Wall clock time and date at job start Tue Mar 31 2020 14:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 H 1.08997 * 109.47524 * 54.99546 * 3 2 1 5 5 C 1.50704 * 109.46956 * 174.99623 * 3 2 1 6 6 H 1.07997 * 119.99663 * 120.00114 * 5 3 2 7 7 C 1.37875 * 119.99929 * 299.99525 * 5 3 2 8 8 N 1.31510 * 119.99863 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99897 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46998 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47223 * 119.99924 * 9 7 5 12 12 H 1.48500 * 109.47247 * 240.00311 * 9 7 5 13 13 N 1.46506 * 109.47064 * 294.99653 * 3 2 1 14 14 C 1.34770 * 120.00064 * 84.99951 * 13 3 2 15 15 O 1.21361 * 120.00035 * 0.02562 * 14 13 3 16 16 C 1.49318 * 120.00148 * 179.97438 * 14 13 3 17 17 O 1.21397 * 119.99897 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00525 * 179.97438 * 16 14 13 19 19 C 1.39922 * 120.00580 * 185.26787 * 18 16 14 20 20 C 1.39518 * 120.40211 * 32.73336 * 19 18 16 21 21 C 1.38183 * 118.45097 * 180.02562 * 20 19 18 22 22 C 1.39214 * 119.16961 * 0.02562 * 21 20 19 23 23 S 1.76205 * 119.62496 * 179.97438 * 22 21 20 24 24 C 1.81394 * 102.99666 * 180.02562 * 23 22 21 25 25 N 1.32424 * 120.74333 * 359.97327 * 22 21 20 26 26 C 1.31927 * 121.69120 * 0.04688 * 25 22 21 27 27 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47623 * 300.00408 * 1 2 3 29 29 H 1.08999 * 109.46928 * 60.00375 * 1 2 3 30 30 H 1.08994 * 109.47623 * 239.99592 * 2 1 3 31 31 H 1.08999 * 109.46928 * 119.99625 * 2 1 3 32 32 H 0.97005 * 119.99706 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99581 * 264.99969 * 13 3 2 34 34 H 0.97003 * 119.99703 * 5.27434 * 18 16 14 35 35 H 1.08003 * 120.77231 * 0.02562 * 20 19 18 36 36 H 1.07993 * 120.41699 * 179.73021 * 21 20 19 37 37 H 1.09007 * 109.47194 * 179.97438 * 24 23 22 38 38 H 1.09002 * 109.47206 * 299.99613 * 24 23 22 39 39 H 1.09004 * 109.47563 * 59.99969 * 24 23 22 40 40 H 1.07999 * 119.62359 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8785 1.2282 8 7 3.4060 0.3368 2.1730 9 14 6.0048 0.8813 1.3821 10 1 6.5987 1.5473 0.1950 11 1 6.3988 1.6169 2.6104 12 1 6.4970 -0.5174 1.4634 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3398 2.6326 -0.4337 16 6 0.0404 3.3323 -2.6429 17 8 0.8158 3.3644 -3.5764 18 7 -1.1770 3.8987 -2.7584 19 6 -1.5893 4.4271 -3.9866 20 6 -1.1665 3.8463 -5.1827 21 6 -1.5976 4.4013 -6.3725 22 6 -2.4333 5.5142 -6.3386 23 16 -2.9897 6.2319 -7.8486 24 6 -4.0211 7.6145 -7.2875 25 7 -2.8148 6.0394 -5.1844 26 6 -2.4221 5.5355 -4.0301 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8291 -0.0610 2.9500 33 1 2.2721 2.1231 -1.9978 34 1 -1.7675 3.9402 -1.9899 35 1 -0.5174 2.9831 -5.1787 36 1 -1.2863 3.9799 -7.3168 37 1 -4.4255 8.1406 -8.1523 38 1 -4.8404 7.2328 -6.6782 39 1 -3.4169 8.3014 -6.6947 40 1 -2.7532 5.9909 -3.1085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527129734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:43 Heat of formation + Delta-G solvation = -36.044312 kcal Electronic energy + Delta-G solvation = -24194.417683 eV Core-core repulsion = 20521.546867 eV Total energy + Delta-G solvation = -3672.870816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13401 -39.81306 -38.29003 -35.73012 -35.02520 -32.53122 -32.49275 -31.07153 -30.47445 -29.12747 -27.36926 -25.32942 -24.12376 -23.37492 -22.49826 -20.45202 -19.59267 -18.91332 -18.34357 -17.53079 -16.81681 -16.30497 -15.90267 -15.58251 -15.36111 -15.08027 -14.65866 -14.48806 -14.31977 -14.04252 -13.75228 -13.56658 -13.44080 -13.02460 -12.80729 -12.44128 -12.18887 -11.68810 -11.46536 -11.35165 -11.33195 -11.03724 -10.93149 -10.84074 -10.42426 -10.32635 -10.08881 -10.04145 -9.76389 -9.27500 -9.19191 -9.10384 -8.62790 -8.12408 -7.67241 -6.22818 -4.32670 0.56632 0.96838 1.19082 1.71836 1.96230 2.49757 3.19326 3.27840 3.31131 3.34871 3.61512 3.91213 4.24742 4.29218 4.59015 4.70976 4.78779 4.86370 4.90279 5.01872 5.09757 5.30903 5.48307 5.53072 5.75647 5.90640 6.25184 6.29531 6.38038 6.48507 6.83800 6.88495 7.02888 7.06840 7.20284 7.39858 7.41088 7.56999 7.68871 7.76726 8.01949 8.34338 8.53659 8.78572 9.34469 10.82571 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.002308 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.607345 B =12126.580587 C =12535.715709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.665 5.665 14 C 0.495 3.505 15 O -0.527 6.527 16 C 0.508 3.492 17 O -0.504 6.504 18 N -0.646 5.646 19 C 0.100 3.900 20 C -0.063 4.063 21 C -0.125 4.125 22 C 0.098 3.902 23 S -0.083 6.083 24 C -0.129 4.129 25 N -0.470 5.470 26 C 0.094 3.906 27 H 0.027 0.973 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.104 0.896 32 H 0.265 0.735 33 H 0.402 0.598 34 H 0.426 0.574 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.002 9.118 -15.325 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.314 5.314 14 C 0.273 3.727 15 O -0.406 6.406 16 C 0.291 3.709 17 O -0.377 6.377 18 N -0.294 5.294 19 C 0.000 4.000 20 C -0.092 4.092 21 C -0.151 4.151 22 C -0.151 4.151 23 S 0.155 5.845 24 C -0.298 4.298 25 N -0.183 5.183 26 C -0.069 4.069 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.265 0.735 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.295 9.451 -16.256 23.029 hybrid contribution 1.277 -0.362 1.527 2.024 sum -12.018 9.089 -14.728 21.070 Atomic orbital electron populations 1.21857 0.98287 0.98484 1.00995 1.21970 0.92650 0.99345 1.02857 1.19050 0.94883 0.89418 0.79984 0.92673 1.21233 0.90243 1.39459 1.06616 0.91693 1.24874 0.98891 0.94562 0.95233 1.69888 1.35223 1.37398 1.09331 0.86350 0.84450 0.77871 0.78226 1.19618 1.20807 1.20772 1.46487 1.13240 1.52392 1.19295 1.19495 0.84634 0.81656 0.86895 1.90756 1.51085 1.59530 1.39208 1.21129 0.81218 0.78600 0.89960 1.90748 1.50399 1.55987 1.40582 1.43213 1.17507 1.57221 1.11480 1.18771 0.99466 0.95344 0.86388 1.21594 0.97919 0.99471 0.90200 1.21562 0.98082 0.96114 0.99373 1.22932 0.98887 0.96854 0.96459 1.85486 1.59498 1.34613 1.04873 1.23438 1.02218 0.98700 1.05453 1.67968 1.23210 1.29921 0.97151 1.22522 0.96497 0.91497 0.96399 0.95416 0.92902 0.94689 0.94619 0.87771 0.92448 0.76346 0.73516 0.82896 0.83833 0.88001 0.89463 0.89456 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.16 0.32 -2.55 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.37 2.24 -69.08 -0.15 6.21 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.68 8.73 -34.44 -0.30 -13.98 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.65 11.29 55.43 0.63 -23.02 16 9 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 13 N -0.67 -13.39 5.01 -55.41 -0.28 -13.67 16 14 C 0.49 9.14 6.45 -11.65 -0.08 9.07 16 15 O -0.53 -10.57 13.62 5.49 0.07 -10.49 16 16 C 0.51 7.94 7.65 -11.65 -0.09 7.85 16 17 O -0.50 -8.52 14.16 5.46 0.08 -8.44 16 18 N -0.65 -8.09 5.34 -10.17 -0.05 -8.14 16 19 C 0.10 1.20 6.31 -83.51 -0.53 0.67 16 20 C -0.06 -0.76 8.76 -39.12 -0.34 -1.10 16 21 C -0.13 -1.37 9.83 -39.24 -0.39 -1.75 16 22 C 0.10 1.10 7.00 -16.93 -0.12 0.98 16 23 S -0.08 -0.76 22.55 -107.50 -2.42 -3.18 16 24 C -0.13 -0.90 10.01 101.05 1.01 0.11 16 25 N -0.47 -5.42 9.41 -11.95 -0.11 -5.54 16 26 C 0.09 1.01 11.11 -17.34 -0.19 0.82 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 29 H 0.03 0.69 5.65 -51.93 -0.29 0.40 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 32 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.40 7.60 8.01 -40.82 -0.33 7.27 16 34 H 0.43 4.59 8.30 -40.82 -0.34 4.25 16 35 H 0.15 1.94 6.47 -52.48 -0.34 1.60 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -28.70 352.26 -7.81 -36.51 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -4.91 Total: 10.70 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.10 Total: 4.89 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.18 Total: -50.37 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.15 Total: -18.94 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.42 Total: -3.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.70 -7.81 -36.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527129734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.466 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds