Wall clock time and date at job start Tue Mar 31 2020 14:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47291 * 2 1 4 4 H 1.08995 * 109.47677 * 175.06707 * 3 2 1 5 5 C 1.50698 * 109.47000 * 55.06315 * 3 2 1 6 6 H 1.08006 * 119.99723 * 245.69793 * 5 3 2 7 7 C 1.37878 * 120.00237 * 65.70131 * 5 3 2 8 8 N 1.31517 * 119.99647 * 5.49741 * 7 5 3 9 9 Si 1.86796 * 120.00157 * 185.49308 * 7 5 3 10 10 H 1.48501 * 109.47167 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47467 * 300.00098 * 9 7 5 12 12 H 1.48501 * 109.47019 * 60.00214 * 9 7 5 13 13 N 1.46906 * 109.46944 * 295.06684 * 3 2 1 14 14 C 1.46907 * 110.99731 * 279.82871 * 13 3 2 15 15 C 1.52994 * 109.47054 * 185.02072 * 14 13 3 16 16 S 1.81394 * 109.47163 * 179.97438 * 15 14 13 17 17 O 1.42091 * 110.54567 * 291.62503 * 16 15 14 18 18 O 1.42103 * 110.54332 * 68.37642 * 16 15 14 19 19 C 1.76206 * 104.45072 * 179.97438 * 16 15 14 20 20 C 1.38355 * 119.44646 * 90.00022 * 19 16 15 21 21 C 1.38351 * 119.30988 * 180.02562 * 20 19 16 22 22 C 1.40069 * 118.28128 * 359.97438 * 21 20 19 23 23 C 1.43197 * 120.56634 * 180.02562 * 22 21 20 24 24 N 9.96368 * 129.39062 * 129.53649 * 13 1 2 25 25 C 1.39583 * 118.87153 * 0.02562 * 22 21 20 26 26 N 1.31699 * 120.55729 * 359.72102 * 25 22 21 27 27 H 1.09005 * 109.47691 * 185.01007 * 1 2 3 28 28 H 1.09002 * 109.47613 * 305.01368 * 1 2 3 29 29 H 1.09000 * 109.47244 * 65.00794 * 1 2 3 30 30 H 1.09001 * 109.47234 * 239.99551 * 2 1 3 31 31 H 1.09004 * 109.46921 * 119.99301 * 2 1 3 32 32 H 0.96999 * 120.00072 * 355.14398 * 8 7 5 33 33 H 1.00898 * 111.00153 * 43.77841 * 13 3 2 34 34 H 1.08998 * 109.47076 * 305.02076 * 14 13 3 35 35 H 1.09001 * 109.46697 * 65.01773 * 14 13 3 36 36 H 1.09006 * 109.46938 * 299.99771 * 15 14 13 37 37 H 1.08999 * 109.47412 * 59.99510 * 15 14 13 38 38 H 1.08001 * 120.34693 * 359.97438 * 20 19 16 39 39 H 1.07998 * 120.85918 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.72745 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 0.0884 5 6 1.4403 2.1873 1.1648 6 1 0.7568 3.0048 0.9887 7 6 1.7642 1.8252 2.4551 8 7 2.6773 0.9033 2.6697 9 14 0.9063 2.6440 3.8983 10 1 1.4305 2.0824 5.1692 11 1 1.1618 4.1064 3.8613 12 1 -0.5551 2.3945 3.8118 13 7 1.6499 2.0998 -1.2546 14 6 2.5595 1.7301 -2.3474 15 6 2.1992 2.5274 -3.6025 16 16 3.3228 2.0715 -4.9517 17 8 4.6405 2.5280 -4.6790 18 8 3.0825 0.7351 -5.3707 19 6 2.7948 3.0552 -6.3149 20 6 3.3495 4.3084 -6.5046 21 6 2.9325 5.0785 -7.5756 22 6 1.9570 4.5519 -8.4318 23 6 1.4902 5.3067 -9.5556 24 7 1.1221 5.9067 -10.4472 25 6 1.4476 3.2788 -8.1709 26 7 1.8809 2.5825 -7.1405 27 1 -0.3635 -1.0237 0.0897 28 1 -0.3634 0.5896 0.8417 29 1 -0.3634 0.4342 -0.9314 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 3.0721 0.4282 1.9218 33 1 0.6931 1.8858 -1.4927 34 1 3.5860 1.9538 -2.0571 35 1 2.4645 0.6641 -2.5542 36 1 1.1726 2.3036 -3.8928 37 1 2.2941 3.5933 -3.3956 38 1 4.0996 4.6819 -5.8233 39 1 3.3489 6.0601 -7.7476 40 1 0.6947 2.8595 -8.8219 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564665979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:21 Heat of formation + Delta-G solvation = -1.334086 kcal Electronic energy + Delta-G solvation = -24012.919042 eV Core-core repulsion = 20341.553375 eV Total energy + Delta-G solvation = -3671.365667 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96715 -37.32990 -37.30018 -37.18019 -36.14253 -33.75795 -33.47686 -32.48007 -31.33090 -29.24808 -25.97665 -25.54338 -24.58746 -23.66377 -22.51009 -19.93825 -19.67950 -19.65068 -18.21145 -17.60900 -17.05719 -16.34023 -15.98448 -15.48627 -15.28904 -15.09812 -14.73557 -14.25130 -14.06082 -13.96125 -13.83377 -13.69230 -13.65756 -13.14004 -13.11670 -12.84880 -12.34185 -12.27083 -12.18221 -11.82177 -11.74213 -11.54527 -11.22228 -10.85719 -10.79544 -10.72845 -10.35777 -10.26626 -10.15979 -10.14485 -10.07047 -9.92904 -8.71649 -8.29455 -7.55130 -6.34262 -4.05308 -0.61916 -0.20295 0.41018 1.90586 2.07487 2.49050 2.96950 2.98805 3.43408 3.44187 3.45636 3.58236 3.63300 3.90279 4.10259 4.25572 4.33757 4.48021 4.57092 4.77919 4.81181 4.98923 5.11984 5.17360 5.35523 5.44631 5.59394 5.71451 5.87026 6.04532 6.09042 6.25707 6.62095 6.66386 6.88213 6.88451 6.94517 7.15940 7.25334 7.74544 8.13678 8.29858 8.55464 8.86683 9.63204 11.01982 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.002519 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.195492 B =11114.867186 C =11460.956555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C 0.200 3.800 4 H 0.031 0.969 5 C -0.573 4.573 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 1.068 2.932 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.666 5.666 14 C 0.064 3.936 15 C -0.587 4.587 16 S 2.496 3.504 17 O -0.923 6.923 18 O -0.910 6.910 19 C -0.403 4.403 20 C -0.086 4.086 21 C -0.039 4.039 22 C -0.031 4.031 23 C 0.250 3.750 24 N -0.388 5.388 25 C 0.133 3.867 26 N -0.388 5.388 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.270 0.730 33 H 0.333 0.667 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.158 0.842 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 6.093 -19.656 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.197 4.197 3 C 0.092 3.908 4 H 0.049 0.951 5 C -0.612 4.612 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.551 5.551 9 Si 0.896 3.104 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.298 5.298 14 C -0.068 4.068 15 C -0.719 4.719 16 S 2.671 3.329 17 O -0.920 6.920 18 O -0.907 6.907 19 C -0.621 4.621 20 C -0.106 4.106 21 C -0.069 4.069 22 C -0.036 4.036 23 C -0.067 4.067 24 N -0.063 5.063 25 C -0.031 4.031 26 N -0.096 5.096 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.188 0.812 39 H 0.176 0.824 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.765 6.288 -19.130 20.152 hybrid contribution -0.449 0.301 -2.065 2.135 sum -1.214 6.589 -21.195 22.229 Atomic orbital electron populations 1.21604 0.96648 0.99359 1.01402 1.22307 0.96356 1.01228 0.99837 1.19440 0.96061 0.88614 0.86684 0.95094 1.21758 1.30283 1.18240 0.90915 0.92581 1.25728 0.95747 0.97062 1.00027 1.70814 1.24350 1.24290 1.35689 0.83549 0.75499 0.75563 0.75742 1.20957 1.21520 1.21531 1.60825 1.04830 1.62179 1.01920 1.21633 0.99943 0.95544 0.89692 1.30269 1.15992 1.12655 1.12998 1.06125 0.76326 0.74920 0.75530 1.93620 1.32201 1.81961 1.84215 1.93601 1.85562 1.31665 1.79893 1.33869 1.03197 1.07697 1.17288 1.22097 0.98076 0.92643 0.97799 1.21837 0.92791 1.00373 0.91853 1.17269 0.99011 0.95163 0.92197 1.25287 0.94399 0.93902 0.93132 1.81324 1.07238 1.07886 1.09850 1.23332 0.96814 0.88872 0.94119 1.67942 1.07508 1.32466 1.01644 0.95146 0.90778 0.94871 0.95727 0.91191 0.91842 0.84860 0.89791 0.94218 0.84478 0.83659 0.81205 0.82390 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.38 37.15 0.35 -2.26 16 2 C -0.16 -3.40 5.45 -26.73 -0.15 -3.54 16 3 C 0.20 4.62 1.95 -68.86 -0.13 4.49 16 4 H 0.03 0.79 7.32 -51.93 -0.38 0.41 16 5 C -0.57 -14.87 7.18 -34.44 -0.25 -15.12 16 6 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 7 C 0.02 0.49 5.29 -17.82 -0.09 0.40 16 8 N -0.91 -26.12 13.21 55.43 0.73 -25.39 16 9 Si 1.07 24.15 29.91 -169.99 -5.08 19.06 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.67 -12.66 6.19 -107.95 -0.67 -13.33 16 14 C 0.06 0.98 5.49 -3.82 -0.02 0.96 16 15 C -0.59 -6.29 6.28 37.15 0.23 -6.06 16 16 S 2.50 27.79 5.22 -107.50 -0.56 27.23 16 17 O -0.92 -11.99 17.09 -57.54 -0.98 -12.97 16 18 O -0.91 -13.25 17.72 -57.54 -1.02 -14.27 16 19 C -0.40 -3.69 6.53 -17.47 -0.11 -3.81 16 20 C -0.09 -0.57 9.49 -39.50 -0.37 -0.94 16 21 C -0.04 -0.20 9.91 -38.85 -0.38 -0.59 16 22 C -0.03 -0.19 5.74 -106.78 -0.61 -0.80 16 23 C 0.25 1.78 15.37 -22.48 -0.35 1.43 16 24 N -0.39 -3.69 18.54 41.83 0.78 -2.92 16 25 C 0.13 0.90 10.92 -17.11 -0.19 0.72 16 26 N -0.39 -3.71 10.02 -12.09 -0.12 -3.83 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.61 6.88 -51.93 -0.36 1.25 16 29 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 30 H 0.02 0.48 7.13 -51.93 -0.37 0.11 16 31 H 0.07 1.67 6.17 -51.93 -0.32 1.35 16 32 H 0.27 7.62 5.62 -40.82 -0.23 7.39 16 33 H 0.33 5.91 6.79 -39.29 -0.27 5.64 16 34 H 0.08 1.31 7.95 -51.93 -0.41 0.90 16 35 H 0.04 0.60 7.20 -51.93 -0.37 0.23 16 36 H 0.14 1.22 8.14 -51.92 -0.42 0.80 16 37 H 0.15 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.17 0.80 7.55 -52.49 -0.40 0.41 16 39 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -34.65 355.84 -8.42 -43.07 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.77 Total: 3.09 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -2.08 Total: -25.12 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.72 Total: -45.46 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -2.00 Total: -27.24 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.06 kcal Atomic # 16 Polarization: 27.79 SS G_CDS: -0.56 Total: 27.23 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.65 -8.42 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564665979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.740 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds