 12 H 1.48507 * 109.47017 * 330.00108 * 9 7 5 13 13 N 1.46502 * 109.46871 * 295.00421 * 3 2 1 14 14 C 1.34782 * 120.00049 * 84.99874 * 13 3 2 15 15 O 1.21716 * 119.99784 * 359.97438 * 14 13 3 16 16 C 1.46241 * 119.99787 * 179.97438 * 14 13 3 17 17 C 1.34994 * 119.99884 * 186.53799 * 16 14 13 18 18 C 1.46948 * 120.00034 * 10.06209 * 17 16 14 19 19 C 1.39925 * 120.20329 * 48.57378 * 18 17 16 20 20 C 1.37864 * 119.86487 * 179.97438 * 19 18 17 21 21 Cl 1.73595 * 119.85288 * 179.97438 * 20 19 18 22 22 C 1.38667 * 120.29138 * 359.97438 * 20 19 18 23 23 C 1.38118 * 120.42474 * 0.02562 * 22 20 19 24 24 C 1.38602 * 120.12558 * 359.78679 * 23 22 20 25 25 O 1.35709 * 120.14710 * 180.23066 * 24 23 22 26 26 C 1.42900 * 117.00315 * 0.21230 * 25 24 23 27 27 H 1.09002 * 109.46848 * 300.00267 * 1 2 3 28 28 H 1.08993 * 109.47540 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47144 * 59.99504 * 1 2 3 30 30 H 1.08998 * 109.47144 * 120.00496 * 2 1 3 31 31 H 1.09002 * 109.46848 * 239.99733 * 2 1 3 32 32 H 0.97002 * 119.99518 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00107 * 264.99503 * 13 3 2 34 34 H 1.07999 * 120.00092 * 6.54111 * 16 14 13 35 35 H 1.08001 * 120.00242 * 190.06219 * 17 16 14 36 36 H 1.07998 * 120.06877 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.78446 * 180.02562 * 22 20 19 38 38 H 1.08001 * 119.93789 * 180.02562 * 23 22 20 39 39 H 1.09002 * 109.46949 * 59.99774 * 26 25 24 40 40 H 1.09000 * 109.46799 * 179.97438 * 26 25 24 41 41 H 1.08994 * 109.46705 * 300.00305 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1434 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8810 1.3817 10 1 6.4418 2.1138 2.0849 11 1 6.4396 -0.3101 2.1548 12 1 6.6136 0.8413 0.0277 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3422 2.6319 -0.4309 16 6 0.0485 3.3188 -2.6163 17 6 -1.1145 4.0001 -2.6895 18 6 -1.8838 4.2740 -1.4679 19 6 -1.2483 4.8047 -0.3399 20 6 -1.9769 5.0594 0.8024 21 17 -1.1879 5.7172 2.2018 22 6 -3.3371 4.7926 0.8384 23 6 -3.9767 4.2687 -0.2680 24 6 -3.2618 4.0095 -1.4268 25 8 -3.8907 3.4991 -2.5157 26 6 -5.2942 3.2567 -2.4002 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.8293 -0.0611 2.9499 33 1 2.2719 2.1231 -1.9978 34 1 0.6935 3.2569 -3.4804 35 1 -1.4797 4.3439 -3.6460 36 1 -0.1891 5.0143 -0.3641 37 1 -3.9000 4.9957 1.7374 38 1 -5.0365 4.0642 -0.2314 39 1 -5.8073 4.1922 -2.1773 40 1 -5.6712 2.8506 -3.3388 41 1 -5.4746 2.5430 -1.5965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492578923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:01 Heat of formation + Delta-G solvation = -34.552089 kcal Electronic energy + Delta-G solvation = -25349.852192 eV Core-core repulsion = 21642.709626 eV Total energy + Delta-G solvation = -3707.142566 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25805 -38.96924 -37.48216 -35.99813 -35.12317 -33.43413 -32.33177 -30.96872 -29.95068 -29.51477 -27.31993 -26.89445 -24.11786 -22.88869 -21.97375 -21.46441 -19.49725 -19.10437 -18.15129 -17.10940 -16.42181 -15.96116 -15.77814 -15.62159 -15.04308 -14.65804 -14.34204 -14.14068 -13.76562 -13.70914 -13.18598 -13.01802 -12.60226 -12.53654 -12.12222 -11.96035 -11.90402 -11.78353 -11.44341 -11.21018 -11.14887 -10.93223 -10.81567 -10.62245 -10.52069 -10.27207 -10.11862 -9.70038 -9.58551 -9.05393 -8.99477 -8.45407 -8.20242 -7.77052 -7.66014 -6.08710 -4.17890 0.95808 1.47802 1.99090 2.47900 3.21398 3.26511 3.33319 3.34879 3.81276 4.06372 4.22995 4.46836 4.70803 4.81378 4.95319 5.02092 5.19246 5.22628 5.29601 5.34471 5.43339 5.61673 5.70561 5.92552 6.11348 6.16465 6.37398 6.44529 6.46681 6.52399 6.56344 6.72447 6.75848 7.10473 7.26832 7.34850 7.43092 7.52900 7.66855 7.79980 7.95730 8.22902 8.74790 8.83250 9.22673 9.49865 10.96468 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.003955 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.934580 B = 7078.104435 C = 7984.510106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.521 3.479 15 O -0.536 6.536 16 C -0.195 4.195 17 C -0.036 4.036 18 C -0.070 4.070 19 C 0.008 3.992 20 C -0.072 4.072 21 Cl -0.076 7.076 22 C -0.067 4.067 23 C -0.208 4.208 24 C 0.141 3.859 25 O -0.312 6.312 26 C 0.028 3.972 27 H 0.049 0.951 28 H 0.019 0.981 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.532 8.516 -8.792 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.308 3.692 15 O -0.417 6.417 16 C -0.216 4.216 17 C -0.056 4.056 18 C -0.071 4.071 19 C -0.011 4.011 20 C -0.099 4.099 21 Cl -0.047 7.047 22 C -0.086 4.086 23 C -0.227 4.227 24 C 0.096 3.904 25 O -0.225 6.225 26 C -0.068 4.068 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.880 8.362 -7.969 18.837 hybrid contribution 1.202 -0.217 0.038 1.222 sum -13.678 8.144 -7.932 17.786 Atomic orbital electron populations 1.21815 0.98281 0.97790 1.01307 1.21920 0.92634 0.99877 1.02086 1.18755 0.94038 0.89136 0.81113 0.93202 1.21240 0.90836 1.38926 1.06224 0.92179 1.24873 0.98461 0.94854 0.95432 1.69903 1.35033 1.37641 1.09294 0.86489 0.85072 0.77619 0.78157 1.20594 1.21119 1.19882 1.46503 1.14404 1.55495 1.18389 1.18290 0.82938 0.80209 0.87812 1.90851 1.50718 1.60007 1.40116 1.23320 0.98188 1.00994 0.99129 1.21951 0.92582 0.95017 0.96053 1.17969 0.89666 1.04306 0.95166 1.20812 0.98847 0.92175 0.89276 1.20498 0.93028 1.06751 0.89587 1.98354 1.80735 1.84544 1.41098 1.20746 0.92509 0.97161 0.98193 1.20900 1.00236 1.08113 0.93425 1.19041 0.91151 0.94032 0.86218 1.86009 1.23068 1.78354 1.35043 1.23049 0.79299 1.00803 1.03611 0.93215 0.96192 0.94148 0.88441 0.95225 0.92637 0.78071 0.85449 0.85049 0.84954 0.85299 0.85106 0.92756 0.88364 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.85 11.30 55.43 0.63 -24.22 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.70 -14.36 5.02 -56.38 -0.28 -14.64 16 14 C 0.52 10.04 5.54 -13.04 -0.07 9.97 16 15 O -0.54 -11.76 9.49 5.17 0.05 -11.71 16 16 C -0.20 -2.88 9.94 -37.52 -0.37 -3.25 16 17 C -0.04 -0.50 9.33 -37.21 -0.35 -0.85 16 18 C -0.07 -1.09 4.37 -104.94 -0.46 -1.54 16 19 C 0.01 0.13 6.50 -39.09 -0.25 -0.12 16 20 C -0.07 -1.14 6.31 -39.56 -0.25 -1.39 16 21 Cl -0.08 -1.20 28.94 -51.86 -1.50 -2.70 16 22 C -0.07 -0.93 9.81 -39.47 -0.39 -1.31 16 23 C -0.21 -2.67 9.03 -39.49 -0.36 -3.03 16 24 C 0.14 2.02 6.70 -38.64 -0.26 1.76 16 25 O -0.31 -3.95 9.95 -18.83 -0.19 -4.13 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.39 6.94 8.52 -40.82 -0.35 6.59 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.13 2.30 7.44 -52.49 -0.39 1.91 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 39 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -30.81 352.36 -8.50 -39.31 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.34 Total: 7.69 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.14 Total: -10.61 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.34 Total: -38.86 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.14 Total: -15.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.81 -8.50 -39.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492578923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.754 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds