Wall clock time and date at job start Tue Mar 31 2020 14:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00211 * 2 1 4 4 N 1.46504 * 109.46806 * 125.00057 * 3 2 1 5 5 C 1.46505 * 120.00149 * 270.00040 * 4 3 2 6 6 C 1.50702 * 109.46836 * 270.00364 * 5 4 3 7 7 H 1.07994 * 120.00445 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99368 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99702 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00160 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46983 * 89.99885 * 10 8 6 12 12 H 1.48502 * 109.46686 * 209.99557 * 10 8 6 13 13 H 1.48496 * 109.47191 * 329.99556 * 10 8 6 14 14 C 1.34777 * 119.99736 * 90.00444 * 4 3 2 15 15 O 1.21288 * 119.99593 * 179.97438 * 14 4 3 16 16 C 1.50697 * 120.00369 * 359.97438 * 14 4 3 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 4 18 18 O 1.42898 * 109.47319 * 180.02562 * 17 16 14 19 19 C 1.35900 * 117.00172 * 179.97438 * 18 17 16 20 20 C 1.38761 * 120.04606 * 359.72218 * 19 18 17 21 21 C 1.38131 * 119.96646 * 179.74009 * 20 19 18 22 22 C 1.38265 * 120.06854 * 0.56021 * 21 20 19 23 23 C 1.38370 * 120.09963 * 359.69479 * 22 21 20 24 24 Cl 1.73596 * 119.98693 * 180.02562 * 23 22 21 25 25 C 1.38278 * 120.02485 * 0.02562 * 23 22 21 26 26 H 1.07997 * 120.00268 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00410 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00107 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46812 * 5.00411 * 3 2 1 30 30 H 1.08994 * 109.47273 * 244.99924 * 3 2 1 31 31 H 1.08998 * 109.46420 * 30.00391 * 5 4 3 32 32 H 1.08995 * 109.46904 * 150.00397 * 5 4 3 33 33 H 0.97004 * 119.99964 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47120 * 59.99760 * 16 14 4 35 35 H 1.08998 * 109.46862 * 300.00562 * 16 14 4 36 36 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 37 37 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 38 38 H 1.07994 * 120.01556 * 0.02613 * 20 19 18 39 39 H 1.08005 * 119.96575 * 180.24959 * 21 20 19 40 40 H 1.08000 * 119.95031 * 179.71714 * 22 21 20 41 41 H 1.08006 * 120.03196 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5589 1.8648 2.4250 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8369 1.6366 8 6 2.5185 4.0665 3.6084 9 7 2.7680 5.3568 3.6571 10 14 1.7239 3.2130 5.0678 11 1 2.7799 2.7228 5.9896 12 1 0.8471 4.1730 5.7853 13 1 0.9132 2.0649 4.5886 14 6 4.2497 0.8660 0.9823 15 8 5.0200 0.8886 1.9190 16 6 4.6969 0.3173 -0.3480 17 6 6.1530 -0.1413 -0.2471 18 8 6.5773 -0.6611 -1.5088 19 6 7.8559 -1.1143 -1.5910 20 6 8.6869 -1.0544 -0.4814 21 6 9.9845 -1.5205 -0.5653 22 6 10.4598 -2.0359 -1.7570 23 6 9.6352 -2.0921 -2.8667 24 17 10.2347 -2.7404 -4.3613 25 6 8.3337 -1.6320 -2.7856 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 1.4888 1.6964 2.5460 32 1 3.0990 1.3601 3.2260 33 1 2.5385 5.8656 4.4505 34 1 4.6120 1.0937 -1.1084 35 1 4.0677 -0.5296 -0.6217 36 1 6.2376 -0.9178 0.5132 37 1 6.7825 0.7054 0.0268 38 1 8.3179 -0.6479 0.4486 39 1 10.6301 -1.4776 0.2995 40 1 11.4761 -2.3955 -1.8217 41 1 7.6898 -1.6762 -3.6516 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000552780383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:40 Heat of formation + Delta-G solvation = -33.261497 kcal Electronic energy + Delta-G solvation = -23850.515713 eV Core-core repulsion = 20143.429111 eV Total energy + Delta-G solvation = -3707.086601 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.42576 -39.35684 -37.89331 -36.54305 -35.89444 -33.33543 -32.33405 -32.05375 -31.02082 -29.87389 -28.28855 -25.74685 -24.75247 -23.03786 -22.44160 -21.45431 -20.08600 -18.87887 -18.24195 -16.99534 -16.74791 -16.37832 -16.27458 -15.96743 -15.69662 -15.14952 -14.88755 -14.47562 -14.08946 -14.02849 -13.68150 -13.63070 -13.21159 -12.92895 -12.49107 -12.30482 -12.12076 -12.05460 -11.80425 -11.67140 -11.57317 -11.37638 -11.20531 -11.03792 -10.99765 -10.78014 -10.57789 -10.20069 -9.62525 -9.33311 -9.21178 -9.14347 -8.63704 -8.50593 -7.86943 -6.13540 -4.12867 0.84891 1.07315 1.74133 2.30066 2.89929 3.16605 3.25693 3.31840 3.33569 3.36287 3.90669 4.35178 4.47307 4.73646 4.78884 4.79908 4.92282 4.96695 5.01089 5.11556 5.16186 5.20768 5.25600 5.38475 5.49174 5.58245 5.70995 5.75264 5.87013 5.89921 6.00667 6.07271 6.09408 6.29110 6.62050 6.66133 6.78385 6.87068 7.14930 7.23565 7.54978 8.09381 8.40166 8.77835 8.89859 9.46310 10.99667 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.002404 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.286180 B =11643.418438 C =12669.534919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.171 4.171 3 C 0.134 3.866 4 N -0.585 5.585 5 C 0.217 3.783 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.514 3.486 15 O -0.541 6.541 16 C -0.140 4.140 17 C 0.075 3.925 18 O -0.313 6.313 19 C 0.151 3.849 20 C -0.203 4.203 21 C -0.066 4.066 22 C -0.154 4.154 23 C 0.002 3.998 24 Cl -0.067 7.067 25 C -0.149 4.149 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.122 -16.171 -13.582 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.190 4.190 3 C 0.010 3.990 4 N -0.315 5.315 5 C 0.097 3.903 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.300 3.700 15 O -0.419 6.419 16 C -0.180 4.180 17 C -0.001 4.001 18 O -0.227 6.227 19 C 0.105 3.895 20 C -0.221 4.221 21 C -0.084 4.084 22 C -0.173 4.173 23 C -0.025 4.025 24 Cl -0.038 7.038 25 C -0.169 4.169 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.393 -16.010 -13.217 22.393 hybrid contribution -0.408 -0.270 0.854 0.984 sum 7.984 -16.281 -12.364 21.947 Atomic orbital electron populations 1.23855 0.95856 1.01903 1.00279 1.23428 0.96439 0.98993 1.00161 1.20663 0.93192 0.95505 0.89633 1.47872 1.10532 1.59939 1.13184 1.19685 0.95006 0.95212 0.80419 1.21304 1.41367 0.91054 1.03157 0.90707 1.24850 0.95241 0.94722 0.98134 1.69894 1.47614 1.06607 1.29321 0.86864 0.79893 0.79698 0.83342 1.19895 1.21015 1.19028 1.19965 0.82402 0.78579 0.89018 1.90692 1.52426 1.56704 1.42099 1.21547 0.95328 1.03110 0.98009 1.22567 0.95418 0.99251 0.82820 1.85984 1.25207 1.75418 1.36069 1.18750 0.84073 0.93313 0.93387 1.21559 0.95413 1.05924 0.99245 1.20938 0.94903 0.95325 0.97234 1.20948 1.00335 1.04095 0.91872 1.20539 0.93769 1.00210 0.87954 1.98374 1.87896 1.84696 1.32874 1.20185 0.94849 1.04235 0.97594 0.88168 0.88680 0.87655 0.89049 0.90186 0.95071 0.94522 0.92506 0.87980 0.88297 0.90850 0.90572 0.84202 0.84660 0.84904 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 14.32 29.02 0.42 -1.68 16 2 C -0.17 -2.16 9.74 -36.02 -0.35 -2.51 16 3 C 0.13 1.98 5.65 -5.19 -0.03 1.95 16 4 N -0.58 -11.35 2.44 -176.43 -0.43 -11.78 16 5 C 0.22 5.14 4.23 -5.19 -0.02 5.12 16 6 C -0.53 -14.84 9.94 -34.44 -0.34 -15.18 16 7 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 8 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 10 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 14 C 0.51 9.67 7.67 -10.99 -0.08 9.58 16 15 O -0.54 -12.35 15.56 5.55 0.09 -12.26 16 16 C -0.14 -1.87 4.62 -27.89 -0.13 -2.00 16 17 C 0.07 0.98 4.03 37.16 0.15 1.13 16 18 O -0.31 -3.94 10.14 -19.43 -0.20 -4.14 16 19 C 0.15 1.79 6.69 -39.22 -0.26 1.52 16 20 C -0.20 -2.21 9.04 -39.43 -0.36 -2.57 16 21 C -0.07 -0.60 10.04 -39.61 -0.40 -1.00 16 22 C -0.15 -1.39 9.83 -39.52 -0.39 -1.78 16 23 C 0.00 0.02 6.32 -39.52 -0.25 -0.23 16 24 Cl -0.07 -0.61 28.95 -51.86 -1.50 -2.11 16 25 C -0.15 -1.61 9.77 -39.40 -0.38 -1.99 16 26 H 0.10 1.14 7.84 -52.49 -0.41 0.73 16 27 H 0.09 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.11 1.23 7.83 -52.48 -0.41 0.82 16 29 H 0.09 1.43 7.72 -51.93 -0.40 1.03 16 30 H 0.08 0.98 6.44 -51.93 -0.33 0.65 16 31 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 32 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.10 1.24 7.40 -51.93 -0.38 0.86 16 35 H 0.10 1.11 7.77 -51.93 -0.40 0.71 16 36 H 0.07 0.95 7.63 -51.93 -0.40 0.56 16 37 H 0.08 1.06 7.61 -51.93 -0.39 0.66 16 38 H 0.14 1.50 6.30 -52.49 -0.33 1.17 16 39 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -32.60 365.74 -8.43 -41.03 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.47 Total: 1.29 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.53 Total: -7.65 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.34 Total: -38.21 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.11 Total: -16.40 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.60 -8.43 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552780383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.766 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds