Wall clock time and date at job start Tue Mar 31 2020 14:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50698 * 119.99818 * 2 1 4 4 N 1.46497 * 109.47008 * 125.00132 * 3 2 1 5 5 C 1.46500 * 120.00112 * 89.99720 * 4 3 2 6 6 C 1.50698 * 109.47141 * 89.99986 * 5 4 3 7 7 H 1.08001 * 119.99984 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00119 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99674 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00201 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46836 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47044 * 120.00308 * 10 8 6 13 13 H 1.48504 * 109.47086 * 240.00535 * 10 8 6 14 14 C 1.34777 * 119.99713 * 270.27213 * 4 3 2 15 15 O 1.21593 * 119.99883 * 179.72098 * 14 4 3 16 16 N 1.34768 * 120.00224 * 359.72759 * 14 4 3 17 17 C 1.40082 * 120.00222 * 174.37047 * 16 14 4 18 18 C 1.38799 * 120.07608 * 335.22715 * 17 16 14 19 19 C 1.38145 * 119.95424 * 179.70139 * 18 17 16 20 20 C 1.38284 * 120.11036 * 0.57408 * 19 18 17 21 21 N 1.48023 * 119.92276 * 179.70304 * 20 19 18 22 22 O 1.21803 * 119.99643 * 180.02562 * 21 20 19 23 23 O 1.21803 * 119.99768 * 0.02562 * 21 20 19 24 24 C 1.38264 * 120.15308 * 359.72175 * 20 19 18 25 25 C 1.38314 * 120.04810 * 359.97438 * 24 20 19 26 26 F 1.35095 * 120.05808 * 180.02562 * 25 24 20 27 27 H 1.07995 * 120.00220 * 179.97438 * 1 2 3 28 28 H 1.08002 * 119.99804 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99668 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47104 * 4.99807 * 3 2 1 31 31 H 1.09007 * 109.46824 * 244.99504 * 3 2 1 32 32 H 1.09002 * 109.47089 * 209.99809 * 5 4 3 33 33 H 1.08999 * 109.47440 * 330.00058 * 5 4 3 34 34 H 0.97003 * 119.99696 * 179.97438 * 9 8 6 35 35 H 0.97005 * 119.99708 * 354.36079 * 16 14 4 36 36 H 1.07998 * 120.02073 * 359.97438 * 18 17 16 37 37 H 1.08005 * 119.94773 * 180.26911 * 19 18 17 38 38 H 1.08004 * 119.97705 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3589 0.8256 0.9694 6 6 5.2616 1.9479 0.5259 7 1 4.8587 2.9393 0.3798 8 6 6.6020 1.7094 0.3077 9 7 7.0926 0.5023 0.4862 10 14 7.7210 3.1007 -0.2413 11 1 6.9302 4.3513 -0.3680 12 1 8.7974 3.2958 0.7629 13 1 8.3249 2.7612 -1.5549 14 6 2.5919 1.8172 2.3228 15 8 3.3625 1.8347 3.2633 16 7 1.3361 2.2829 2.4719 17 6 0.8808 2.6773 3.7365 18 6 1.4603 2.1473 4.8810 19 6 1.0135 2.5428 6.1269 20 6 -0.0183 3.4569 6.2359 21 7 -0.4982 3.8727 7.5731 22 8 -1.4073 4.6775 7.6706 23 8 0.0160 3.4101 8.5756 24 6 -0.6030 3.9831 5.0989 25 6 -0.1565 3.5965 3.8482 26 9 -0.7274 4.1109 2.7371 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4025 -0.9314 32 1 4.7141 0.4278 1.9201 33 1 4.3667 0.0351 0.2191 34 1 8.0355 0.3344 0.3323 35 1 0.7475 2.3450 1.7033 36 1 2.2630 1.4296 4.7974 37 1 1.4675 2.1336 7.0174 38 1 -1.4085 4.6972 5.1873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493795897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:04 Heat of formation + Delta-G solvation = -28.466563 kcal Electronic energy + Delta-G solvation = -26809.045793 eV Core-core repulsion = 22570.290397 eV Total energy + Delta-G solvation = -4238.755396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.28050 -43.28687 -42.04124 -40.06308 -37.69656 -37.53875 -36.41497 -35.06140 -33.83946 -32.27888 -31.87259 -29.51230 -27.63626 -26.91982 -25.18091 -24.63341 -23.43437 -21.72544 -20.76205 -20.61013 -20.05467 -19.56786 -18.74144 -18.65305 -18.61107 -17.67880 -17.51356 -17.05130 -17.00700 -16.58791 -16.09985 -15.66556 -15.43278 -15.16361 -14.92760 -14.52305 -14.29538 -14.13694 -14.01617 -13.52987 -13.29043 -13.09209 -12.85532 -12.71669 -12.53983 -12.40483 -12.32645 -12.29933 -12.20273 -12.16520 -11.70012 -11.29115 -10.65709 -10.45826 -10.37486 -9.89199 -9.47263 -8.24539 -6.38167 -1.36632 -0.36781 0.10800 0.24786 1.11519 1.36532 1.39127 1.42812 1.50177 1.74420 2.16983 2.36689 2.60187 2.78272 3.06966 3.15049 3.39429 3.50728 3.85307 3.91938 3.97766 4.01648 4.43403 4.47750 4.52155 4.66345 4.70483 4.83699 4.88041 5.02808 5.13114 5.18069 5.38125 5.44672 5.60159 5.64336 5.73358 5.83845 6.01837 6.47661 6.69968 6.73495 7.23156 7.37314 8.82503 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013808 B = 0.003406 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.367850 B = 8219.821037 C = 9296.083719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.189 4.189 3 C 0.130 3.870 4 N -0.599 5.599 5 C 0.277 3.723 6 C -0.544 4.544 7 H 0.053 0.947 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.962 3.038 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.698 3.302 15 O -0.598 6.598 16 N -0.666 5.666 17 C 0.205 3.795 18 C -0.120 4.120 19 C -0.023 4.023 20 C -0.060 4.060 21 N 0.038 4.962 22 O -0.166 6.166 23 O -0.180 6.180 24 C -0.050 4.050 25 C 0.068 3.932 26 F -0.116 7.116 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.009 0.991 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.424 0.576 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.697 2.931 2.317 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C 0.008 3.992 4 N -0.331 5.331 5 C 0.156 3.844 6 C -0.582 4.582 7 H 0.072 0.928 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.788 3.212 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.401 3.599 15 O -0.477 6.477 16 N -0.314 5.314 17 C 0.103 3.897 18 C -0.142 4.142 19 C -0.043 4.043 20 C -0.145 4.145 21 N 0.554 4.446 22 O -0.382 6.382 23 O -0.391 6.391 24 C -0.070 4.070 25 C 0.044 3.956 26 F -0.095 7.095 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.027 0.973 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.265 0.735 36 H 0.181 0.819 37 H 0.192 0.808 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -17.668 2.577 2.140 17.983 hybrid contribution 0.657 0.554 -0.556 1.024 sum -17.011 3.132 1.584 17.370 Atomic orbital electron populations 1.24084 0.94576 1.03629 0.97631 1.23259 0.96865 0.98232 1.02520 1.20848 0.91903 0.96202 0.90233 1.47496 1.14500 1.62337 1.08762 1.18781 0.75880 0.93687 0.96062 1.21720 0.94238 0.96246 1.46030 0.92838 1.25740 0.99407 0.98115 0.95357 1.70032 1.14710 1.21967 1.49665 0.85443 0.78502 0.79229 0.78073 1.19338 1.20940 1.19621 1.15974 0.81119 0.78713 0.84140 1.90864 1.54087 1.62417 1.40363 1.42803 1.13807 1.65623 1.09178 1.18148 0.92920 0.92153 0.86451 1.21357 1.01856 1.01984 0.88974 1.21100 0.91395 0.91995 0.99807 1.20681 1.04298 1.07603 0.81877 1.43594 0.99184 0.98697 1.03166 1.94518 1.21578 1.28446 1.93648 1.94556 1.59472 1.57996 1.27115 1.20743 0.99817 0.98749 0.87681 1.16608 0.97704 0.97971 0.83294 1.91564 1.83315 1.85209 1.49408 0.86756 0.86531 0.88213 0.88749 0.88989 0.97329 0.95040 0.92373 0.73490 0.81944 0.80839 0.79328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 14.32 67.77 0.97 -1.61 16 2 C -0.19 -4.31 9.85 25.64 0.25 -4.06 16 3 C 0.13 3.50 5.66 85.63 0.48 3.99 16 4 N -0.60 -22.56 2.44 -848.58 -2.07 -24.63 16 5 C 0.28 13.59 5.16 85.63 0.44 14.03 16 6 C -0.54 -29.24 9.39 25.60 0.24 -29.00 16 7 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 8 C 0.01 0.73 5.46 84.66 0.46 1.20 16 9 N -0.92 -53.05 13.29 21.45 0.28 -52.76 16 10 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 14 C 0.70 25.83 8.08 179.06 1.45 27.27 16 15 O -0.60 -26.98 13.08 -4.01 -0.05 -27.03 16 16 N -0.67 -17.59 5.19 -316.99 -1.65 -19.24 16 17 C 0.20 4.99 6.44 38.15 0.25 5.23 16 18 C -0.12 -3.06 8.72 22.38 0.20 -2.87 16 19 C -0.02 -0.50 9.55 22.26 0.21 -0.29 16 20 C -0.06 -1.28 6.85 36.39 0.25 -1.03 16 21 N 0.04 0.93 4.45 -46.42 -0.21 0.72 16 22 O -0.17 -4.16 18.44 18.88 0.35 -3.81 16 23 O -0.18 -4.80 18.44 18.88 0.35 -4.45 16 24 C -0.05 -0.90 9.53 22.29 0.21 -0.69 16 25 C 0.07 1.34 7.31 22.48 0.16 1.50 16 26 F -0.12 -2.12 16.81 44.97 0.76 -1.37 16 27 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 28 H 0.12 1.34 7.84 -2.91 -0.02 1.32 16 29 H 0.10 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.09 1.90 5.94 -2.39 -0.01 1.88 16 31 H 0.09 2.64 8.07 -2.38 -0.02 2.62 16 32 H 0.01 0.49 7.41 -2.39 -0.02 0.47 16 33 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 34 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.42 8.61 6.14 -92.70 -0.57 8.04 16 36 H 0.16 4.98 5.79 -2.91 -0.02 4.96 16 37 H 0.17 3.27 7.60 -2.91 -0.02 3.24 16 38 H 0.19 2.58 7.60 -2.91 -0.02 2.55 16 Total: -1.00 -66.33 346.03 5.92 -60.41 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.56 Total: 13.41 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 5.58 Total: 13.67 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -3.64 Total: -95.92 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: 0.64 Total: -35.29 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.76 Total: -1.37 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -66.33 5.92 -60.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493795897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.943 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds