Wall clock time and date at job start Tue Mar 31 2020 14:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47516 * 2 1 4 4 H 1.08995 * 109.47291 * 305.00551 * 3 2 1 5 5 C 1.50692 * 109.47120 * 184.99795 * 3 2 1 6 6 H 1.07998 * 120.00384 * 240.00001 * 5 3 2 7 7 C 1.37885 * 119.99914 * 60.00999 * 5 3 2 8 8 N 1.31511 * 119.99586 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00072 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47458 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47413 * 119.99723 * 9 7 5 12 12 H 1.48498 * 109.47020 * 239.99481 * 9 7 5 13 13 N 1.46508 * 109.46485 * 65.00366 * 3 2 1 14 14 C 1.34776 * 119.99868 * 274.99652 * 13 3 2 15 15 O 1.21720 * 120.00126 * 0.02562 * 14 13 3 16 16 C 1.46236 * 120.00178 * 180.02562 * 14 13 3 17 17 C 1.34996 * 120.00541 * 173.29439 * 16 14 13 18 18 C 1.46942 * 119.99803 * 349.93059 * 17 16 14 19 19 C 1.39927 * 120.20629 * 310.57110 * 18 17 16 20 20 C 1.37860 * 119.86865 * 179.72508 * 19 18 17 21 21 Cl 1.73601 * 119.85266 * 180.29698 * 20 19 18 22 22 C 1.38667 * 120.29060 * 0.27052 * 20 19 18 23 23 C 1.38122 * 120.42535 * 0.02562 * 22 20 19 24 24 C 1.38601 * 120.12334 * 359.97438 * 23 22 20 25 25 O 1.35706 * 120.14578 * 180.02562 * 24 23 22 26 26 C 1.42904 * 117.00272 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.46820 * 299.99699 * 1 2 3 28 28 H 1.08995 * 109.46941 * 59.99304 * 1 2 3 29 29 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46820 * 240.00300 * 2 1 3 31 31 H 1.08995 * 109.46941 * 120.00696 * 2 1 3 32 32 H 0.97002 * 120.00186 * 180.02562 * 8 7 5 33 33 H 0.96998 * 119.99680 * 95.00519 * 13 3 2 34 34 H 1.08003 * 119.99774 * 353.29587 * 16 14 13 35 35 H 1.08003 * 119.99958 * 169.92495 * 17 16 14 36 36 H 1.07996 * 120.06330 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.78682 * 179.97438 * 22 20 19 38 38 H 1.07999 * 119.93823 * 180.02562 * 23 22 20 39 39 H 1.08996 * 109.46918 * 179.97438 * 26 25 24 40 40 H 1.08998 * 109.47177 * 300.00151 * 26 25 24 41 41 H 1.09001 * 109.46763 * 60.00115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3368 -2.1730 9 14 6.0049 0.8811 -1.3819 10 1 6.5988 1.5469 -0.1948 11 1 6.4970 -0.5176 -1.4632 12 1 6.3990 1.6166 -2.6102 13 7 1.6526 2.0973 1.2520 14 6 0.4353 2.6643 1.3672 15 8 -0.3422 2.6319 0.4312 16 6 0.0486 3.3185 2.6166 17 6 -1.1128 4.0027 2.6890 18 6 -1.8798 4.2797 1.4666 19 6 -1.2450 4.8266 0.3460 20 6 -1.9701 5.0784 -0.7991 21 17 -1.1805 5.7498 -2.1918 22 6 -3.3272 4.7973 -0.8436 23 6 -3.9673 4.2630 0.2576 24 6 -3.2552 4.0029 1.4178 25 8 -3.8835 3.4775 2.4999 26 6 -5.2829 3.2168 2.3744 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8292 -0.0616 -2.9497 33 1 2.2722 2.1229 1.9979 34 1 0.6924 3.2543 3.4814 35 1 -1.4784 4.3463 3.6455 36 1 -0.1882 5.0472 0.3768 37 1 -3.8875 4.9982 -1.7448 38 1 -5.0245 4.0467 0.2142 39 1 -5.6598 2.7991 3.3079 40 1 -5.8074 4.1466 2.1540 41 1 -5.4488 2.5055 1.5653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492578924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:04 Heat of formation + Delta-G solvation = -34.925661 kcal Electronic energy + Delta-G solvation = -25350.350926 eV Core-core repulsion = 21643.192161 eV Total energy + Delta-G solvation = -3707.158765 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.25446 -38.96141 -37.48414 -36.00131 -35.12132 -33.43601 -32.32961 -30.96738 -29.95386 -29.51370 -27.31929 -26.89570 -24.11751 -22.88792 -21.97465 -21.46443 -19.49755 -19.10410 -18.14516 -17.11083 -16.41976 -15.96629 -15.77817 -15.62042 -15.04633 -14.64290 -14.34773 -14.13798 -13.77065 -13.71302 -13.18346 -13.01355 -12.60546 -12.54127 -12.11963 -11.96317 -11.90536 -11.78515 -11.44749 -11.21417 -11.14755 -10.92937 -10.81590 -10.61713 -10.52553 -10.26440 -10.12016 -9.69008 -9.58828 -9.05137 -8.98246 -8.46022 -8.21468 -7.77230 -7.66192 -6.08884 -4.17923 0.96603 1.47383 1.98221 2.47372 3.21533 3.25446 3.33502 3.35945 3.80729 4.06682 4.23146 4.46822 4.70808 4.81384 4.95348 5.02291 5.19163 5.22535 5.29685 5.34618 5.43280 5.61712 5.70279 5.92453 6.11362 6.16396 6.37285 6.44540 6.46509 6.52405 6.56044 6.72401 6.75541 7.10508 7.26910 7.34942 7.43180 7.53079 7.67098 7.80049 7.95863 8.22916 8.75089 8.83490 9.22973 9.49872 10.96337 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014595 B = 0.003962 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.022370 B = 7065.828533 C = 7975.148395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.521 3.479 15 O -0.536 6.536 16 C -0.195 4.195 17 C -0.037 4.037 18 C -0.068 4.068 19 C 0.004 3.996 20 C -0.070 4.070 21 Cl -0.076 7.076 22 C -0.068 4.068 23 C -0.207 4.207 24 C 0.141 3.859 25 O -0.312 6.312 26 C 0.028 3.972 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.019 0.981 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.387 0.613 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.531 8.505 8.788 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.307 3.693 15 O -0.417 6.417 16 C -0.216 4.216 17 C -0.057 4.057 18 C -0.069 4.069 19 C -0.014 4.014 20 C -0.097 4.097 21 Cl -0.047 7.047 22 C -0.087 4.087 23 C -0.226 4.226 24 C 0.095 3.905 25 O -0.225 6.225 26 C -0.068 4.068 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.219 0.781 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.880 8.358 7.968 18.835 hybrid contribution 1.201 -0.229 -0.045 1.224 sum -13.679 8.129 7.922 17.775 Atomic orbital electron populations 1.21817 0.98284 0.97784 1.01304 1.21922 0.92634 0.99880 1.02087 1.18758 0.94055 0.89134 0.81118 0.93202 1.21280 0.90840 1.38837 1.06196 0.92122 1.24878 0.98467 0.94874 0.95430 1.69908 1.34944 1.37685 1.09331 0.86435 0.85088 0.77727 0.78100 1.19764 1.20928 1.20918 1.46498 1.14411 1.55527 1.18386 1.18286 0.82948 0.80213 0.87810 1.90854 1.50724 1.59993 1.40101 1.23328 0.98169 1.00928 0.99125 1.21949 0.92604 0.95065 0.96048 1.17967 0.89711 1.03999 0.95215 1.20808 0.98807 0.92504 0.89329 1.20497 0.93099 1.06489 0.89631 1.98354 1.80701 1.84027 1.41652 1.20746 0.92524 0.97183 0.98228 1.20904 1.00285 1.07935 0.93447 1.19038 0.91151 0.93952 0.86340 1.86009 1.23429 1.77676 1.35354 1.23049 0.79422 1.00695 1.03597 0.94149 0.93218 0.96196 0.88438 0.95226 0.92692 0.78075 0.85451 0.85045 0.84966 0.85295 0.85101 0.88364 0.92750 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.63 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.37 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.70 -14.37 5.02 -56.38 -0.28 -14.65 16 14 C 0.52 10.05 5.57 -13.05 -0.07 9.97 16 15 O -0.54 -11.77 9.57 5.17 0.05 -11.72 16 16 C -0.19 -2.87 9.95 -37.52 -0.37 -3.24 16 17 C -0.04 -0.51 9.33 -37.21 -0.35 -0.85 16 18 C -0.07 -1.05 4.32 -104.94 -0.45 -1.51 16 19 C 0.00 0.07 6.54 -39.09 -0.26 -0.18 16 20 C -0.07 -1.12 6.31 -39.56 -0.25 -1.37 16 21 Cl -0.08 -1.20 28.94 -51.86 -1.50 -2.70 16 22 C -0.07 -0.94 9.81 -39.47 -0.39 -1.32 16 23 C -0.21 -2.66 9.03 -39.49 -0.36 -3.02 16 24 C 0.14 2.01 6.70 -38.64 -0.26 1.75 16 25 O -0.31 -3.96 9.95 -18.82 -0.19 -4.14 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 28 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.39 6.94 8.52 -40.82 -0.35 6.60 16 34 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.13 2.29 7.53 -52.49 -0.39 1.89 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.13 1.29 6.30 -52.49 -0.33 0.95 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 41 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -30.86 352.55 -8.50 -39.36 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.35 Total: 7.65 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.14 Total: -10.60 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.34 Total: -38.87 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.14 Total: -15.86 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.50 Total: -2.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.86 -8.50 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492578924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.431 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds