Wall clock time and date at job start Tue Mar 31 2020 14:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00211 * 2 1 4 4 N 1.46504 * 109.46806 * 125.00057 * 3 2 1 5 5 C 1.46505 * 120.00149 * 270.00040 * 4 3 2 6 6 C 1.50702 * 109.46836 * 270.00364 * 5 4 3 7 7 H 1.07994 * 120.00445 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99368 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99702 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00160 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46983 * 89.99885 * 10 8 6 12 12 H 1.48502 * 109.46686 * 209.99557 * 10 8 6 13 13 H 1.48496 * 109.47191 * 329.99556 * 10 8 6 14 14 C 1.34777 * 119.99736 * 90.00444 * 4 3 2 15 15 O 1.21288 * 119.99593 * 179.97438 * 14 4 3 16 16 C 1.50697 * 120.00369 * 359.97438 * 14 4 3 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 4 18 18 O 1.42898 * 109.47319 * 180.02562 * 17 16 14 19 19 C 1.35900 * 117.00172 * 179.97438 * 18 17 16 20 20 C 1.38761 * 120.04606 * 359.72218 * 19 18 17 21 21 C 1.38131 * 119.96646 * 179.74009 * 20 19 18 22 22 C 1.38265 * 120.06854 * 0.56021 * 21 20 19 23 23 C 1.38370 * 120.09963 * 359.69479 * 22 21 20 24 24 Cl 1.73596 * 119.98693 * 180.02562 * 23 22 21 25 25 C 1.38278 * 120.02485 * 0.02562 * 23 22 21 26 26 H 1.07997 * 120.00268 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00410 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00107 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46812 * 5.00411 * 3 2 1 30 30 H 1.08994 * 109.47273 * 244.99924 * 3 2 1 31 31 H 1.08998 * 109.46420 * 30.00391 * 5 4 3 32 32 H 1.08995 * 109.46904 * 150.00397 * 5 4 3 33 33 H 0.97004 * 119.99964 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47120 * 59.99760 * 16 14 4 35 35 H 1.08998 * 109.46862 * 300.00562 * 16 14 4 36 36 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 37 37 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 38 38 H 1.07994 * 120.01556 * 0.02613 * 20 19 18 39 39 H 1.08005 * 119.96575 * 180.24959 * 21 20 19 40 40 H 1.08000 * 119.95031 * 179.71714 * 22 21 20 41 41 H 1.08006 * 120.03196 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5589 1.8648 2.4250 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8369 1.6366 8 6 2.5185 4.0665 3.6084 9 7 2.7680 5.3568 3.6571 10 14 1.7239 3.2130 5.0678 11 1 2.7799 2.7228 5.9896 12 1 0.8471 4.1730 5.7853 13 1 0.9132 2.0649 4.5886 14 6 4.2497 0.8660 0.9823 15 8 5.0200 0.8886 1.9190 16 6 4.6969 0.3173 -0.3480 17 6 6.1530 -0.1413 -0.2471 18 8 6.5773 -0.6611 -1.5088 19 6 7.8559 -1.1143 -1.5910 20 6 8.6869 -1.0544 -0.4814 21 6 9.9845 -1.5205 -0.5653 22 6 10.4598 -2.0359 -1.7570 23 6 9.6352 -2.0921 -2.8667 24 17 10.2347 -2.7404 -4.3613 25 6 8.3337 -1.6320 -2.7856 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6213 1.4026 -0.9313 31 1 1.4888 1.6964 2.5460 32 1 3.0990 1.3601 3.2260 33 1 2.5385 5.8656 4.4505 34 1 4.6120 1.0937 -1.1084 35 1 4.0677 -0.5296 -0.6217 36 1 6.2376 -0.9178 0.5132 37 1 6.7825 0.7054 0.0268 38 1 8.3179 -0.6479 0.4486 39 1 10.6301 -1.4776 0.2995 40 1 11.4761 -2.3955 -1.8217 41 1 7.6898 -1.6762 -3.6516 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000552780383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:40 Heat of formation + Delta-G solvation = -51.963870 kcal Electronic energy + Delta-G solvation = -23851.326708 eV Core-core repulsion = 20143.429111 eV Total energy + Delta-G solvation = -3707.897597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.37328 -40.73758 -38.75859 -37.36487 -37.24760 -35.11333 -33.76418 -33.33360 -31.86016 -30.82296 -29.98407 -26.97816 -26.08108 -24.13394 -23.64550 -22.60702 -21.13923 -20.02404 -19.40268 -19.08456 -17.93834 -17.45761 -17.37425 -16.97018 -16.91015 -16.32343 -16.03208 -15.89955 -15.49027 -14.82873 -14.76804 -14.63566 -14.55347 -14.26736 -14.12284 -13.63196 -13.50038 -13.06208 -12.95968 -12.87411 -12.83697 -12.52076 -12.41312 -12.22900 -12.18514 -11.94816 -11.84861 -11.74331 -11.72847 -10.84089 -10.78816 -10.31304 -9.91807 -9.49108 -9.33548 -8.34488 -6.39549 0.06115 0.28707 0.97463 1.30013 1.34560 1.35926 1.44666 1.68852 1.88606 2.30198 2.57566 2.59568 3.00065 3.55885 3.73932 3.84599 3.88494 4.00012 4.08179 4.11776 4.17059 4.21691 4.38001 4.39618 4.46057 4.67015 4.69028 4.76887 4.80846 4.88081 4.92972 5.08540 5.10355 5.23139 5.32807 5.44303 5.49852 5.51849 5.73493 5.92484 6.21619 6.23973 6.60366 6.62918 7.18977 7.33168 8.82260 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.002404 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.286180 B =11643.418438 C =12669.534919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.183 4.183 3 C 0.129 3.871 4 N -0.593 5.593 5 C 0.227 3.773 6 C -0.535 4.535 7 H 0.031 0.969 8 C 0.012 3.988 9 N -0.944 5.944 10 Si 0.945 3.055 11 H -0.276 1.276 12 H -0.276 1.276 13 H -0.239 1.239 14 C 0.506 3.494 15 O -0.591 6.591 16 C -0.125 4.125 17 C 0.082 3.918 18 O -0.316 6.316 19 C 0.129 3.871 20 C -0.214 4.214 21 C -0.065 4.065 22 C -0.149 4.149 23 C -0.005 4.005 24 Cl -0.059 7.059 25 C -0.155 4.155 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.135 0.865 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -18.607 -14.291 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.202 4.202 3 C 0.007 3.993 4 N -0.322 5.322 5 C 0.105 3.895 6 C -0.574 4.574 7 H 0.049 0.951 8 C -0.186 4.186 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.201 1.201 12 H -0.201 1.201 13 H -0.162 1.162 14 C 0.295 3.705 15 O -0.472 6.472 16 C -0.164 4.164 17 C 0.007 3.993 18 O -0.230 6.230 19 C 0.083 3.917 20 C -0.233 4.233 21 C -0.083 4.083 22 C -0.168 4.168 23 C -0.032 4.032 24 Cl -0.030 7.030 25 C -0.174 4.174 26 H 0.116 0.884 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.153 0.847 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.875 -18.470 -13.986 24.470 hybrid contribution -0.169 0.517 0.960 1.103 sum 7.706 -17.952 -13.027 23.481 Atomic orbital electron populations 1.24077 0.95586 1.02938 0.98133 1.23309 0.96731 0.98116 1.02012 1.20900 0.92761 0.96638 0.88976 1.47943 1.11764 1.59529 1.12978 1.19302 0.95483 0.92152 0.82577 1.21544 1.40549 0.93424 1.01836 0.95081 1.25825 0.95961 0.95344 1.01497 1.70047 1.49366 1.08489 1.30540 0.85753 0.79100 0.79379 0.78979 1.20122 1.20086 1.16205 1.20850 0.81580 0.77642 0.90402 1.90661 1.53635 1.58659 1.44230 1.21442 0.95850 1.04416 0.94728 1.22364 0.95010 0.98700 0.83265 1.85939 1.25919 1.75767 1.35349 1.18951 0.83963 0.94545 0.94210 1.21669 0.96287 1.06432 0.98930 1.21239 0.94443 0.94382 0.98243 1.21259 1.01195 1.03024 0.91321 1.20683 0.93693 1.00170 0.88645 1.98377 1.87701 1.84523 1.32401 1.20304 0.95422 1.04235 0.97459 0.88362 0.86446 0.86210 0.90431 0.87583 0.93515 0.96169 0.92277 0.86343 0.85179 0.91053 0.92129 0.84711 0.82262 0.82668 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 14.32 67.79 0.97 -2.44 16 2 C -0.18 -4.13 9.74 25.65 0.25 -3.88 16 3 C 0.13 3.65 5.65 85.63 0.48 4.14 16 4 N -0.59 -22.84 2.44 -830.48 -2.03 -24.86 16 5 C 0.23 10.77 4.23 85.63 0.36 11.13 16 6 C -0.53 -30.87 9.94 25.60 0.25 -30.61 16 7 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 8 C 0.01 0.69 5.47 84.65 0.46 1.16 16 9 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 10 Si 0.95 43.86 27.47 68.60 1.88 45.75 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 14 C 0.51 19.06 7.67 87.66 0.67 19.74 16 15 O -0.59 -27.71 15.56 -3.05 -0.05 -27.76 16 16 C -0.12 -3.19 4.62 29.85 0.14 -3.05 16 17 C 0.08 2.13 4.03 71.98 0.29 2.42 16 18 O -0.32 -7.72 10.14 -92.43 -0.94 -8.65 16 19 C 0.13 2.98 6.69 22.50 0.15 3.13 16 20 C -0.21 -4.59 9.04 22.37 0.20 -4.39 16 21 C -0.07 -1.10 10.04 22.25 0.22 -0.87 16 22 C -0.15 -2.41 9.83 22.31 0.22 -2.19 16 23 C -0.01 -0.09 6.32 22.31 0.14 0.05 16 24 Cl -0.06 -0.97 28.95 -2.72 -0.08 -1.05 16 25 C -0.15 -3.19 9.77 22.39 0.22 -2.97 16 26 H 0.10 2.01 7.84 -2.91 -0.02 1.98 16 27 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.12 2.38 7.83 -2.91 -0.02 2.36 16 29 H 0.08 2.39 7.72 -2.39 -0.02 2.37 16 30 H 0.11 2.39 6.44 -2.39 -0.02 2.37 16 31 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 32 H 0.02 1.03 6.85 -2.39 -0.02 1.01 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.12 2.67 7.40 -2.39 -0.02 2.65 16 35 H 0.13 2.54 7.77 -2.39 -0.02 2.52 16 36 H 0.07 1.86 7.63 -2.39 -0.02 1.85 16 37 H 0.06 1.74 7.61 -2.39 -0.02 1.72 16 38 H 0.14 2.96 6.30 -2.91 -0.02 2.94 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -73.44 365.74 5.11 -68.33 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.97 Total: 15.70 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.04 Total: -8.64 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -1.73 Total: -83.68 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.98 Total: -36.41 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -73.44 5.11 -68.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000552780383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.370 kcal (2) G-P(sol) polarization free energy of solvation -73.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds