Wall clock time and date at job start Tue Mar 31 2020 14:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47002 * 2 1 4 4 H 1.08997 * 109.47524 * 54.99546 * 3 2 1 5 5 C 1.50704 * 109.46956 * 174.99623 * 3 2 1 6 6 H 1.07997 * 119.99663 * 120.00114 * 5 3 2 7 7 C 1.37875 * 119.99929 * 299.99525 * 5 3 2 8 8 N 1.31510 * 119.99863 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99897 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46998 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47223 * 119.99924 * 9 7 5 12 12 H 1.48500 * 109.47247 * 240.00311 * 9 7 5 13 13 N 1.46506 * 109.47064 * 294.99653 * 3 2 1 14 14 C 1.34770 * 120.00064 * 84.99951 * 13 3 2 15 15 O 1.21361 * 120.00035 * 0.02562 * 14 13 3 16 16 C 1.49318 * 120.00148 * 179.97438 * 14 13 3 17 17 O 1.21397 * 119.99897 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00525 * 179.97438 * 16 14 13 19 19 C 1.39922 * 120.00580 * 185.26787 * 18 16 14 20 20 C 1.39518 * 120.40211 * 32.73336 * 19 18 16 21 21 C 1.38183 * 118.45097 * 180.02562 * 20 19 18 22 22 C 1.39214 * 119.16961 * 0.02562 * 21 20 19 23 23 S 1.76205 * 119.62496 * 179.97438 * 22 21 20 24 24 C 1.81394 * 102.99666 * 180.02562 * 23 22 21 25 25 N 1.32424 * 120.74333 * 359.97327 * 22 21 20 26 26 C 1.31927 * 121.69120 * 0.04688 * 25 22 21 27 27 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47623 * 300.00408 * 1 2 3 29 29 H 1.08999 * 109.46928 * 60.00375 * 1 2 3 30 30 H 1.08994 * 109.47623 * 239.99592 * 2 1 3 31 31 H 1.08999 * 109.46928 * 119.99625 * 2 1 3 32 32 H 0.97005 * 119.99706 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99581 * 264.99969 * 13 3 2 34 34 H 0.97003 * 119.99703 * 5.27434 * 18 16 14 35 35 H 1.08003 * 120.77231 * 0.02562 * 20 19 18 36 36 H 1.07993 * 120.41699 * 179.73021 * 21 20 19 37 37 H 1.09007 * 109.47194 * 179.97438 * 24 23 22 38 38 H 1.09002 * 109.47206 * 299.99613 * 24 23 22 39 39 H 1.09004 * 109.47563 * 59.99969 * 24 23 22 40 40 H 1.07999 * 119.62359 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8785 1.2282 8 7 3.4060 0.3368 2.1730 9 14 6.0048 0.8813 1.3821 10 1 6.5987 1.5473 0.1950 11 1 6.3988 1.6169 2.6104 12 1 6.4970 -0.5174 1.4634 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3398 2.6326 -0.4337 16 6 0.0404 3.3323 -2.6429 17 8 0.8158 3.3644 -3.5764 18 7 -1.1770 3.8987 -2.7584 19 6 -1.5893 4.4271 -3.9866 20 6 -1.1665 3.8463 -5.1827 21 6 -1.5976 4.4013 -6.3725 22 6 -2.4333 5.5142 -6.3386 23 16 -2.9897 6.2319 -7.8486 24 6 -4.0211 7.6145 -7.2875 25 7 -2.8148 6.0394 -5.1844 26 6 -2.4221 5.5355 -4.0301 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8291 -0.0610 2.9500 33 1 2.2721 2.1231 -1.9978 34 1 -1.7675 3.9402 -1.9899 35 1 -0.5174 2.9831 -5.1787 36 1 -1.2863 3.9799 -7.3168 37 1 -4.4255 8.1406 -8.1523 38 1 -4.8404 7.2328 -6.6782 39 1 -3.4169 8.3014 -6.6947 40 1 -2.7532 5.9909 -3.1085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527129734.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:42 Heat of formation + Delta-G solvation = -55.046222 kcal Electronic energy + Delta-G solvation = -24195.241667 eV Core-core repulsion = 20521.546867 eV Total energy + Delta-G solvation = -3673.694800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.27284 -40.99197 -39.66162 -37.26273 -36.35649 -34.33358 -33.40179 -32.82570 -31.42350 -29.70743 -29.18589 -26.65402 -25.18844 -24.82338 -23.79263 -21.92166 -21.24477 -20.26423 -19.18288 -18.71925 -18.24829 -17.60894 -17.34830 -17.05980 -16.72770 -16.14347 -15.96464 -15.64122 -15.32643 -15.20383 -14.99396 -14.62755 -14.54806 -14.23126 -13.87990 -13.78419 -13.51003 -13.22040 -13.17008 -12.95710 -12.75154 -12.67718 -12.35127 -12.16034 -12.11269 -11.60662 -11.53045 -11.10406 -11.05458 -10.92811 -10.60397 -10.51317 -10.12390 -9.85156 -8.45235 -8.19419 -6.36055 -0.39649 0.09543 0.44012 0.44782 1.21996 1.33766 1.43613 1.46620 1.57362 2.10292 2.38378 2.56603 2.67889 3.10748 3.41177 3.50971 3.71840 3.86588 3.92982 4.35663 4.38398 4.48769 4.50783 4.55017 4.61434 4.71228 4.85768 4.95219 4.98539 5.01822 5.21846 5.34701 5.38769 5.43827 5.56125 5.66361 5.77893 5.90559 6.11352 6.46506 6.55553 6.66551 6.75301 7.08933 7.35903 8.85814 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.002308 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.607345 B =12126.580587 C =12535.715709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.278 1.278 13 N -0.670 5.670 14 C 0.497 3.503 15 O -0.543 6.543 16 C 0.519 3.481 17 O -0.518 6.518 18 N -0.627 5.627 19 C 0.081 3.919 20 C -0.071 4.071 21 C -0.129 4.129 22 C 0.089 3.911 23 S -0.081 6.081 24 C -0.125 4.125 25 N -0.480 5.480 26 C 0.102 3.898 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.267 0.733 33 H 0.409 0.591 34 H 0.435 0.565 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.597 10.081 -16.885 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.590 4.590 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.319 5.319 14 C 0.276 3.724 15 O -0.423 6.423 16 C 0.301 3.699 17 O -0.393 6.393 18 N -0.276 5.276 19 C -0.018 4.018 20 C -0.100 4.100 21 C -0.155 4.155 22 C -0.160 4.160 23 S 0.157 5.843 24 C -0.294 4.294 25 N -0.192 5.192 26 C -0.061 4.061 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.275 0.725 35 H 0.163 0.837 36 H 0.179 0.821 37 H 0.145 0.855 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -13.934 10.441 -17.852 24.937 hybrid contribution 1.337 -0.567 1.929 2.414 sum -12.597 9.874 -15.923 22.577 Atomic orbital electron populations 1.21710 0.96492 0.99699 1.00467 1.21824 0.94200 0.98537 1.01727 1.18649 0.94055 0.89606 0.80310 0.96580 1.21544 0.91264 1.39376 1.06829 0.91396 1.25666 1.03069 0.94242 0.94965 1.70012 1.36882 1.38020 1.09779 0.85363 0.79379 0.77880 0.78126 1.18960 1.20806 1.20349 1.46240 1.14292 1.53046 1.18371 1.19900 0.83724 0.80927 0.87809 1.90746 1.51397 1.59849 1.40261 1.20364 0.82170 0.79043 0.88357 1.90753 1.51104 1.56951 1.40457 1.42975 1.16337 1.56004 1.12242 1.18859 1.00763 0.96396 0.85760 1.21639 0.97989 0.99485 0.90895 1.21754 0.97957 0.96097 0.99713 1.23335 0.98493 0.96879 0.97271 1.85505 1.59654 1.35359 1.03744 1.23533 1.01637 0.97727 1.06473 1.68063 1.23614 1.30172 0.97397 1.22904 0.95259 0.90676 0.97254 0.93294 0.94503 0.94008 0.94125 0.90339 0.92385 0.75590 0.72487 0.83706 0.82126 0.85537 0.89480 0.89740 0.79342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.52 71.98 0.61 -4.58 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.28 13.44 2.24 44.24 0.10 13.54 16 4 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 5 C -0.55 -28.44 8.73 25.60 0.22 -28.22 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 1.12 5.29 84.65 0.45 1.57 16 8 N -0.91 -49.71 11.29 21.45 0.24 -49.47 16 9 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.67 -27.22 5.01 -447.57 -2.24 -29.46 16 14 C 0.50 18.33 6.45 87.23 0.56 18.89 16 15 O -0.54 -21.86 13.62 -3.28 -0.04 -21.91 16 16 C 0.52 15.88 7.65 87.23 0.67 16.54 16 17 O -0.52 -17.20 14.16 -3.39 -0.05 -17.25 16 18 N -0.63 -14.98 5.34 -304.42 -1.63 -16.60 16 19 C 0.08 1.84 6.31 38.27 0.24 2.08 16 20 C -0.07 -1.66 8.76 22.57 0.20 -1.46 16 21 C -0.13 -2.65 9.83 22.49 0.22 -2.43 16 22 C 0.09 1.85 7.00 84.84 0.59 2.44 16 23 S -0.08 -1.33 22.55 -56.49 -1.27 -2.60 16 24 C -0.13 -1.44 10.01 113.37 1.13 -0.31 16 25 N -0.48 -10.16 9.41 -191.72 -1.80 -11.97 16 26 C 0.10 1.99 11.11 84.79 0.94 2.94 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.60 7.85 -2.39 -0.02 1.58 16 29 H 0.04 1.63 5.65 -2.39 -0.01 1.62 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.08 4.09 5.95 -2.39 -0.01 4.08 16 32 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 33 H 0.41 15.49 8.01 -92.71 -0.74 14.74 16 34 H 0.43 8.78 8.30 -92.71 -0.77 8.01 16 35 H 0.15 3.60 6.47 -2.91 -0.02 3.58 16 36 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -61.43 352.26 0.93 -60.50 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.41 Total: 30.04 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.11 Total: 15.41 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -5.43 Total: -107.50 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.09 Total: -39.16 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -1.27 Total: -2.60 kcal Total: -61.43 0.93 -60.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527129734.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.455 kcal (2) G-P(sol) polarization free energy of solvation -61.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds