Wall clock time and date at job start Tue Mar 31 2020 14:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47291 * 2 1 4 4 H 1.08995 * 109.47677 * 175.06707 * 3 2 1 5 5 C 1.50698 * 109.47000 * 55.06315 * 3 2 1 6 6 H 1.08006 * 119.99723 * 245.69793 * 5 3 2 7 7 C 1.37878 * 120.00237 * 65.70131 * 5 3 2 8 8 N 1.31517 * 119.99647 * 5.49741 * 7 5 3 9 9 Si 1.86796 * 120.00157 * 185.49308 * 7 5 3 10 10 H 1.48501 * 109.47167 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47467 * 300.00098 * 9 7 5 12 12 H 1.48501 * 109.47019 * 60.00214 * 9 7 5 13 13 N 1.46906 * 109.46944 * 295.06684 * 3 2 1 14 14 C 1.46907 * 110.99731 * 279.82871 * 13 3 2 15 15 C 1.52994 * 109.47054 * 185.02072 * 14 13 3 16 16 S 1.81394 * 109.47163 * 179.97438 * 15 14 13 17 17 O 1.42091 * 110.54567 * 291.62503 * 16 15 14 18 18 O 1.42103 * 110.54332 * 68.37642 * 16 15 14 19 19 C 1.76206 * 104.45072 * 179.97438 * 16 15 14 20 20 C 1.38355 * 119.44646 * 90.00022 * 19 16 15 21 21 C 1.38351 * 119.30988 * 180.02562 * 20 19 16 22 22 C 1.40069 * 118.28128 * 359.97438 * 21 20 19 23 23 C 1.43197 * 120.56634 * 180.02562 * 22 21 20 24 24 N 9.96368 * 129.39062 * 129.53649 * 13 1 2 25 25 C 1.39583 * 118.87153 * 0.02562 * 22 21 20 26 26 N 1.31699 * 120.55729 * 359.72102 * 25 22 21 27 27 H 1.09005 * 109.47691 * 185.01007 * 1 2 3 28 28 H 1.09002 * 109.47613 * 305.01368 * 1 2 3 29 29 H 1.09000 * 109.47244 * 65.00794 * 1 2 3 30 30 H 1.09001 * 109.47234 * 239.99551 * 2 1 3 31 31 H 1.09004 * 109.46921 * 119.99301 * 2 1 3 32 32 H 0.96999 * 120.00072 * 355.14398 * 8 7 5 33 33 H 1.00898 * 111.00153 * 43.77841 * 13 3 2 34 34 H 1.08998 * 109.47076 * 305.02076 * 14 13 3 35 35 H 1.09001 * 109.46697 * 65.01773 * 14 13 3 36 36 H 1.09006 * 109.46938 * 299.99771 * 15 14 13 37 37 H 1.08999 * 109.47412 * 59.99510 * 15 14 13 38 38 H 1.08001 * 120.34693 * 359.97438 * 20 19 16 39 39 H 1.07998 * 120.85918 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.72745 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 0.0884 5 6 1.4403 2.1873 1.1648 6 1 0.7568 3.0048 0.9887 7 6 1.7642 1.8252 2.4551 8 7 2.6773 0.9033 2.6697 9 14 0.9063 2.6440 3.8983 10 1 1.4305 2.0824 5.1692 11 1 1.1618 4.1064 3.8613 12 1 -0.5551 2.3945 3.8118 13 7 1.6499 2.0998 -1.2546 14 6 2.5595 1.7301 -2.3474 15 6 2.1992 2.5274 -3.6025 16 16 3.3228 2.0715 -4.9517 17 8 4.6405 2.5280 -4.6790 18 8 3.0825 0.7351 -5.3707 19 6 2.7948 3.0552 -6.3149 20 6 3.3495 4.3084 -6.5046 21 6 2.9325 5.0785 -7.5756 22 6 1.9570 4.5519 -8.4318 23 6 1.4902 5.3067 -9.5556 24 7 1.1221 5.9067 -10.4472 25 6 1.4476 3.2788 -8.1709 26 7 1.8809 2.5825 -7.1405 27 1 -0.3635 -1.0237 0.0897 28 1 -0.3634 0.5896 0.8417 29 1 -0.3634 0.4342 -0.9314 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 3.0721 0.4282 1.9218 33 1 0.6931 1.8858 -1.4927 34 1 3.5860 1.9538 -2.0571 35 1 2.4645 0.6641 -2.5542 36 1 1.1726 2.3036 -3.8928 37 1 2.2941 3.5933 -3.3956 38 1 4.0996 4.6819 -5.8233 39 1 3.3489 6.0601 -7.7476 40 1 0.6947 2.8595 -8.8219 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564665979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:21 Heat of formation + Delta-G solvation = -27.640868 kcal Electronic energy + Delta-G solvation = -24014.059790 eV Core-core repulsion = 20341.553375 eV Total energy + Delta-G solvation = -3672.506415 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51775 -38.81461 -38.28422 -37.94108 -37.12457 -35.34168 -34.01953 -33.10485 -33.02249 -30.65104 -27.46976 -26.48536 -25.48294 -25.10159 -23.76541 -21.42952 -20.60236 -20.33423 -19.06831 -18.84253 -18.21144 -17.38988 -17.07192 -16.51796 -15.97778 -15.85175 -15.68107 -15.53279 -15.43973 -15.31162 -14.68253 -14.52287 -14.51051 -14.40740 -14.27036 -13.83475 -13.71567 -13.30506 -13.23797 -13.17608 -13.11637 -12.70206 -12.56009 -12.49274 -12.10553 -11.93664 -11.86152 -11.75446 -11.64066 -11.24450 -10.89493 -10.73008 -10.61305 -10.31909 -9.13384 -8.45986 -6.17154 -1.28527 -0.98154 -0.05754 1.34646 1.48297 1.60064 1.66523 1.69757 1.85118 2.39195 2.42376 2.63930 2.75457 2.81433 3.30316 3.43502 3.45802 3.49604 3.67058 3.74533 3.81975 3.96035 4.30299 4.34546 4.36559 4.42123 4.53315 4.54061 4.59043 4.72146 4.82491 4.96959 5.13623 5.13991 5.23532 5.41280 5.58900 5.94848 6.11409 6.23826 6.33424 6.54397 6.72160 6.79942 7.59201 8.90902 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.002519 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.195492 B =11114.867186 C =11460.956555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.153 4.153 3 C 0.200 3.800 4 H -0.001 1.001 5 C -0.573 4.573 6 H 0.051 0.949 7 C -0.030 4.030 8 N -0.944 5.944 9 Si 1.109 2.891 10 H -0.292 1.292 11 H -0.275 1.275 12 H -0.271 1.271 13 N -0.668 5.668 14 C 0.053 3.947 15 C -0.577 4.577 16 S 2.514 3.486 17 O -0.948 6.948 18 O -0.952 6.952 19 C -0.413 4.413 20 C -0.084 4.084 21 C -0.024 4.024 22 C -0.025 4.025 23 C 0.278 3.722 24 N -0.429 5.429 25 C 0.133 3.867 26 N -0.418 5.418 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.259 0.741 33 H 0.342 0.658 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.189 0.811 39 H 0.193 0.807 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 7.812 -21.165 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.193 4.193 3 C 0.091 3.909 4 H 0.017 0.983 5 C -0.612 4.612 6 H 0.069 0.931 7 C -0.228 4.228 8 N -0.583 5.583 9 Si 0.933 3.067 10 H -0.218 1.218 11 H -0.201 1.201 12 H -0.196 1.196 13 N -0.300 5.300 14 C -0.078 4.078 15 C -0.709 4.709 16 S 2.693 3.307 17 O -0.945 6.945 18 O -0.949 6.949 19 C -0.633 4.633 20 C -0.105 4.105 21 C -0.053 4.053 22 C -0.031 4.031 23 C -0.038 4.038 24 N -0.104 5.104 25 C -0.031 4.031 26 N -0.127 5.127 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.178 0.822 37 H 0.187 0.813 38 H 0.207 0.793 39 H 0.211 0.789 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.952 7.985 -20.631 22.209 hybrid contribution -0.067 -0.181 -1.736 1.747 sum -2.018 7.804 -22.367 23.775 Atomic orbital electron populations 1.21528 0.94814 1.00357 1.01709 1.22194 0.97926 0.99959 0.99181 1.19224 0.93962 0.89587 0.88106 0.98307 1.22037 1.29418 1.17768 0.91951 0.93051 1.26961 0.95764 0.97103 1.03000 1.70914 1.26141 1.25881 1.35351 0.83009 0.75560 0.75388 0.72761 1.21803 1.20095 1.19584 1.60652 1.05886 1.61872 1.01590 1.21703 0.98938 0.96640 0.90543 1.30156 1.17121 1.13270 1.10381 1.05187 0.75681 0.74149 0.75676 1.93583 1.33816 1.82199 1.84891 1.93547 1.86041 1.34578 1.80750 1.33173 1.04713 1.08460 1.16956 1.22368 0.97966 0.91620 0.98509 1.22224 0.91458 1.01307 0.90295 1.17258 0.99136 0.94798 0.91872 1.25215 0.93203 0.92885 0.92491 1.81370 1.08629 1.09309 1.11126 1.23687 0.96879 0.89009 0.93542 1.67885 1.08464 1.33516 1.02804 0.93353 0.93096 0.92319 0.93995 0.94202 0.92962 0.83871 0.90721 0.94112 0.82214 0.81316 0.79347 0.78948 0.78173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.38 71.98 0.68 -4.15 16 2 C -0.15 -6.63 5.45 30.59 0.17 -6.46 16 3 C 0.20 9.38 1.95 44.17 0.09 9.46 16 4 H 0.00 -0.05 7.32 -2.39 -0.02 -0.07 16 5 C -0.57 -29.92 7.18 25.60 0.18 -29.73 16 6 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 7 C -0.03 -1.65 5.29 84.65 0.45 -1.20 16 8 N -0.94 -55.43 13.21 21.45 0.28 -55.15 16 9 Si 1.11 48.57 29.91 68.60 2.05 50.62 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 13 N -0.67 -24.85 6.19 -495.44 -3.07 -27.92 16 14 C 0.05 1.61 5.49 86.30 0.47 2.08 16 15 C -0.58 -11.36 6.28 71.98 0.45 -10.91 16 16 S 2.51 53.95 5.22 -56.49 -0.29 53.66 16 17 O -0.95 -24.15 17.09 -127.65 -2.18 -26.33 16 18 O -0.95 -27.76 17.72 -127.65 -2.26 -30.02 16 19 C -0.41 -6.77 6.53 84.71 0.55 -6.22 16 20 C -0.08 -0.86 9.49 22.32 0.21 -0.65 16 21 C -0.02 -0.15 9.91 22.74 0.23 0.07 16 22 C -0.03 -0.23 5.74 -21.27 -0.12 -0.35 16 23 C 0.28 3.23 15.37 88.33 1.36 4.59 16 24 N -0.43 -7.37 18.54 19.00 0.35 -7.02 16 25 C 0.13 1.48 10.92 85.04 0.93 2.41 16 26 N -0.42 -7.22 10.02 -192.18 -1.92 -9.14 16 27 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.05 2.17 6.88 -2.39 -0.02 2.15 16 29 H 0.06 1.90 6.68 -2.39 -0.02 1.88 16 30 H 0.04 1.63 7.13 -2.39 -0.02 1.62 16 31 H 0.04 1.96 6.17 -2.38 -0.01 1.94 16 32 H 0.26 15.31 5.62 -92.71 -0.52 14.79 16 33 H 0.34 11.51 6.79 -89.70 -0.61 10.90 16 34 H 0.07 2.38 7.95 -2.39 -0.02 2.36 16 35 H 0.04 1.22 7.20 -2.39 -0.02 1.21 16 36 H 0.16 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.19 1.18 7.55 -2.91 -0.02 1.16 16 39 H 0.19 -0.09 8.06 -2.91 -0.02 -0.12 16 40 H 0.20 1.11 8.06 -2.91 -0.02 1.08 16 Total: -1.00 -76.83 355.84 -0.68 -77.51 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.72 Total: 14.83 kcal Atomic # 6 Polarization: -46.68 SS G_CDS: 5.64 Total: -41.04 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -4.36 Total: -99.23 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -4.44 Total: -56.35 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.05 Total: 50.62 kcal Atomic # 16 Polarization: 53.95 SS G_CDS: -0.29 Total: 53.66 kcal Total: -76.83 -0.68 -77.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564665979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.871 kcal (2) G-P(sol) polarization free energy of solvation -76.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds