Wall clock time and date at job start Tue Mar 31 2020 14:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47516 * 2 1 4 4 H 1.08995 * 109.47291 * 305.00551 * 3 2 1 5 5 C 1.50692 * 109.47120 * 184.99795 * 3 2 1 6 6 H 1.07998 * 120.00384 * 240.00001 * 5 3 2 7 7 C 1.37885 * 119.99914 * 60.00999 * 5 3 2 8 8 N 1.31511 * 119.99586 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00072 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47458 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47413 * 119.99723 * 9 7 5 12 12 H 1.48498 * 109.47020 * 239.99481 * 9 7 5 13 13 N 1.46508 * 109.46485 * 65.00366 * 3 2 1 14 14 C 1.34776 * 119.99868 * 274.99652 * 13 3 2 15 15 O 1.21720 * 120.00126 * 0.02562 * 14 13 3 16 16 C 1.46236 * 120.00178 * 180.02562 * 14 13 3 17 17 C 1.34996 * 120.00541 * 173.29439 * 16 14 13 18 18 C 1.46942 * 119.99803 * 349.93059 * 17 16 14 19 19 C 1.39927 * 120.20629 * 310.57110 * 18 17 16 20 20 C 1.37860 * 119.86865 * 179.72508 * 19 18 17 21 21 Cl 1.73601 * 119.85266 * 180.29698 * 20 19 18 22 22 C 1.38667 * 120.29060 * 0.27052 * 20 19 18 23 23 C 1.38122 * 120.42535 * 0.02562 * 22 20 19 24 24 C 1.38601 * 120.12334 * 359.97438 * 23 22 20 25 25 O 1.35706 * 120.14578 * 180.02562 * 24 23 22 26 26 C 1.42904 * 117.00272 * 359.97438 * 25 24 23 27 27 H 1.09006 * 109.46820 * 299.99699 * 1 2 3 28 28 H 1.08995 * 109.46941 * 59.99304 * 1 2 3 29 29 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46820 * 240.00300 * 2 1 3 31 31 H 1.08995 * 109.46941 * 120.00696 * 2 1 3 32 32 H 0.97002 * 120.00186 * 180.02562 * 8 7 5 33 33 H 0.96998 * 119.99680 * 95.00519 * 13 3 2 34 34 H 1.08003 * 119.99774 * 353.29587 * 16 14 13 35 35 H 1.08003 * 119.99958 * 169.92495 * 17 16 14 36 36 H 1.07996 * 120.06330 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.78682 * 179.97438 * 22 20 19 38 38 H 1.07999 * 119.93823 * 180.02562 * 23 22 20 39 39 H 1.08996 * 109.46918 * 179.97438 * 26 25 24 40 40 H 1.08998 * 109.47177 * 300.00151 * 26 25 24 41 41 H 1.09001 * 109.46763 * 60.00115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8417 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3368 -2.1730 9 14 6.0049 0.8811 -1.3819 10 1 6.5988 1.5469 -0.1948 11 1 6.4970 -0.5176 -1.4632 12 1 6.3990 1.6166 -2.6102 13 7 1.6526 2.0973 1.2520 14 6 0.4353 2.6643 1.3672 15 8 -0.3422 2.6319 0.4312 16 6 0.0486 3.3185 2.6166 17 6 -1.1128 4.0027 2.6890 18 6 -1.8798 4.2797 1.4666 19 6 -1.2450 4.8266 0.3460 20 6 -1.9701 5.0784 -0.7991 21 17 -1.1805 5.7498 -2.1918 22 6 -3.3272 4.7973 -0.8436 23 6 -3.9673 4.2630 0.2576 24 6 -3.2552 4.0029 1.4178 25 8 -3.8835 3.4775 2.4999 26 6 -5.2829 3.2168 2.3744 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8292 -0.0616 -2.9497 33 1 2.2722 2.1229 1.9979 34 1 0.6924 3.2543 3.4814 35 1 -1.4784 4.3463 3.6455 36 1 -0.1882 5.0472 0.3768 37 1 -3.8875 4.9982 -1.7448 38 1 -5.0245 4.0467 0.2142 39 1 -5.6598 2.7991 3.3079 40 1 -5.8074 4.1466 2.1540 41 1 -5.4488 2.5055 1.5653 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492578924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:03 Heat of formation + Delta-G solvation = -53.345907 kcal Electronic energy + Delta-G solvation = -25351.149688 eV Core-core repulsion = 21643.192161 eV Total energy + Delta-G solvation = -3707.957527 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.35925 -40.40169 -38.57593 -37.29884 -36.77898 -34.68574 -34.21881 -32.78924 -31.09944 -30.63061 -28.91306 -28.00493 -25.60313 -24.58483 -23.05967 -22.87633 -21.32349 -20.55956 -19.28705 -18.50169 -17.82774 -17.24571 -17.20463 -16.65989 -16.62729 -16.10355 -15.91716 -15.41878 -15.03209 -14.80352 -14.69659 -14.43541 -14.13473 -13.71996 -13.69740 -13.39798 -13.18092 -13.06359 -12.93773 -12.82149 -12.71955 -12.69277 -12.18931 -12.13563 -12.01965 -11.72723 -11.60128 -11.55443 -11.00725 -10.86465 -10.58014 -10.41510 -9.56906 -9.28796 -8.87673 -8.14401 -6.31084 -0.17244 0.34171 0.84010 1.28629 1.43022 1.44484 1.55930 2.32766 2.38510 2.60517 2.72211 2.85789 3.15362 3.67889 3.81349 4.10240 4.15959 4.23176 4.44608 4.44891 4.48871 4.51055 4.59336 4.61686 4.77427 4.77926 4.83621 5.01635 5.07871 5.10618 5.25069 5.29474 5.34628 5.46710 5.48164 5.59323 5.65343 5.70975 5.84519 6.01669 6.20913 6.39977 6.78533 7.14076 7.36844 7.73275 8.90869 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.014595 B = 0.003962 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.022370 B = 7065.828533 C = 7975.148395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.119 4.119 3 C 0.283 3.717 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.704 5.704 14 C 0.515 3.485 15 O -0.567 6.567 16 C -0.207 4.207 17 C -0.017 4.017 18 C -0.092 4.092 19 C -0.013 4.013 20 C -0.092 4.092 21 Cl -0.087 7.087 22 C -0.070 4.070 23 C -0.202 4.202 24 C 0.140 3.860 25 O -0.322 6.322 26 C 0.016 3.984 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.401 0.599 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 8.604 11.068 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.158 4.158 3 C 0.180 3.820 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.352 5.352 14 C 0.305 3.695 15 O -0.449 6.449 16 C -0.227 4.227 17 C -0.037 4.037 18 C -0.093 4.093 19 C -0.032 4.032 20 C -0.118 4.118 21 Cl -0.059 7.059 22 C -0.089 4.089 23 C -0.221 4.221 24 C 0.094 3.906 25 O -0.235 6.235 26 C -0.078 4.078 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.182 0.818 35 H 0.186 0.814 36 H 0.129 0.871 37 H 0.168 0.832 38 H 0.183 0.817 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.999 8.471 10.293 20.825 hybrid contribution 1.361 -0.225 -0.748 1.569 sum -14.638 8.246 9.544 19.323 Atomic orbital electron populations 1.21613 0.96938 0.98645 1.00187 1.21767 0.93713 0.99422 1.00932 1.18252 0.93280 0.88930 0.81586 0.98467 1.21635 0.91707 1.38582 1.06504 0.91229 1.25743 1.03084 0.94507 0.95104 1.70062 1.36850 1.38523 1.09869 0.85378 0.79494 0.77796 0.78158 1.18441 1.20451 1.21160 1.46256 1.15555 1.56075 1.17314 1.19030 0.81926 0.79515 0.89067 1.90845 1.51454 1.60834 1.41722 1.23271 0.99485 1.02074 0.97870 1.22359 0.91436 0.93065 0.96827 1.18226 0.90899 1.04584 0.95600 1.20720 0.98037 0.93998 0.90457 1.20726 0.94171 1.07674 0.89273 1.98339 1.81110 1.84257 1.42159 1.21057 0.91749 0.96573 0.99521 1.21295 1.01855 1.06471 0.92462 1.19154 0.90922 0.93318 0.87217 1.85994 1.25718 1.77143 1.34668 1.23407 0.77261 1.01945 1.05186 0.93648 0.95807 0.94187 0.91331 0.94375 0.92762 0.76482 0.81802 0.81375 0.87060 0.83160 0.81703 0.86007 0.90825 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.51 71.98 0.61 -4.78 16 2 C -0.12 -6.01 5.45 30.60 0.17 -5.84 16 3 C 0.28 14.65 2.24 44.24 0.10 14.75 16 4 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 5 C -0.55 -29.26 8.73 25.60 0.22 -29.04 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.91 -53.21 11.29 21.45 0.24 -52.97 16 9 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.70 -29.10 5.02 -450.51 -2.26 -31.36 16 14 C 0.52 19.99 5.57 86.32 0.48 20.47 16 15 O -0.57 -25.60 9.57 -4.41 -0.04 -25.64 16 16 C -0.21 -5.74 9.95 23.60 0.23 -5.50 16 17 C -0.02 -0.44 9.33 23.81 0.22 -0.22 16 18 C -0.09 -2.78 4.32 -20.07 -0.09 -2.87 16 19 C -0.01 -0.44 6.54 22.59 0.15 -0.30 16 20 C -0.09 -2.98 6.31 22.28 0.14 -2.84 16 21 Cl -0.09 -2.86 28.94 -2.72 -0.08 -2.94 16 22 C -0.07 -1.88 9.81 22.34 0.22 -1.66 16 23 C -0.20 -4.78 9.03 22.33 0.20 -4.58 16 24 C 0.14 3.74 6.70 22.88 0.15 3.89 16 25 O -0.32 -7.22 9.95 -90.27 -0.90 -8.12 16 26 C 0.02 0.21 9.81 113.37 1.11 1.32 16 27 H 0.04 2.03 5.64 -2.38 -0.01 2.02 16 28 H 0.02 1.18 7.84 -2.39 -0.02 1.16 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 3.87 5.95 -2.38 -0.01 3.86 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.40 14.14 8.52 -92.71 -0.79 13.35 16 34 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.11 4.12 7.53 -2.91 -0.02 4.09 16 37 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 38 H 0.17 2.65 6.30 -2.91 -0.02 2.63 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 41 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 Total: -1.00 -69.84 352.55 3.63 -66.20 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.27 Total: 25.88 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.38 Total: -15.90 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.02 Total: -84.33 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.94 Total: -33.76 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -0.08 Total: -2.94 kcal Total: -69.84 3.63 -66.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492578924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.859 kcal (2) G-P(sol) polarization free energy of solvation -69.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds