Wall clock time and date at job start Tue Mar 31 2020 14:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 H 1.08998 * 109.47071 * 304.99746 * 3 2 1 5 5 C 1.50703 * 109.46765 * 185.00370 * 3 2 1 6 6 H 1.08007 * 119.99729 * 240.00391 * 5 3 2 7 7 C 1.37877 * 120.00618 * 59.99943 * 5 3 2 8 8 N 1.31515 * 119.99575 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00394 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47014 * 59.99786 * 9 7 5 11 11 H 1.48495 * 109.47066 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46944 * 300.00049 * 9 7 5 13 13 N 1.46496 * 109.47354 * 65.00525 * 3 2 1 14 14 C 1.34784 * 119.99590 * 274.99975 * 13 3 2 15 15 O 1.21362 * 120.00052 * 359.97438 * 14 13 3 16 16 C 1.49324 * 119.99667 * 179.97438 * 14 13 3 17 17 O 1.21395 * 120.00098 * 359.97438 * 16 14 13 18 18 N 1.34770 * 119.99544 * 179.97438 * 16 14 13 19 19 C 1.39927 * 119.99746 * 175.32562 * 18 16 14 20 20 C 1.39506 * 120.40658 * 34.97346 * 19 18 16 21 21 C 1.38187 * 118.45604 * 180.02562 * 20 19 18 22 22 C 1.39215 * 119.16649 * 359.97438 * 21 20 19 23 23 S 1.76200 * 119.62528 * 179.97438 * 22 21 20 24 24 C 1.81405 * 102.99862 * 180.02562 * 23 22 21 25 25 N 1.32426 * 120.74311 * 0.02562 * 22 21 20 26 26 C 1.31937 * 121.68959 * 359.65506 * 25 22 21 27 27 H 1.08998 * 109.46840 * 300.00115 * 1 2 3 28 28 H 1.08999 * 109.46703 * 59.99508 * 1 2 3 29 29 H 1.08995 * 109.47367 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46840 * 239.99885 * 2 1 3 31 31 H 1.08999 * 109.46703 * 120.00492 * 2 1 3 32 32 H 0.96992 * 120.00151 * 179.97438 * 8 7 5 33 33 H 0.96996 * 120.00262 * 94.99004 * 13 3 2 34 34 H 0.96999 * 120.00401 * 355.32121 * 18 16 14 35 35 H 1.08004 * 120.77345 * 359.97438 * 20 19 18 36 36 H 1.07992 * 120.41858 * 179.97438 * 21 20 19 37 37 H 1.09008 * 109.46562 * 300.00096 * 24 23 22 38 38 H 1.08991 * 109.47263 * 59.99825 * 24 23 22 39 39 H 1.08991 * 109.47074 * 180.02562 * 24 23 22 40 40 H 1.07997 * 119.62193 * 180.33082 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6523 7 6 4.1434 0.8782 -1.2280 8 7 3.4062 0.3365 -2.1729 9 14 6.0050 0.8797 -1.3813 10 1 6.5966 0.1449 -0.2344 11 1 6.3978 0.2165 -2.6505 12 1 6.5006 2.2797 -1.3809 13 7 1.6527 2.0974 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3397 2.6327 0.4335 16 6 0.0402 3.3315 2.6431 17 8 0.8152 3.3628 3.5770 18 7 -1.1769 3.8989 2.7581 19 6 -1.5847 4.4375 3.9835 20 6 -0.6610 5.0591 4.8240 21 6 -1.1076 5.5766 6.0250 22 6 -2.4554 5.4617 6.3539 23 16 -3.0378 6.1167 7.8824 24 6 -4.8090 5.7263 7.8452 25 7 -3.3045 4.8650 5.5313 26 6 -2.9136 4.3654 4.3745 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0613 -2.9498 33 1 2.2721 2.1230 1.9978 34 1 -1.7701 3.9339 1.9915 35 1 0.3792 5.1334 4.5430 36 1 -0.4197 6.0639 6.6999 37 1 -5.2687 6.2065 6.9813 38 1 -4.9417 4.6468 7.7742 39 1 -5.2808 6.0915 8.7573 40 1 -3.6356 3.8903 3.7269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527129733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:39 Heat of formation + Delta-G solvation = -54.459682 kcal Electronic energy + Delta-G solvation = -24197.915739 eV Core-core repulsion = 20524.246373 eV Total energy + Delta-G solvation = -3673.669366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.26725 -40.98849 -39.65847 -37.25898 -36.34840 -34.32874 -33.39751 -32.82401 -31.42356 -29.70946 -29.18036 -26.63891 -25.18184 -24.81616 -23.79114 -21.92786 -21.24577 -20.26175 -19.17589 -18.71386 -18.23557 -17.54626 -17.40050 -16.97096 -16.83840 -16.11011 -16.08563 -15.52630 -15.33674 -15.20721 -14.99483 -14.61857 -14.54201 -14.23305 -13.89513 -13.77132 -13.50329 -13.21178 -13.16724 -12.98476 -12.71052 -12.64100 -12.30555 -12.17621 -12.11611 -11.60436 -11.53071 -11.12260 -11.06542 -10.92468 -10.58163 -10.48032 -10.15211 -9.84822 -8.46019 -8.18643 -6.35562 -0.38401 0.10315 0.42121 0.44817 1.22846 1.33758 1.46678 1.46940 1.55074 2.10941 2.38824 2.55450 2.68744 3.11272 3.41487 3.51372 3.73116 3.87673 3.94621 4.35636 4.38446 4.48720 4.51604 4.55039 4.61930 4.71221 4.87950 4.95480 4.99227 5.01949 5.21965 5.34945 5.38829 5.45283 5.55971 5.66444 5.77979 5.90878 6.11408 6.46990 6.55546 6.66498 6.75724 7.09190 7.36260 8.86182 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.002332 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.847513 B =12003.456698 C =12654.174185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.017 0.983 5 C -0.554 4.554 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.670 5.670 14 C 0.497 3.503 15 O -0.543 6.543 16 C 0.519 3.481 17 O -0.518 6.518 18 N -0.627 5.627 19 C 0.078 3.922 20 C -0.070 4.070 21 C -0.131 4.131 22 C 0.090 3.910 23 S -0.081 6.081 24 C -0.125 4.125 25 N -0.481 5.481 26 C 0.104 3.896 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.409 0.591 34 H 0.435 0.565 35 H 0.148 0.852 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 9.802 16.943 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.592 4.592 6 H 0.087 0.913 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.320 5.320 14 C 0.277 3.723 15 O -0.422 6.422 16 C 0.301 3.699 17 O -0.393 6.393 18 N -0.275 5.275 19 C -0.021 4.021 20 C -0.099 4.099 21 C -0.157 4.157 22 C -0.159 4.159 23 S 0.157 5.843 24 C -0.294 4.294 25 N -0.193 5.193 26 C -0.059 4.059 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.275 0.725 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.145 0.855 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.030 10.175 17.901 24.916 hybrid contribution 1.248 -0.763 -1.840 2.351 sum -12.781 9.412 16.061 22.581 Atomic orbital electron populations 1.21709 0.96485 0.99695 1.00470 1.21829 0.94221 0.98594 1.01678 1.18634 0.94045 0.89561 0.80317 0.96561 1.21491 0.91265 1.39571 1.06886 0.91347 1.25670 1.03093 0.94215 0.94948 1.69996 1.37041 1.37891 1.09746 0.85465 0.79323 0.78438 0.77541 1.19264 1.20960 1.19754 1.46238 1.14334 1.53028 1.18361 1.19907 0.83715 0.80947 0.87781 1.90745 1.51407 1.59792 1.40306 1.20365 0.82513 0.78847 0.88207 1.90734 1.50903 1.57627 1.40062 1.42938 1.17037 1.55201 1.12355 1.18863 0.95507 0.99319 0.88401 1.21757 1.01024 0.93367 0.93734 1.21776 0.94983 1.01441 0.97529 1.23344 0.93251 0.99795 0.99477 1.85510 1.10657 1.71637 1.16478 1.23531 0.92249 1.06132 1.07445 1.68076 1.36405 1.11002 1.03860 1.22923 0.93076 0.96815 0.93084 0.94036 0.94444 0.93310 0.90319 0.94241 0.92377 0.75591 0.72495 0.83397 0.82172 0.89485 0.89729 0.85536 0.79366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.21 8.52 71.98 0.61 -4.59 16 2 C -0.12 -5.81 5.45 30.59 0.17 -5.64 16 3 C 0.28 13.49 2.24 44.25 0.10 13.58 16 4 H 0.02 0.93 7.58 -2.39 -0.02 0.91 16 5 C -0.55 -28.52 8.73 25.60 0.22 -28.30 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -49.75 11.29 21.45 0.24 -49.50 16 9 Si 0.97 41.19 29.54 68.60 2.03 43.21 16 10 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 N -0.67 -27.24 5.01 -447.56 -2.24 -29.49 16 14 C 0.50 18.34 6.45 87.23 0.56 18.90 16 15 O -0.54 -21.86 13.62 -3.29 -0.04 -21.90 16 16 C 0.52 15.87 7.74 87.23 0.68 16.55 16 17 O -0.52 -17.13 13.95 -3.39 -0.05 -17.18 16 18 N -0.63 -14.96 5.34 -304.43 -1.62 -16.58 16 19 C 0.08 1.77 6.32 38.27 0.24 2.01 16 20 C -0.07 -1.63 8.80 22.56 0.20 -1.44 16 21 C -0.13 -2.70 9.83 22.49 0.22 -2.48 16 22 C 0.09 1.87 7.00 84.84 0.59 2.47 16 23 S -0.08 -1.33 22.55 -56.49 -1.27 -2.60 16 24 C -0.12 -1.44 10.01 113.37 1.14 -0.31 16 25 N -0.48 -10.18 9.41 -191.71 -1.80 -11.99 16 26 C 0.10 2.03 11.11 84.79 0.94 2.98 16 27 H 0.04 1.63 5.65 -2.39 -0.01 1.61 16 28 H 0.04 1.63 7.85 -2.39 -0.02 1.61 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 4.11 5.95 -2.39 -0.01 4.10 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.41 15.49 8.01 -92.71 -0.74 14.74 16 34 H 0.43 8.79 8.30 -92.71 -0.77 8.02 16 35 H 0.15 3.73 6.31 -2.91 -0.02 3.71 16 36 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.13 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -61.16 352.03 0.94 -60.22 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.41 Total: 30.50 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 6.12 Total: 15.31 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -5.43 Total: -107.56 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.09 Total: -39.08 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -1.27 Total: -2.60 kcal Total: -61.16 0.94 -60.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527129733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.763 kcal (2) G-P(sol) polarization free energy of solvation -61.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds