Wall clock time and date at job start Tue Mar 31 2020 14:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47768 * 2 1 4 4 H 1.09005 * 109.46973 * 54.99634 * 3 2 1 5 5 C 1.50697 * 109.47379 * 175.00052 * 3 2 1 6 6 H 1.08004 * 119.99698 * 120.00147 * 5 3 2 7 7 C 1.37872 * 120.00199 * 299.99996 * 5 3 2 8 8 N 1.31518 * 119.99694 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00257 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47300 * 90.00058 * 9 7 5 11 11 H 1.48500 * 109.47285 * 210.00203 * 9 7 5 12 12 H 1.48507 * 109.47017 * 330.00108 * 9 7 5 13 13 N 1.46502 * 109.46871 * 295.00421 * 3 2 1 14 14 C 1.34782 * 120.00049 * 84.99874 * 13 3 2 15 15 O 1.21716 * 119.99784 * 359.97438 * 14 13 3 16 16 C 1.46241 * 119.99787 * 179.97438 * 14 13 3 17 17 C 1.34994 * 119.99884 * 186.53799 * 16 14 13 18 18 C 1.46948 * 120.00034 * 10.06209 * 17 16 14 19 19 C 1.39925 * 120.20329 * 48.57378 * 18 17 16 20 20 C 1.37864 * 119.86487 * 179.97438 * 19 18 17 21 21 Cl 1.73595 * 119.85288 * 179.97438 * 20 19 18 22 22 C 1.38667 * 120.29138 * 359.97438 * 20 19 18 23 23 C 1.38118 * 120.42474 * 0.02562 * 22 20 19 24 24 C 1.38602 * 120.12558 * 359.78679 * 23 22 20 25 25 O 1.35709 * 120.14710 * 180.23066 * 24 23 22 26 26 C 1.42900 * 117.00315 * 0.21230 * 25 24 23 27 27 H 1.09002 * 109.46848 * 300.00267 * 1 2 3 28 28 H 1.08993 * 109.47540 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47144 * 59.99504 * 1 2 3 30 30 H 1.08998 * 109.47144 * 120.00496 * 2 1 3 31 31 H 1.09002 * 109.46848 * 239.99733 * 2 1 3 32 32 H 0.97002 * 119.99518 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00107 * 264.99503 * 13 3 2 34 34 H 1.07999 * 120.00092 * 6.54111 * 16 14 13 35 35 H 1.08001 * 120.00242 * 190.06219 * 17 16 14 36 36 H 1.07998 * 120.06877 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.78446 * 180.02562 * 22 20 19 38 38 H 1.08001 * 119.93789 * 180.02562 * 23 22 20 39 39 H 1.09002 * 109.46949 * 59.99774 * 26 25 24 40 40 H 1.09000 * 109.46799 * 179.97438 * 26 25 24 41 41 H 1.08994 * 109.46705 * 300.00305 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1434 0.8782 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8810 1.3817 10 1 6.4418 2.1138 2.0849 11 1 6.4396 -0.3101 2.1548 12 1 6.6136 0.8413 0.0277 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3422 2.6319 -0.4309 16 6 0.0485 3.3188 -2.6163 17 6 -1.1145 4.0001 -2.6895 18 6 -1.8838 4.2740 -1.4679 19 6 -1.2483 4.8047 -0.3399 20 6 -1.9769 5.0594 0.8024 21 17 -1.1879 5.7172 2.2018 22 6 -3.3371 4.7926 0.8384 23 6 -3.9767 4.2687 -0.2680 24 6 -3.2618 4.0095 -1.4268 25 8 -3.8907 3.4991 -2.5157 26 6 -5.2942 3.2567 -2.4002 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 3.8293 -0.0611 2.9499 33 1 2.2719 2.1231 -1.9978 34 1 0.6935 3.2569 -3.4804 35 1 -1.4797 4.3439 -3.6460 36 1 -0.1891 5.0143 -0.3641 37 1 -3.9000 4.9957 1.7374 38 1 -5.0365 4.0642 -0.2314 39 1 -5.8073 4.1922 -2.1773 40 1 -5.6712 2.8506 -3.3388 41 1 -5.4746 2.5430 -1.5965 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492578923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:00 Heat of formation + Delta-G solvation = -52.937443 kcal Electronic energy + Delta-G solvation = -25350.649441 eV Core-core repulsion = 21642.709626 eV Total energy + Delta-G solvation = -3707.939814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36458 -40.40528 -38.57545 -37.29944 -36.77802 -34.68402 -34.21967 -32.79057 -31.09741 -30.63136 -28.91155 -28.00323 -25.60258 -24.58580 -23.05973 -22.87672 -21.32357 -20.55836 -19.29114 -18.50051 -17.82839 -17.24250 -17.20260 -16.65856 -16.62741 -16.11151 -15.92062 -15.41207 -15.03312 -14.80076 -14.69652 -14.43184 -14.13760 -13.72102 -13.69147 -13.39537 -13.17616 -13.06064 -12.94026 -12.82105 -12.71957 -12.68705 -12.19051 -12.14698 -12.01893 -11.73054 -11.59731 -11.54861 -11.02144 -10.87311 -10.57562 -10.41355 -9.57015 -9.27267 -8.87597 -8.14191 -6.31022 -0.18116 0.34472 0.84894 1.28966 1.44142 1.44526 1.54936 2.32790 2.38590 2.60631 2.72280 2.85756 3.15501 3.67892 3.81390 4.10351 4.15833 4.23201 4.44654 4.45053 4.48889 4.51021 4.59353 4.61800 4.77518 4.77959 4.83662 5.01557 5.07907 5.10606 5.25118 5.29544 5.34748 5.46777 5.48206 5.59219 5.65487 5.70919 5.84500 6.01653 6.20886 6.39960 6.78306 7.13896 7.36887 7.73093 8.90872 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.003955 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.934580 B = 7078.104435 C = 7984.510106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.283 3.717 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.704 5.704 14 C 0.515 3.485 15 O -0.566 6.566 16 C -0.207 4.207 17 C -0.017 4.017 18 C -0.094 4.094 19 C -0.010 4.010 20 C -0.093 4.093 21 Cl -0.087 7.087 22 C -0.069 4.069 23 C -0.203 4.203 24 C 0.141 3.859 25 O -0.322 6.322 26 C 0.016 3.984 27 H 0.023 0.977 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.401 0.599 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.658 8.621 -11.093 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.180 3.820 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.184 1.184 13 N -0.352 5.352 14 C 0.305 3.695 15 O -0.449 6.449 16 C -0.228 4.228 17 C -0.036 4.036 18 C -0.095 4.095 19 C -0.029 4.029 20 C -0.120 4.120 21 Cl -0.059 7.059 22 C -0.088 4.088 23 C -0.222 4.222 24 C 0.095 3.905 25 O -0.235 6.235 26 C -0.078 4.078 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.129 0.871 37 H 0.168 0.832 38 H 0.183 0.817 39 H 0.092 0.908 40 H 0.140 0.860 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.017 8.481 -10.316 20.854 hybrid contribution 1.365 -0.212 0.745 1.569 sum -14.653 8.269 -9.571 19.356 Atomic orbital electron populations 1.21611 0.96938 0.98648 1.00189 1.21764 0.93710 0.99420 1.00931 1.18249 0.93266 0.88931 0.81581 0.98473 1.21606 0.91715 1.38663 1.06552 0.91226 1.25740 1.03087 0.94482 0.95102 1.70061 1.36920 1.38490 1.09820 0.85431 0.79477 0.77353 0.78598 1.20571 1.20995 1.18409 1.46259 1.15551 1.56049 1.17316 1.19034 0.81919 0.79514 0.89068 1.90843 1.51446 1.60840 1.41729 1.23264 0.99499 1.02132 0.97873 1.22359 0.91427 0.93027 0.96826 1.18227 0.90867 1.04904 0.95526 1.20717 0.98039 0.93700 0.90428 1.20728 0.94109 1.07953 0.89208 1.98338 1.81152 1.84774 1.41625 1.21057 0.91716 0.96541 0.99495 1.21293 1.01826 1.06616 0.92431 1.19155 0.90912 0.93364 0.87112 1.85994 1.25380 1.77813 1.34328 1.23409 0.77100 1.02069 1.05228 0.95807 0.94185 0.93649 0.91330 0.94376 0.92758 0.76479 0.81805 0.81388 0.87115 0.83152 0.81688 0.90843 0.86001 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.78 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.66 2.24 44.24 0.10 14.76 16 4 H 0.00 -0.16 7.58 -2.38 -0.02 -0.18 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.87 5.29 84.65 0.45 1.31 16 8 N -0.91 -53.23 11.30 21.45 0.24 -52.98 16 9 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 N -0.70 -29.09 5.02 -450.49 -2.26 -31.35 16 14 C 0.52 19.99 5.54 86.32 0.48 20.47 16 15 O -0.57 -25.59 9.49 -4.40 -0.04 -25.63 16 16 C -0.21 -5.76 9.94 23.60 0.23 -5.52 16 17 C -0.02 -0.43 9.33 23.81 0.22 -0.21 16 18 C -0.09 -2.85 4.37 -20.07 -0.09 -2.94 16 19 C -0.01 -0.33 6.50 22.59 0.15 -0.19 16 20 C -0.09 -3.04 6.31 22.28 0.14 -2.90 16 21 Cl -0.09 -2.88 28.94 -2.72 -0.08 -2.96 16 22 C -0.07 -1.85 9.81 22.34 0.22 -1.63 16 23 C -0.20 -4.79 9.03 22.33 0.20 -4.59 16 24 C 0.14 3.75 6.70 22.88 0.15 3.90 16 25 O -0.32 -7.19 9.95 -90.30 -0.90 -8.09 16 26 C 0.02 0.21 9.81 113.37 1.11 1.32 16 27 H 0.02 1.18 7.84 -2.39 -0.02 1.16 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 2.03 5.64 -2.39 -0.01 2.02 16 30 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.40 14.13 8.52 -92.71 -0.79 13.34 16 34 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.11 4.12 7.44 -2.91 -0.02 4.10 16 37 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.17 2.64 6.30 -2.91 -0.02 2.62 16 39 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.74 7.65 -2.39 -0.02 0.73 16 Total: -1.00 -69.79 352.36 3.63 -66.16 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.27 Total: 25.96 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 4.37 Total: -15.93 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.02 Total: -84.33 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.94 Total: -33.72 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.08 Total: -2.96 kcal Total: -69.79 3.63 -66.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492578923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.228 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds