Wall clock time and date at job start Tue Mar 31 2020 14:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47552 * 2 1 4 4 N 1.46497 * 109.47172 * 120.00461 * 2 1 3 5 5 C 1.46507 * 119.99804 * 304.91147 * 4 2 1 6 6 C 1.50698 * 109.47216 * 269.99797 * 5 4 2 7 7 H 1.08005 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00168 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99639 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00140 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47321 * 59.99871 * 10 8 6 12 12 H 1.48499 * 109.47420 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47280 * 299.99824 * 10 8 6 14 14 C 1.34774 * 120.00548 * 124.91277 * 4 2 1 15 15 O 1.21588 * 120.00480 * 185.63441 * 14 4 2 16 16 C 1.47541 * 119.99912 * 5.63216 * 14 4 2 17 17 C 1.39529 * 120.04256 * 54.37157 * 16 14 4 18 18 C 1.37888 * 120.17225 * 180.02562 * 17 16 14 19 19 Cl 1.73607 * 120.02786 * 179.83732 * 18 17 16 20 20 C 1.38739 * 119.94771 * 359.85084 * 18 17 16 21 21 C 1.37663 * 120.30674 * 359.97438 * 20 18 17 22 22 C 1.38863 * 120.88979 * 0.35508 * 21 20 18 23 23 O 1.36135 * 111.39381 * 179.09351 * 22 21 20 24 24 C 1.43770 * 109.13098 * 18.72504 * 23 22 21 25 25 C 1.51676 * 132.11463 * 180.35270 * 21 20 18 26 26 H 1.09006 * 109.47264 * 299.99840 * 1 2 3 27 27 H 1.09004 * 109.47026 * 59.99653 * 1 2 3 28 28 H 1.08997 * 109.47445 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47264 * 240.00160 * 2 1 3 30 30 H 1.09005 * 109.47054 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46928 * 300.00113 * 3 2 1 32 32 H 1.09007 * 109.46994 * 60.00278 * 3 2 1 33 33 H 1.09001 * 109.47085 * 30.00165 * 5 4 2 34 34 H 1.08998 * 109.46958 * 150.00200 * 5 4 2 35 35 H 0.96999 * 119.99711 * 179.97438 * 9 8 6 36 36 H 1.07998 * 119.91573 * 0.02802 * 17 16 14 37 37 H 1.07999 * 119.84792 * 180.02562 * 20 18 17 38 38 H 1.09000 * 110.74769 * 214.11438 * 24 23 22 39 39 H 1.08994 * 110.75773 * 90.93593 * 24 23 22 40 40 H 1.09002 * 110.94254 * 46.46597 * 25 21 20 41 41 H 1.09003 * 110.97518 * 282.78277 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 1.5778 -0.2560 2.5241 6 6 2.5252 0.7913 3.0497 7 1 3.3707 1.1025 2.4540 8 6 2.3128 1.3524 4.2911 9 7 1.2830 0.9739 5.0162 10 14 3.4868 2.6512 4.9424 11 1 3.4987 3.8149 4.0200 12 1 3.0412 3.0908 6.2890 13 1 4.8544 2.0799 5.0362 14 6 2.8727 -1.7259 1.0749 15 8 3.1979 -2.3640 2.0575 16 6 3.4134 -2.0850 -0.2500 17 6 4.0603 -1.1217 -1.0249 18 6 4.5662 -1.4542 -2.2638 19 17 5.3667 -0.2517 -3.2266 20 6 4.4346 -2.7505 -2.7405 21 6 3.8011 -3.7087 -1.9818 22 6 3.2769 -3.3983 -0.7339 23 8 2.6785 -4.4800 -0.1636 24 6 3.1497 -5.6745 -0.8102 25 6 3.5182 -5.1783 -2.2284 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 0.5742 0.1638 2.4547 34 1 1.5684 -1.1101 3.2013 35 1 1.1338 1.3683 5.8898 36 1 4.1652 -0.1131 -0.6534 37 1 4.8318 -3.0093 -3.7109 38 1 2.3609 -6.4253 -0.8565 39 1 4.0275 -6.0698 -0.2991 40 1 4.4061 -5.6888 -2.6014 41 1 2.6811 -5.3046 -2.9152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546614407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:17 Heat of formation + Delta-G solvation = -45.052841 kcal Electronic energy + Delta-G solvation = -25817.342529 eV Core-core repulsion = 22109.744617 eV Total energy + Delta-G solvation = -3707.597912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33950 -39.20016 -37.65445 -36.16543 -35.92060 -33.08896 -32.62070 -30.83783 -30.23118 -29.47843 -27.31221 -26.72097 -24.32383 -23.32323 -22.23745 -22.14928 -21.04050 -18.55706 -17.53493 -17.04884 -16.84418 -16.36975 -16.18072 -15.69405 -15.14140 -14.38668 -14.37093 -13.86273 -13.66503 -13.47994 -13.35577 -13.22566 -13.02535 -12.63732 -12.35341 -12.17146 -12.00406 -11.90987 -11.78655 -11.58151 -11.37369 -11.24072 -11.06261 -10.89400 -10.81366 -10.68991 -10.47896 -10.32496 -9.99730 -9.54254 -9.16394 -8.85894 -8.39079 -8.18862 -7.63620 -6.00978 -4.04666 0.87853 1.00650 1.99218 2.99566 3.28379 3.33674 3.38402 3.41526 3.61124 3.87518 4.12769 4.35681 4.47103 4.61651 4.77730 4.92801 4.97769 5.15656 5.24899 5.32348 5.33453 5.41918 5.49590 5.59174 5.62979 5.71713 5.79728 5.96831 6.03173 6.06321 6.20195 6.25877 6.32024 6.39544 6.63762 6.92752 6.96588 7.14937 7.50843 7.57885 7.95608 8.27099 8.42058 8.91017 9.07391 9.59243 11.07115 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.004538 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.331428 B = 6168.390479 C = 7116.372843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 C -0.160 4.160 4 N -0.583 5.583 5 C 0.245 3.755 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.553 3.447 15 O -0.526 6.526 16 C -0.119 4.119 17 C -0.045 4.045 18 C -0.069 4.069 19 Cl -0.065 7.065 20 C -0.050 4.050 21 C -0.173 4.173 22 C 0.154 3.846 23 O -0.285 6.285 24 C 0.048 3.952 25 C -0.105 4.105 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 -8.337 -19.721 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 C -0.218 4.218 4 N -0.314 5.314 5 C 0.126 3.874 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.338 3.662 15 O -0.403 6.403 16 C -0.123 4.123 17 C -0.064 4.064 18 C -0.096 4.096 19 Cl -0.036 7.036 20 C -0.069 4.069 21 C -0.174 4.174 22 C 0.107 3.893 23 O -0.197 6.197 24 C -0.027 4.027 25 C -0.142 4.142 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.168 0.832 37 H 0.154 0.846 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.041 -8.549 -18.877 20.944 hybrid contribution 0.827 0.836 0.178 1.189 sum 3.868 -7.713 -18.699 20.594 Atomic orbital electron populations 1.22129 0.95268 1.01897 1.02535 1.21085 0.94470 0.93917 0.88019 1.22220 1.00995 0.95887 1.02674 1.48271 1.43946 1.30169 1.09054 1.19317 0.95373 0.95832 0.76895 1.21395 1.11179 1.21395 1.02089 0.92360 1.24912 0.95499 0.97116 0.96491 1.69923 1.28369 1.43090 1.11938 0.86614 0.81431 0.81691 0.78023 1.20228 1.21253 1.20243 1.17824 0.80196 0.81166 0.86965 1.90783 1.59243 1.51779 1.38489 1.19415 1.04776 0.90965 0.97148 1.21074 0.94370 0.99688 0.91281 1.20430 1.04196 0.90655 0.94320 1.98364 1.78598 1.55756 1.70909 1.20114 0.97265 0.89906 0.99621 1.20589 1.04896 0.96862 0.95053 1.19517 0.91078 0.88335 0.90372 1.87012 1.60864 1.13242 1.58592 1.23914 1.01007 0.86962 0.90839 1.21800 1.03284 0.90885 0.98220 0.91011 0.92237 0.92898 0.90712 0.92951 0.93000 0.89776 0.94412 0.93823 0.92726 0.83219 0.84560 0.87292 0.90094 0.88686 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.07 37.15 0.34 -2.19 16 2 C 0.13 2.23 2.52 -67.94 -0.17 2.06 16 3 C -0.16 -2.65 8.46 37.16 0.31 -2.33 16 4 N -0.58 -12.73 2.39 -168.69 -0.40 -13.14 16 5 C 0.24 6.38 4.77 -5.19 -0.02 6.36 16 6 C -0.52 -14.46 7.85 -34.44 -0.27 -14.73 16 7 H 0.06 1.60 7.59 -52.48 -0.40 1.20 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 10 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 C 0.55 12.46 7.09 -12.47 -0.09 12.37 16 15 O -0.53 -14.17 16.63 5.29 0.09 -14.08 16 16 C -0.12 -2.12 4.60 -104.72 -0.48 -2.60 16 17 C -0.05 -0.68 7.47 -39.23 -0.29 -0.98 16 18 C -0.07 -0.87 6.32 -39.52 -0.25 -1.12 16 19 Cl -0.07 -0.73 28.96 -51.86 -1.50 -2.24 16 20 C -0.05 -0.56 9.81 -39.61 -0.39 -0.94 16 21 C -0.17 -2.07 6.27 -104.12 -0.65 -2.72 16 22 C 0.15 2.46 6.78 -38.45 -0.26 2.20 16 23 O -0.28 -4.57 11.07 -20.17 -0.22 -4.79 16 24 C 0.05 0.47 8.00 38.06 0.30 0.78 16 25 C -0.10 -0.87 7.12 -26.50 -0.19 -1.06 16 26 H 0.07 1.25 6.52 -51.93 -0.34 0.92 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.17 5.20 -51.93 -0.27 0.90 16 30 H 0.05 0.87 6.68 -51.93 -0.35 0.52 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.63 6.93 -51.93 -0.36 1.27 16 33 H 0.04 0.99 6.18 -51.93 -0.32 0.67 16 34 H 0.04 1.31 7.35 -51.93 -0.38 0.93 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.15 2.30 6.18 -52.49 -0.32 1.97 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -33.50 350.77 -8.51 -42.01 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.26 Total: -0.87 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.21 Total: -3.26 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.33 Total: -38.82 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.14 Total: -18.87 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.50 -8.51 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546614407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.043 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds