Wall clock time and date at job start Tue Mar 31 2020 14:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47552 * 2 1 4 4 N 1.46497 * 109.47172 * 120.00461 * 2 1 3 5 5 C 1.46507 * 119.99804 * 304.91147 * 4 2 1 6 6 C 1.50698 * 109.47216 * 269.99797 * 5 4 2 7 7 H 1.08005 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00168 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99639 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00140 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47321 * 59.99871 * 10 8 6 12 12 H 1.48499 * 109.47420 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47280 * 299.99824 * 10 8 6 14 14 C 1.34774 * 120.00548 * 124.91277 * 4 2 1 15 15 O 1.21588 * 120.00480 * 185.63441 * 14 4 2 16 16 C 1.47541 * 119.99912 * 5.63216 * 14 4 2 17 17 C 1.39529 * 120.04256 * 54.37157 * 16 14 4 18 18 C 1.37888 * 120.17225 * 180.02562 * 17 16 14 19 19 Cl 1.73607 * 120.02786 * 179.83732 * 18 17 16 20 20 C 1.38739 * 119.94771 * 359.85084 * 18 17 16 21 21 C 1.37663 * 120.30674 * 359.97438 * 20 18 17 22 22 C 1.38863 * 120.88979 * 0.35508 * 21 20 18 23 23 O 1.36135 * 111.39381 * 179.09351 * 22 21 20 24 24 C 1.43770 * 109.13098 * 18.72504 * 23 22 21 25 25 C 1.51676 * 132.11463 * 180.35270 * 21 20 18 26 26 H 1.09006 * 109.47264 * 299.99840 * 1 2 3 27 27 H 1.09004 * 109.47026 * 59.99653 * 1 2 3 28 28 H 1.08997 * 109.47445 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47264 * 240.00160 * 2 1 3 30 30 H 1.09005 * 109.47054 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46928 * 300.00113 * 3 2 1 32 32 H 1.09007 * 109.46994 * 60.00278 * 3 2 1 33 33 H 1.09001 * 109.47085 * 30.00165 * 5 4 2 34 34 H 1.08998 * 109.46958 * 150.00200 * 5 4 2 35 35 H 0.96999 * 119.99711 * 179.97438 * 9 8 6 36 36 H 1.07998 * 119.91573 * 0.02802 * 17 16 14 37 37 H 1.07999 * 119.84792 * 180.02562 * 20 18 17 38 38 H 1.09000 * 110.74769 * 214.11438 * 24 23 22 39 39 H 1.08994 * 110.75773 * 90.93593 * 24 23 22 40 40 H 1.09002 * 110.94254 * 46.46597 * 25 21 20 41 41 H 1.09003 * 110.97518 * 282.78277 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 1.5778 -0.2560 2.5241 6 6 2.5252 0.7913 3.0497 7 1 3.3707 1.1025 2.4540 8 6 2.3128 1.3524 4.2911 9 7 1.2830 0.9739 5.0162 10 14 3.4868 2.6512 4.9424 11 1 3.4987 3.8149 4.0200 12 1 3.0412 3.0908 6.2890 13 1 4.8544 2.0799 5.0362 14 6 2.8727 -1.7259 1.0749 15 8 3.1979 -2.3640 2.0575 16 6 3.4134 -2.0850 -0.2500 17 6 4.0603 -1.1217 -1.0249 18 6 4.5662 -1.4542 -2.2638 19 17 5.3667 -0.2517 -3.2266 20 6 4.4346 -2.7505 -2.7405 21 6 3.8011 -3.7087 -1.9818 22 6 3.2769 -3.3983 -0.7339 23 8 2.6785 -4.4800 -0.1636 24 6 3.1497 -5.6745 -0.8102 25 6 3.5182 -5.1783 -2.2284 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 0.5742 0.1638 2.4547 34 1 1.5684 -1.1101 3.2013 35 1 1.1338 1.3683 5.8898 36 1 4.1652 -0.1131 -0.6534 37 1 4.8318 -3.0093 -3.7109 38 1 2.3609 -6.4253 -0.8565 39 1 4.0275 -6.0698 -0.2991 40 1 4.4061 -5.6888 -2.6014 41 1 2.6811 -5.3046 -2.9152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546614407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:16 Heat of formation + Delta-G solvation = -66.156907 kcal Electronic energy + Delta-G solvation = -25818.257670 eV Core-core repulsion = 22109.744617 eV Total energy + Delta-G solvation = -3708.513053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.40346 -40.76810 -38.75291 -37.63386 -37.15904 -34.98331 -33.85107 -32.50505 -31.39491 -30.42751 -29.24769 -28.06835 -25.81471 -24.61965 -23.65668 -23.20240 -22.43116 -20.04334 -18.64614 -18.51675 -18.48709 -17.89219 -17.17550 -17.06449 -16.71342 -16.19341 -15.78819 -15.14642 -14.95734 -14.90798 -14.51337 -14.32832 -14.18938 -14.05127 -13.76117 -13.46736 -13.38362 -13.28582 -12.96303 -12.85856 -12.79061 -12.66903 -12.53162 -12.45256 -12.28748 -12.13308 -11.97195 -11.80280 -11.59440 -11.39645 -10.80261 -10.60958 -10.04996 -9.50958 -9.21259 -8.20000 -6.32528 -0.22505 -0.03723 1.00863 1.36257 1.40550 1.47350 1.68406 2.14297 2.23333 2.38097 2.46199 3.09659 3.27366 3.39466 3.67077 3.82746 3.92862 3.95237 4.15075 4.17544 4.24581 4.34501 4.41485 4.64010 4.75719 4.76692 4.80574 4.81778 4.90985 4.94247 4.97871 5.00391 5.06793 5.09225 5.20282 5.29014 5.37724 5.53814 5.61423 5.84110 5.94654 6.08529 6.65933 6.75299 7.23435 7.40244 8.87726 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013128 B = 0.004538 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.331428 B = 6168.390479 C = 7116.372843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 C -0.153 4.153 4 N -0.586 5.586 5 C 0.262 3.738 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.963 3.037 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.546 3.454 15 O -0.590 6.590 16 C -0.150 4.150 17 C -0.051 4.051 18 C -0.064 4.064 19 Cl -0.047 7.047 20 C -0.031 4.031 21 C -0.159 4.159 22 C 0.132 3.868 23 O -0.327 6.327 24 C 0.034 3.966 25 C -0.092 4.092 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.032 0.968 34 H -0.009 1.009 35 H 0.266 0.734 36 H 0.141 0.859 37 H 0.179 0.821 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -8.349 -23.880 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 C -0.211 4.211 4 N -0.315 5.315 5 C 0.141 3.859 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.787 3.213 11 H -0.182 1.182 12 H -0.205 1.205 13 H -0.205 1.205 14 C 0.334 3.666 15 O -0.472 6.472 16 C -0.154 4.154 17 C -0.070 4.070 18 C -0.091 4.091 19 Cl -0.018 7.018 20 C -0.050 4.050 21 C -0.160 4.160 22 C 0.085 3.915 23 O -0.241 6.241 24 C -0.040 4.040 25 C -0.129 4.129 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.009 0.991 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.196 0.804 38 H 0.152 0.848 39 H 0.102 0.898 40 H 0.147 0.853 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.328 -8.540 -23.097 25.003 hybrid contribution 0.415 0.748 1.384 1.627 sum 4.743 -7.792 -21.713 23.551 Atomic orbital electron populations 1.22102 0.94067 1.01881 1.03251 1.21436 0.95437 0.94201 0.86776 1.22147 1.00755 0.95170 1.02997 1.48297 1.43813 1.30531 1.08908 1.18763 0.95161 0.93338 0.78604 1.21598 1.11176 1.21523 1.02492 0.92524 1.25810 0.97167 0.99359 0.96694 1.70055 1.30111 1.44413 1.12343 0.85541 0.78602 0.79292 0.77841 1.18238 1.20499 1.20534 1.18658 0.79301 0.80134 0.88515 1.90717 1.61443 1.53824 1.41230 1.19044 1.07851 0.93065 0.95443 1.20916 0.95034 0.98774 0.92313 1.20472 1.03449 0.91821 0.93394 1.98376 1.78110 1.55324 1.70036 1.20550 0.95212 0.88565 1.00656 1.21035 1.02969 0.98987 0.92999 1.19796 0.91852 0.87696 0.92137 1.86969 1.61729 1.14994 1.60375 1.24336 1.02174 0.85597 0.91865 1.21932 1.05659 0.87987 0.97273 0.93479 0.88171 0.93319 0.88340 0.93332 0.88924 0.93006 0.95033 0.99099 0.92537 0.84154 0.80404 0.84769 0.89823 0.85253 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.07 71.98 0.65 -4.24 16 2 C 0.12 4.33 2.52 44.99 0.11 4.44 16 3 C -0.15 -5.01 8.46 71.98 0.61 -4.40 16 4 N -0.59 -27.24 2.39 -805.88 -1.92 -29.16 16 5 C 0.26 14.78 4.77 85.63 0.41 15.19 16 6 C -0.53 -30.88 7.85 25.60 0.20 -30.68 16 7 H 0.06 3.24 7.59 -2.91 -0.02 3.22 16 8 C 0.01 0.49 5.46 84.66 0.46 0.95 16 9 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 10 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 11 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 14 C 0.55 26.33 7.09 86.70 0.61 26.95 16 15 O -0.59 -34.71 16.63 -3.99 -0.07 -34.78 16 16 C -0.15 -5.49 4.60 -19.93 -0.09 -5.58 16 17 C -0.05 -1.52 7.47 22.50 0.17 -1.35 16 18 C -0.06 -1.45 6.32 22.31 0.14 -1.31 16 19 Cl -0.05 -0.92 28.96 -2.72 -0.08 -1.00 16 20 C -0.03 -0.56 9.81 22.25 0.22 -0.34 16 21 C -0.16 -3.30 6.27 -19.54 -0.12 -3.42 16 22 C 0.13 4.19 6.78 23.00 0.16 4.35 16 23 O -0.33 -10.69 11.07 -95.09 -1.05 -11.74 16 24 C 0.03 0.61 8.00 72.57 0.58 1.19 16 25 C -0.09 -1.12 7.12 30.74 0.22 -0.90 16 26 H 0.05 1.71 6.52 -2.38 -0.02 1.69 16 27 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 3.02 5.20 -2.38 -0.01 3.01 16 30 H 0.05 1.61 6.68 -2.38 -0.02 1.59 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 2.04 6.93 -2.38 -0.02 2.02 16 33 H 0.03 1.79 6.18 -2.39 -0.01 1.78 16 34 H -0.01 -0.60 7.35 -2.39 -0.02 -0.62 16 35 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.14 4.33 6.18 -2.91 -0.02 4.31 16 37 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -81.08 350.77 4.58 -76.50 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.06 Total: 8.66 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.33 Total: 0.84 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -1.64 Total: -86.21 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.12 Total: -46.52 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -81.08 4.58 -76.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546614407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.340 kcal (2) G-P(sol) polarization free energy of solvation -81.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds