Wall clock time and date at job start Tue Mar 31 2020 14:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 N 1.46501 * 109.47208 * 119.99642 * 2 1 3 5 5 C 1.46499 * 119.99987 * 300.00238 * 4 2 1 6 6 C 1.50702 * 109.47404 * 274.99683 * 5 4 2 7 7 H 1.08006 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00069 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00219 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99986 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46857 * 89.99624 * 10 8 6 12 12 H 1.48498 * 109.47311 * 209.99908 * 10 8 6 13 13 H 1.48502 * 109.46938 * 330.00193 * 10 8 6 14 14 S 1.65597 * 119.99908 * 119.99937 * 4 2 1 15 15 O 1.42099 * 106.40413 * 336.46561 * 14 4 2 16 16 O 1.42097 * 106.40576 * 203.53994 * 14 4 2 17 17 C 1.76203 * 107.21652 * 90.00221 * 14 4 2 18 18 C 1.34228 * 126.56849 * 115.02418 * 17 14 4 19 19 N 1.36915 * 109.91657 * 179.97438 * 18 17 14 20 20 H 0.97002 * 124.98830 * 180.02562 * 19 18 17 21 21 C 1.37421 * 110.02029 * 0.02562 * 19 18 17 22 22 N 1.32654 * 133.18498 * 180.02562 * 21 19 18 23 23 C 1.31591 * 121.67175 * 179.97438 * 22 21 19 24 24 C 1.38661 * 121.57724 * 0.02562 * 23 22 21 25 25 C 1.38192 * 119.41699 * 359.97438 * 24 23 22 26 26 C 1.39698 * 118.03853 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47141 * 300.00433 * 1 2 3 28 28 H 1.08994 * 109.47262 * 60.00168 * 1 2 3 29 29 H 1.08994 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47157 * 239.99827 * 2 1 3 31 31 H 1.09000 * 109.47008 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46990 * 299.99998 * 3 2 1 33 33 H 1.08995 * 109.47321 * 59.99928 * 3 2 1 34 34 H 1.08996 * 109.47311 * 35.00180 * 5 4 2 35 35 H 1.09003 * 109.46723 * 154.99963 * 5 4 2 36 36 H 0.96998 * 119.99915 * 179.97438 * 9 8 6 37 37 H 1.08001 * 125.04337 * 0.02562 * 18 17 14 38 38 H 1.08004 * 119.21135 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.28797 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.98296 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.6338 0.8907 2.9312 7 1 3.4333 1.1764 2.2637 8 6 2.5000 1.5146 4.1534 9 7 1.5267 1.1664 4.9664 10 14 3.7011 2.8547 4.6544 11 1 3.1876 4.1733 4.2041 12 1 3.8493 2.8595 6.1320 13 1 5.0213 2.5965 4.0253 14 16 2.9704 -2.0369 1.0443 15 8 2.6904 -2.5839 -0.2370 16 8 2.8228 -2.7711 2.2519 17 6 4.6445 -1.4892 0.9965 18 6 5.5962 -1.7459 1.9075 19 7 6.7727 -1.1548 1.5321 20 1 7.6027 -1.2009 2.0321 21 6 6.6051 -0.4866 0.3430 22 7 7.4221 0.2275 -0.4200 23 6 7.0131 0.7800 -1.5421 24 6 5.7058 0.6440 -1.9840 25 6 4.8077 -0.0888 -1.2316 26 6 5.2638 -0.6673 -0.0446 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 0.6540 0.2180 2.5045 35 1 1.7105 -1.0073 3.2465 36 1 1.4328 1.6051 5.8264 37 1 5.4551 -2.3324 2.8033 38 1 7.7123 1.3531 -2.1330 39 1 5.3923 1.1067 -2.9082 40 1 3.7835 -0.2107 -1.5517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523572078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:14 Heat of formation + Delta-G solvation = -3.288577 kcal Electronic energy + Delta-G solvation = -26718.065297 eV Core-core repulsion = 23046.614876 eV Total energy + Delta-G solvation = -3671.450420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45268 -37.83240 -36.91402 -36.49918 -35.18360 -32.96745 -32.79365 -30.61031 -30.12581 -29.25230 -26.96580 -26.52348 -23.71582 -22.85002 -22.56309 -21.78433 -20.23480 -18.54039 -17.81691 -17.06338 -16.79838 -16.50132 -16.05079 -15.46677 -15.15938 -15.02805 -14.57329 -14.47262 -13.75155 -13.64967 -13.24978 -13.08619 -12.86818 -12.35761 -12.30250 -12.14157 -12.07209 -11.74669 -11.46449 -11.46153 -11.17603 -11.07818 -10.97732 -10.89418 -10.81111 -10.49738 -10.45311 -10.28941 -9.85756 -9.57457 -9.35944 -8.50989 -8.46909 -8.32355 -8.00137 -6.09843 -4.13528 0.95699 1.19492 1.39331 2.33394 2.73950 3.22699 3.30614 3.32972 3.72580 3.93875 4.36654 4.39851 4.49589 4.62673 4.88117 4.96184 5.11474 5.23967 5.28196 5.37842 5.40946 5.63182 5.70636 5.75551 5.83786 6.04973 6.18484 6.26521 6.29734 6.32692 6.36245 6.50240 6.59653 6.79954 6.86978 7.14584 7.22561 7.40914 7.48002 7.70326 7.88648 8.00051 8.18924 8.91320 9.50959 10.98202 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.007116 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.944734 B = 3933.664471 C = 4750.295123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 C -0.161 4.161 4 N -0.975 5.975 5 C 0.244 3.756 6 C -0.530 4.530 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.890 5.890 10 Si 0.887 3.113 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.277 1.277 14 S 2.714 3.286 15 O -0.979 6.979 16 O -0.964 6.964 17 C -0.730 4.730 18 C 0.209 3.791 19 N -0.573 5.573 20 H 0.423 0.577 21 C 0.280 3.720 22 N -0.496 5.496 23 C 0.127 3.873 24 C -0.191 4.191 25 C -0.035 4.035 26 C -0.074 4.074 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.263 0.737 37 H 0.199 0.801 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -1.904 -10.917 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 C -0.220 4.220 4 N -0.815 5.815 5 C 0.122 3.878 6 C -0.569 4.569 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.529 5.529 10 Si 0.715 3.285 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.202 1.202 14 S 2.802 3.198 15 O -0.970 6.970 16 O -0.955 6.955 17 C -0.823 4.823 18 C 0.075 3.925 19 N -0.178 5.178 20 H 0.261 0.739 21 C 0.047 3.953 22 N -0.209 5.209 23 C -0.038 4.038 24 C -0.213 4.213 25 C -0.061 4.061 26 C -0.081 4.081 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.215 0.785 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.067 -2.643 -10.392 12.842 hybrid contribution 0.909 1.432 0.557 1.786 sum 7.976 -1.211 -9.834 12.720 Atomic orbital electron populations 1.22093 0.95345 1.01860 1.02238 1.20670 0.94595 0.93834 0.86614 1.22270 1.01234 0.96072 1.02377 1.57426 1.63003 1.47210 1.13851 1.19218 0.97187 0.95456 0.75916 1.21605 1.13728 1.19782 1.01784 0.91846 1.24900 0.95484 0.97035 0.96386 1.69925 1.31139 1.42042 1.09794 0.86680 0.81581 0.82514 0.77692 1.20635 1.21211 1.20233 1.01094 0.72531 0.73323 0.72820 1.93502 1.84271 1.76840 1.42342 1.93534 1.85844 1.69487 1.46616 1.32257 1.24809 1.20835 1.04371 1.21880 0.82426 0.91615 0.96588 1.41832 1.12677 1.44196 1.19061 0.73918 1.18395 0.91125 0.96760 0.89027 1.66446 1.37588 1.10622 1.06214 1.22407 0.94591 0.95885 0.90875 1.21845 0.94670 1.02678 1.02058 1.21141 1.00349 0.93192 0.91429 1.18977 0.93562 1.00141 0.95423 0.91230 0.92409 0.92801 0.90305 0.92805 0.93556 0.89638 0.93751 0.93009 0.92719 0.78467 0.82270 0.84247 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.16 37.16 0.34 -2.08 16 2 C 0.15 2.55 3.02 -67.93 -0.21 2.34 16 3 C -0.16 -2.67 8.04 37.16 0.30 -2.37 16 4 N -0.98 -19.49 2.73 -108.57 -0.30 -19.79 16 5 C 0.24 5.76 5.01 -5.19 -0.03 5.73 16 6 C -0.53 -13.35 7.53 -34.44 -0.26 -13.61 16 7 H 0.06 1.60 7.07 -52.48 -0.37 1.22 16 8 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 10 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 S 2.71 53.45 5.86 -107.50 -0.63 52.82 16 15 O -0.98 -19.78 16.58 -57.17 -0.95 -20.73 16 16 O -0.96 -21.13 16.31 -57.17 -0.93 -22.06 16 17 C -0.73 -13.14 6.38 -37.72 -0.24 -13.38 16 18 C 0.21 3.23 11.47 -16.70 -0.19 3.04 16 19 N -0.57 -8.17 6.05 -12.15 -0.07 -8.24 16 20 H 0.42 4.48 8.96 -40.82 -0.37 4.11 16 21 C 0.28 4.63 8.43 -155.69 -1.31 3.32 16 22 N -0.50 -7.70 10.39 -12.27 -0.13 -7.83 16 23 C 0.13 1.62 11.15 -17.50 -0.20 1.42 16 24 C -0.19 -2.36 10.10 -39.44 -0.40 -2.75 16 25 C -0.03 -0.53 8.87 -39.05 -0.35 -0.87 16 26 C -0.07 -1.29 6.38 -105.11 -0.67 -1.96 16 27 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.24 5.60 -51.93 -0.29 0.95 16 31 H 0.05 0.92 6.49 -51.93 -0.34 0.58 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.65 6.65 -51.93 -0.35 1.30 16 34 H 0.04 1.08 6.45 -51.93 -0.33 0.75 16 35 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.20 2.46 8.06 -52.49 -0.42 2.04 16 38 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 39 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 40 H 0.14 1.96 6.30 -52.49 -0.33 1.63 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -33.13 341.10 -10.21 -43.34 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.75 Total: 5.19 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -3.30 Total: -19.57 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.24 Total: -59.91 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.88 Total: -42.79 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 53.45 SS G_CDS: -0.63 Total: 52.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.13 -10.21 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523572078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.056 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds