Wall clock time and date at job start Tue Mar 31 2020 14:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 N 1.46501 * 109.47208 * 119.99642 * 2 1 3 5 5 C 1.46499 * 119.99987 * 300.00238 * 4 2 1 6 6 C 1.50702 * 109.47404 * 274.99683 * 5 4 2 7 7 H 1.08006 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00069 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00219 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99986 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46857 * 89.99624 * 10 8 6 12 12 H 1.48498 * 109.47311 * 209.99908 * 10 8 6 13 13 H 1.48502 * 109.46938 * 330.00193 * 10 8 6 14 14 S 1.65597 * 119.99908 * 119.99937 * 4 2 1 15 15 O 1.42099 * 106.40413 * 336.46561 * 14 4 2 16 16 O 1.42097 * 106.40576 * 203.53994 * 14 4 2 17 17 C 1.76203 * 107.21652 * 90.00221 * 14 4 2 18 18 C 1.34228 * 126.56849 * 115.02418 * 17 14 4 19 19 N 1.36915 * 109.91657 * 179.97438 * 18 17 14 20 20 H 0.97002 * 124.98830 * 180.02562 * 19 18 17 21 21 C 1.37421 * 110.02029 * 0.02562 * 19 18 17 22 22 N 1.32654 * 133.18498 * 180.02562 * 21 19 18 23 23 C 1.31591 * 121.67175 * 179.97438 * 22 21 19 24 24 C 1.38661 * 121.57724 * 0.02562 * 23 22 21 25 25 C 1.38192 * 119.41699 * 359.97438 * 24 23 22 26 26 C 1.39698 * 118.03853 * 359.97438 * 25 24 23 27 27 H 1.09004 * 109.47141 * 300.00433 * 1 2 3 28 28 H 1.08994 * 109.47262 * 60.00168 * 1 2 3 29 29 H 1.08994 * 109.46845 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47157 * 239.99827 * 2 1 3 31 31 H 1.09000 * 109.47008 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46990 * 299.99998 * 3 2 1 33 33 H 1.08995 * 109.47321 * 59.99928 * 3 2 1 34 34 H 1.08996 * 109.47311 * 35.00180 * 5 4 2 35 35 H 1.09003 * 109.46723 * 154.99963 * 5 4 2 36 36 H 0.96998 * 119.99915 * 179.97438 * 9 8 6 37 37 H 1.08001 * 125.04337 * 0.02562 * 18 17 14 38 38 H 1.08004 * 119.21135 * 180.02562 * 23 22 21 39 39 H 1.08004 * 120.28797 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.98296 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.6338 0.8907 2.9312 7 1 3.4333 1.1764 2.2637 8 6 2.5000 1.5146 4.1534 9 7 1.5267 1.1664 4.9664 10 14 3.7011 2.8547 4.6544 11 1 3.1876 4.1733 4.2041 12 1 3.8493 2.8595 6.1320 13 1 5.0213 2.5965 4.0253 14 16 2.9704 -2.0369 1.0443 15 8 2.6904 -2.5839 -0.2370 16 8 2.8228 -2.7711 2.2519 17 6 4.6445 -1.4892 0.9965 18 6 5.5962 -1.7459 1.9075 19 7 6.7727 -1.1548 1.5321 20 1 7.6027 -1.2009 2.0321 21 6 6.6051 -0.4866 0.3430 22 7 7.4221 0.2275 -0.4200 23 6 7.0131 0.7800 -1.5421 24 6 5.7058 0.6440 -1.9840 25 6 4.8077 -0.0888 -1.2316 26 6 5.2638 -0.6673 -0.0446 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 0.6540 0.2180 2.5045 35 1 1.7105 -1.0073 3.2465 36 1 1.4328 1.6051 5.8264 37 1 5.4551 -2.3324 2.8033 38 1 7.7123 1.3531 -2.1330 39 1 5.3923 1.1067 -2.9082 40 1 3.7835 -0.2107 -1.5517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523572078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:13 Heat of formation + Delta-G solvation = -26.008081 kcal Electronic energy + Delta-G solvation = -26719.050488 eV Core-core repulsion = 23046.614876 eV Total energy + Delta-G solvation = -3672.435612 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.58174 -38.94045 -38.41727 -38.11685 -36.80510 -34.75774 -34.06306 -32.19736 -31.25016 -30.38594 -28.79547 -27.86627 -24.81226 -24.71198 -23.65694 -23.10135 -21.68126 -19.69523 -19.37331 -18.59714 -18.44135 -17.93226 -17.22630 -16.92617 -16.69331 -16.26850 -16.18531 -15.60955 -15.32316 -15.00481 -14.70786 -14.38102 -14.10206 -13.85463 -13.69343 -13.47030 -13.43405 -13.17838 -13.09431 -12.97483 -12.91326 -12.67067 -12.60293 -12.40443 -12.31394 -12.13429 -12.03828 -11.70026 -11.42586 -11.28521 -10.52048 -10.47162 -9.74461 -9.55477 -9.47608 -8.12267 -6.20672 -0.37002 -0.11733 0.31435 1.10178 1.36887 1.39505 1.47176 1.65038 2.20585 2.43154 2.83155 2.93122 3.19037 3.31034 3.49733 3.76640 3.83510 3.96268 4.07144 4.18048 4.31880 4.39367 4.43807 4.56581 4.63106 4.82206 4.97367 4.98927 5.15891 5.16070 5.21785 5.22839 5.27052 5.33231 5.48937 5.64032 5.76072 5.79752 5.87814 6.07661 6.20026 6.21075 6.89912 6.93418 7.46227 8.95812 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.007116 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.944734 B = 3933.664471 C = 4750.295123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 C -0.152 4.152 4 N -0.980 5.980 5 C 0.261 3.739 6 C -0.519 4.519 7 H 0.063 0.937 8 C 0.016 3.984 9 N -0.926 5.926 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.276 1.276 14 S 2.724 3.276 15 O -0.988 6.988 16 O -0.996 6.996 17 C -0.759 4.759 18 C 0.213 3.787 19 N -0.560 5.560 20 H 0.438 0.562 21 C 0.255 3.745 22 N -0.512 5.512 23 C 0.127 3.873 24 C -0.175 4.175 25 C -0.057 4.057 26 C -0.100 4.100 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.032 0.968 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.220 0.780 38 H 0.202 0.798 39 H 0.182 0.818 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.974 -0.409 -13.100 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 C -0.211 4.211 4 N -0.819 5.819 5 C 0.137 3.863 6 C -0.558 4.558 7 H 0.082 0.918 8 C -0.183 4.183 9 N -0.566 5.566 10 Si 0.772 3.228 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.201 1.201 14 S 2.816 3.184 15 O -0.979 6.979 16 O -0.987 6.987 17 C -0.856 4.856 18 C 0.077 3.923 19 N -0.166 5.166 20 H 0.279 0.721 21 C 0.024 3.976 22 N -0.225 5.225 23 C -0.038 4.038 24 C -0.196 4.196 25 C -0.083 4.083 26 C -0.107 4.107 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.236 0.764 38 H 0.218 0.782 39 H 0.199 0.801 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.614 -1.153 -12.593 15.301 hybrid contribution 0.492 0.979 1.078 1.537 sum 9.106 -0.173 -11.515 14.681 Atomic orbital electron populations 1.22096 0.94299 1.02027 1.02961 1.20992 0.95580 0.94138 0.85887 1.22164 1.00738 0.95593 1.02577 1.57327 1.63858 1.47307 1.13379 1.18745 0.96362 0.93937 0.77216 1.21773 1.13351 1.19306 1.01408 0.91836 1.25588 0.96942 0.99108 0.96680 1.70036 1.32866 1.43483 1.10242 0.85767 0.79593 0.80295 0.77182 1.20055 1.21174 1.20142 1.00454 0.73046 0.72938 0.71997 1.93474 1.84954 1.77095 1.42350 1.93485 1.86682 1.70636 1.47857 1.31867 1.23876 1.23334 1.06484 1.22259 0.82419 0.91029 0.96618 1.41813 1.12926 1.43154 1.18673 0.72091 1.18663 0.91274 0.97812 0.89896 1.66563 1.37718 1.11033 1.07192 1.23242 0.95677 0.94777 0.90056 1.22329 0.93886 1.00713 1.02623 1.21435 1.01348 0.94101 0.91423 1.19238 0.94124 1.01006 0.96337 0.93153 0.88978 0.92958 0.88606 0.93453 0.89959 0.92696 0.94980 0.95978 0.92775 0.76352 0.78162 0.80116 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.16 71.98 0.66 -4.01 16 2 C 0.14 4.64 3.02 44.99 0.14 4.78 16 3 C -0.15 -4.84 8.04 71.98 0.58 -4.26 16 4 N -0.98 -39.76 2.73 -497.41 -1.36 -41.12 16 5 C 0.26 12.73 5.01 85.63 0.43 13.16 16 6 C -0.52 -26.54 7.53 25.60 0.19 -26.34 16 7 H 0.06 3.21 7.07 -2.91 -0.02 3.19 16 8 C 0.02 0.85 5.46 84.65 0.46 1.31 16 9 N -0.93 -52.67 13.29 21.44 0.28 -52.38 16 10 Si 0.94 42.74 29.54 68.60 2.03 44.76 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 14 S 2.72 109.26 5.86 -56.49 -0.33 108.93 16 15 O -0.99 -40.09 16.58 -128.00 -2.12 -42.21 16 16 O -1.00 -45.23 16.31 -128.00 -2.09 -47.32 16 17 C -0.76 -27.36 6.38 23.48 0.15 -27.21 16 18 C 0.21 6.52 11.47 82.98 0.95 7.47 16 19 N -0.56 -15.42 6.05 -192.34 -1.16 -16.59 16 20 H 0.44 8.75 8.96 -92.71 -0.83 7.92 16 21 C 0.26 8.12 8.43 133.93 1.13 9.25 16 22 N -0.51 -14.66 10.39 -192.74 -2.00 -16.66 16 23 C 0.13 2.75 11.15 84.83 0.95 3.70 16 24 C -0.18 -3.65 10.10 22.36 0.23 -3.42 16 25 C -0.06 -1.60 8.87 22.61 0.20 -1.40 16 26 C -0.10 -3.38 6.38 -20.18 -0.13 -3.51 16 27 H 0.05 1.70 6.69 -2.39 -0.02 1.68 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 2.87 5.60 -2.39 -0.01 2.86 16 31 H 0.05 1.55 6.49 -2.39 -0.02 1.54 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 2.09 6.65 -2.39 -0.02 2.07 16 34 H 0.03 1.64 6.45 -2.39 -0.02 1.62 16 35 H 0.02 1.21 6.91 -2.39 -0.02 1.20 16 36 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 37 H 0.22 5.44 8.06 -2.91 -0.02 5.41 16 38 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.14 3.76 6.30 -2.91 -0.02 3.74 16 Total: -1.00 -72.73 341.10 -0.56 -73.29 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.26 Total: 19.78 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.93 Total: -30.48 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -4.24 Total: -126.75 kcal Atomic # 8 Polarization: -85.32 SS G_CDS: -4.21 Total: -89.53 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 109.26 SS G_CDS: -0.33 Total: 108.93 kcal Total: -72.73 -0.56 -73.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523572078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.286 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds