Wall clock time and date at job start Tue Mar 31 2020 14:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50698 * 119.99818 * 2 1 4 4 N 1.46497 * 109.47008 * 125.00132 * 3 2 1 5 5 C 1.46500 * 120.00112 * 89.99720 * 4 3 2 6 6 C 1.50698 * 109.47141 * 89.99986 * 5 4 3 7 7 H 1.08001 * 119.99984 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00119 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99674 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00201 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46836 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47044 * 120.00308 * 10 8 6 13 13 H 1.48504 * 109.47086 * 240.00535 * 10 8 6 14 14 C 1.34777 * 119.99713 * 270.27213 * 4 3 2 15 15 O 1.21593 * 119.99883 * 179.72098 * 14 4 3 16 16 N 1.34768 * 120.00224 * 359.72759 * 14 4 3 17 17 C 1.40082 * 120.00222 * 174.37047 * 16 14 4 18 18 C 1.38799 * 120.07608 * 335.22715 * 17 16 14 19 19 C 1.38145 * 119.95424 * 179.70139 * 18 17 16 20 20 C 1.38284 * 120.11036 * 0.57408 * 19 18 17 21 21 N 1.48023 * 119.92276 * 179.70304 * 20 19 18 22 22 O 1.21803 * 119.99643 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99768 * 0.02562 * 21 20 19 24 24 C 1.38264 * 120.15308 * 359.72175 * 20 19 18 25 25 C 1.38314 * 120.04810 * 359.97438 * 24 20 19 26 26 F 1.35095 * 120.05808 * 180.02562 * 25 24 20 27 27 H 1.07995 * 120.00220 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99804 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99668 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47104 * 4.99807 * 3 2 1 31 31 H 1.09007 * 109.46824 * 244.99504 * 3 2 1 32 32 H 1.09002 * 109.47089 * 209.99809 * 5 4 3 33 33 H 1.08999 * 109.47440 * 330.00058 * 5 4 3 34 34 H 0.97003 * 119.99696 * 179.97438 * 9 8 6 35 35 H 0.97005 * 119.99708 * 354.36079 * 16 14 4 36 36 H 1.07998 * 120.02073 * 359.97438 * 18 17 16 37 37 H 1.08005 * 119.94773 * 180.26911 * 19 18 17 38 38 H 1.08004 * 119.97705 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3589 0.8256 0.9694 6 6 5.2616 1.9479 0.5259 7 1 4.8587 2.9393 0.3798 8 6 6.6020 1.7094 0.3077 9 7 7.0926 0.5023 0.4862 10 14 7.7210 3.1007 -0.2413 11 1 6.9302 4.3513 -0.3680 12 1 8.7974 3.2958 0.7629 13 1 8.3249 2.7612 -1.5549 14 6 2.5919 1.8172 2.3228 15 8 3.3625 1.8347 3.2633 16 7 1.3361 2.2829 2.4719 17 6 0.8808 2.6773 3.7365 18 6 1.4603 2.1473 4.8810 19 6 1.0135 2.5428 6.1269 20 6 -0.0183 3.4569 6.2359 21 7 -0.4982 3.8727 7.5731 22 8 -1.4073 4.6775 7.6706 23 8 0.0160 3.4101 8.5756 24 6 -0.6030 3.9831 5.0989 25 6 -0.1565 3.5965 3.8482 26 9 -0.7274 4.1109 2.7371 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 4.7141 0.4278 1.9201 33 1 4.3667 0.0351 0.2191 34 1 8.0355 0.3344 0.3323 35 1 0.7475 2.3450 1.7033 36 1 2.2630 1.4296 4.7974 37 1 1.4675 2.1336 7.0174 38 1 -1.4085 4.6972 5.1873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493795897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:05 Heat of formation + Delta-G solvation = -12.756612 kcal Electronic energy + Delta-G solvation = -26808.364558 eV Core-core repulsion = 22570.290397 eV Total energy + Delta-G solvation = -4238.074161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.38332 -42.25812 -40.78278 -38.94114 -36.64786 -36.23612 -35.14383 -33.42204 -32.39418 -31.29167 -30.76382 -27.80864 -26.54892 -25.64377 -23.83023 -23.33236 -22.25851 -20.57887 -19.74517 -19.53452 -18.92754 -18.43529 -17.63013 -17.51418 -16.74627 -16.70968 -16.45338 -16.10421 -15.54433 -15.07976 -14.78424 -14.48135 -14.34299 -13.95596 -13.63663 -13.43385 -13.17562 -13.02976 -12.48037 -12.32720 -11.96031 -11.65804 -11.50461 -11.34557 -11.31053 -11.23068 -11.10834 -10.94459 -10.75698 -10.34980 -9.89464 -9.79938 -9.54876 -9.38948 -8.68533 -8.59041 -8.02413 -6.20720 -4.26353 -0.34140 0.55523 1.15233 1.25401 2.10206 2.54120 2.84608 3.20184 3.28729 3.31711 3.43662 3.56517 4.00039 4.09279 4.31011 4.32473 4.48946 4.83935 4.87331 4.91759 4.98994 5.14614 5.33696 5.39444 5.45150 5.69028 5.75303 5.86132 5.91345 6.19525 6.26598 6.43253 6.49596 6.63557 7.01409 7.15987 7.30645 7.55175 7.74879 8.01580 8.10489 8.64552 8.80924 9.39738 10.87296 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.003406 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.367850 B = 8219.821037 C = 9296.083719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.131 3.869 4 N -0.592 5.592 5 C 0.258 3.742 6 C -0.533 4.533 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.699 3.301 15 O -0.556 6.556 16 N -0.681 5.681 17 C 0.219 3.781 18 C -0.113 4.113 19 C -0.032 4.032 20 C -0.059 4.059 21 N 0.037 4.963 22 O -0.169 6.169 23 O -0.161 6.161 24 C -0.064 4.064 25 C 0.053 3.947 26 F -0.124 7.124 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.411 0.589 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.426 1.404 2.920 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.180 4.180 3 C 0.007 3.993 4 N -0.325 5.325 5 C 0.140 3.860 6 C -0.572 4.572 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.401 3.599 15 O -0.431 6.431 16 N -0.328 5.328 17 C 0.116 3.884 18 C -0.134 4.134 19 C -0.052 4.052 20 C -0.144 4.144 21 N 0.555 4.445 22 O -0.383 6.383 23 O -0.376 6.376 24 C -0.084 4.084 25 C 0.030 3.970 26 F -0.102 7.102 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.250 0.750 36 H 0.201 0.799 37 H 0.179 0.821 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.339 1.053 2.743 15.618 hybrid contribution 0.100 1.027 -0.773 1.289 sum -15.239 2.079 1.970 15.506 Atomic orbital electron populations 1.23801 0.95668 1.01792 1.02087 1.23545 0.96051 0.99875 0.98483 1.20641 0.92273 0.93887 0.92464 1.47690 1.15376 1.62375 1.07083 1.19389 0.73367 0.94549 0.98722 1.21432 0.93459 0.95922 1.46409 0.92327 1.24915 0.97865 0.95873 0.95212 1.69927 1.14285 1.20171 1.48630 0.86425 0.80604 0.82039 0.78254 1.19824 1.20754 1.20847 1.15905 0.80134 0.78985 0.84899 1.90886 1.52410 1.60822 1.39025 1.43225 1.15289 1.66129 1.08171 1.18020 0.92058 0.91227 0.87089 1.21579 1.01932 1.01736 0.88164 1.21060 0.91754 0.92481 0.99953 1.20640 1.04121 1.07417 0.82200 1.43453 0.99332 0.98873 1.02843 1.94528 1.21652 1.28597 1.93502 1.94546 1.59051 1.57456 1.26573 1.20550 0.99991 0.99267 0.88623 1.16804 0.98566 0.98774 0.82891 1.91538 1.83564 1.85427 1.49717 0.88281 0.88861 0.86544 0.91817 0.87906 0.93358 0.94286 0.92560 0.75031 0.79896 0.82055 0.81686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 14.32 29.01 0.42 -1.44 16 2 C -0.16 -1.90 9.85 -36.03 -0.35 -2.25 16 3 C 0.13 1.80 5.66 -5.20 -0.03 1.77 16 4 N -0.59 -10.91 2.44 -182.19 -0.44 -11.36 16 5 C 0.26 6.04 5.16 -5.19 -0.03 6.02 16 6 C -0.53 -13.98 9.39 -34.44 -0.32 -14.31 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 10 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.70 12.73 8.08 -86.93 -0.70 12.03 16 15 O -0.56 -12.02 13.08 5.28 0.07 -11.95 16 16 N -0.68 -9.40 5.19 -14.16 -0.07 -9.48 16 17 C 0.22 2.82 6.44 -83.58 -0.54 2.28 16 18 C -0.11 -1.45 8.72 -39.41 -0.34 -1.79 16 19 C -0.03 -0.37 9.55 -39.60 -0.38 -0.75 16 20 C -0.06 -0.69 6.85 -79.92 -0.55 -1.24 16 21 N 0.04 0.49 4.45 33.98 0.15 0.65 16 22 O -0.17 -2.31 18.44 -29.46 -0.54 -2.85 16 23 O -0.16 -2.24 18.44 -29.46 -0.54 -2.78 16 24 C -0.06 -0.68 9.53 -39.54 -0.38 -1.05 16 25 C 0.05 0.60 7.31 -39.25 -0.29 0.31 16 26 F -0.12 -1.35 16.81 2.25 0.04 -1.31 16 27 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.09 0.75 7.84 -52.49 -0.41 0.34 16 29 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.06 0.71 5.94 -51.93 -0.31 0.41 16 31 H 0.10 1.47 8.07 -51.93 -0.42 1.05 16 32 H 0.05 1.28 7.41 -51.93 -0.38 0.89 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.41 4.68 6.14 -40.82 -0.25 4.43 16 36 H 0.18 2.67 5.79 -52.49 -0.30 2.37 16 37 H 0.16 1.57 7.60 -52.48 -0.40 1.17 16 38 H 0.17 1.46 7.60 -52.48 -0.40 1.06 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -29.91 346.03 -7.69 -37.60 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -3.69 Total: 3.45 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -3.59 Total: 1.20 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.37 Total: -44.37 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.02 Total: -17.59 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.91 -7.69 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493795897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.844 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds