Wall clock time and date at job start Tue Mar 31 2020 14:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47201 * 2 1 4 4 H 1.08997 * 109.47210 * 54.88686 * 3 2 1 5 5 C 1.50711 * 109.46906 * 174.88326 * 3 2 1 6 6 H 1.08000 * 119.99515 * 120.00454 * 5 3 2 7 7 C 1.37868 * 120.00046 * 300.00192 * 5 3 2 8 8 N 1.31511 * 120.00278 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99775 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47472 * 90.00087 * 9 7 5 11 11 H 1.48507 * 109.46803 * 210.00018 * 9 7 5 12 12 H 1.48494 * 109.46959 * 329.99416 * 9 7 5 13 13 N 1.46895 * 109.47228 * 294.88166 * 3 2 1 14 14 C 1.46908 * 111.00163 * 154.15489 * 13 3 2 15 15 C 1.52991 * 109.47585 * 185.50527 * 14 13 3 16 16 S 1.81395 * 109.47473 * 180.02562 * 15 14 13 17 17 O 1.42094 * 110.54462 * 291.62718 * 16 15 14 18 18 O 1.42100 * 110.54127 * 68.37563 * 16 15 14 19 19 C 1.76199 * 104.45072 * 179.97438 * 16 15 14 20 20 C 1.38356 * 119.45306 * 90.00066 * 19 16 15 21 21 C 1.38339 * 119.31450 * 180.02562 * 20 19 16 22 22 C 1.40072 * 118.28442 * 359.97438 * 21 20 19 23 23 C 1.43200 * 120.56842 * 180.02562 * 22 21 20 24 24 N 9.96380 * 125.06166 * 159.23977 * 13 1 2 25 25 C 1.39589 * 118.86545 * 359.97438 * 22 21 20 26 26 N 1.31696 * 120.55783 * 359.72924 * 25 22 21 27 27 H 1.08995 * 109.47510 * 177.28942 * 1 2 3 28 28 H 1.08991 * 109.47227 * 297.29067 * 1 2 3 29 29 H 1.09006 * 109.47123 * 57.28962 * 1 2 3 30 30 H 1.09004 * 109.46924 * 239.99644 * 2 1 3 31 31 H 1.08998 * 109.46835 * 120.00224 * 2 1 3 32 32 H 0.97000 * 120.00490 * 179.97438 * 8 7 5 33 33 H 1.00898 * 111.00513 * 278.10825 * 13 3 2 34 34 H 1.09003 * 109.46672 * 305.51016 * 14 13 3 35 35 H 1.09005 * 109.46893 * 65.50436 * 14 13 3 36 36 H 1.09009 * 109.47325 * 300.00664 * 15 14 13 37 37 H 1.09005 * 109.47080 * 60.00023 * 15 14 13 38 38 H 1.08010 * 120.34320 * 359.97438 * 20 19 16 39 39 H 1.07996 * 120.86072 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.72043 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6038 1.9820 0.8406 5 6 3.5418 1.4442 0.1267 6 1 4.1485 1.8883 -0.6486 7 6 4.1410 0.8790 1.2323 8 7 3.4021 0.3388 2.1766 9 14 6.0023 0.8820 1.3896 10 1 6.4378 2.1153 2.0928 11 1 6.4354 -0.3087 2.1644 12 1 6.6135 0.8413 0.0369 13 7 1.6539 2.0983 -1.2564 14 6 1.5552 3.5537 -1.0819 15 6 1.0203 4.1865 -2.3679 16 16 0.8992 5.9836 -2.1527 17 8 -0.1207 6.3062 -1.2174 18 8 2.1933 6.5622 -2.0540 19 6 0.2780 6.5701 -3.6937 20 6 -1.0889 6.6720 -3.8818 21 6 -1.5735 7.1323 -5.0930 22 6 -0.6510 7.4801 -6.0880 23 6 -1.0987 7.9626 -7.3597 24 7 -1.4572 8.3465 -8.3669 25 6 0.7124 7.3493 -5.8183 26 7 1.1241 6.9114 -4.6465 27 1 -0.3634 -1.0264 -0.0486 28 1 -0.3633 0.4711 0.9132 29 1 -0.3634 0.5554 -0.8647 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8236 -0.0592 2.9543 33 1 2.2970 1.8659 -1.9982 34 1 0.8767 3.7756 -0.2581 35 1 2.5417 3.9606 -0.8597 36 1 1.6987 3.9645 -3.1917 37 1 0.0337 3.7796 -2.5901 38 1 -1.7706 6.3941 -3.0915 39 1 -2.6356 7.2221 -5.2667 40 1 1.4357 7.6131 -6.5757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564665981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:24 Heat of formation + Delta-G solvation = -2.853458 kcal Electronic energy + Delta-G solvation = -23971.224812 eV Core-core repulsion = 20299.793260 eV Total energy + Delta-G solvation = -3671.431552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91468 -37.28164 -37.20429 -36.59547 -36.02285 -33.42910 -33.42166 -32.42579 -31.54846 -29.38748 -26.17531 -25.76543 -24.53622 -23.10451 -21.91755 -19.89305 -19.72313 -19.47829 -18.11473 -17.55141 -16.84222 -16.35711 -15.76493 -15.42167 -15.16141 -14.82893 -14.76248 -14.50670 -14.05954 -13.99925 -13.76931 -13.62455 -13.51004 -13.06408 -12.97321 -12.46849 -12.16701 -12.07603 -11.89343 -11.65971 -11.59006 -11.28250 -11.17462 -10.96235 -10.76535 -10.71481 -10.66982 -10.26040 -10.16761 -10.08967 -9.66343 -9.55961 -9.16039 -8.43402 -7.48276 -6.05841 -4.19211 -0.55704 -0.10468 0.45947 1.93990 2.12215 2.60061 3.01908 3.03124 3.26147 3.33469 3.36117 3.52392 3.69255 3.94804 4.16993 4.30868 4.36207 4.41497 4.70959 4.83738 4.92654 5.03766 5.18006 5.20020 5.42065 5.59799 5.64358 5.95369 6.19745 6.33834 6.45569 6.63875 6.70185 6.94248 7.02804 7.10299 7.31845 7.48686 7.71231 7.94973 8.02320 8.19509 8.49969 8.91046 9.49303 10.94918 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.002672 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.562668 B =10475.405298 C =10945.841314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.211 3.789 4 H 0.036 0.964 5 C -0.552 4.552 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.073 3.927 15 C -0.586 4.586 16 S 2.494 3.506 17 O -0.925 6.925 18 O -0.908 6.908 19 C -0.402 4.402 20 C -0.087 4.087 21 C -0.040 4.040 22 C -0.033 4.033 23 C 0.250 3.750 24 N -0.390 5.390 25 C 0.133 3.867 26 N -0.387 5.387 27 H 0.025 0.975 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.031 0.969 31 H 0.092 0.908 32 H 0.263 0.737 33 H 0.333 0.667 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.170 0.830 39 H 0.158 0.842 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 10.869 -13.313 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.145 4.145 3 C 0.104 3.896 4 H 0.054 0.946 5 C -0.591 4.591 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.059 4.059 15 C -0.719 4.719 16 S 2.669 3.331 17 O -0.922 6.922 18 O -0.905 6.905 19 C -0.619 4.619 20 C -0.107 4.107 21 C -0.069 4.069 22 C -0.038 4.038 23 C -0.066 4.066 24 N -0.065 5.065 25 C -0.031 4.031 26 N -0.095 5.095 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.188 0.812 39 H 0.175 0.825 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.246 11.738 -13.739 20.773 hybrid contribution 0.924 -0.141 -0.522 1.071 sum -9.321 11.597 -14.261 20.610 Atomic orbital electron populations 1.21731 0.98964 0.98578 1.00462 1.21499 0.92140 0.98935 1.01883 1.19236 0.93230 0.91460 0.85690 0.94580 1.21843 0.92519 1.38833 1.05878 0.92585 1.24924 0.98126 0.94778 0.95610 1.69865 1.34972 1.37936 1.09337 0.86633 0.85765 0.77643 0.78210 1.20568 1.21147 1.19917 1.60945 1.55246 1.03945 1.10810 1.21496 1.00026 0.92734 0.91641 1.30287 1.12146 1.19785 1.09636 1.06210 0.75018 0.78874 0.73021 1.93611 1.59114 1.83211 1.56237 1.93608 1.38308 1.74888 1.83711 1.33960 0.99179 1.08770 1.20019 1.22090 0.95417 0.95106 0.98121 1.21822 1.00710 0.93007 0.91368 1.17272 0.95715 1.02036 0.88796 1.25296 0.94313 0.94338 0.92690 1.81318 1.06902 1.07613 1.10623 1.23340 0.92288 0.92969 0.94516 1.67953 1.36582 1.05736 0.99228 0.95553 0.94357 0.93230 0.94988 0.88949 0.92743 0.85104 0.90145 0.93179 0.84491 0.84049 0.81242 0.82465 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.83 37.16 0.37 -2.32 16 2 C -0.11 -2.39 5.45 -26.73 -0.15 -2.54 16 3 C 0.21 4.90 1.97 -68.87 -0.14 4.76 16 4 H 0.04 0.92 7.70 -51.93 -0.40 0.52 16 5 C -0.55 -14.18 8.47 -34.44 -0.29 -14.47 16 6 H 0.06 1.42 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.12 11.29 55.43 0.63 -23.50 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.68 -12.68 5.63 -107.95 -0.61 -13.29 16 14 C 0.07 1.18 5.52 -3.82 -0.02 1.16 16 15 C -0.59 -6.46 6.28 37.15 0.23 -6.23 16 16 S 2.49 29.36 5.22 -107.50 -0.56 28.79 16 17 O -0.93 -12.41 17.09 -57.54 -0.98 -13.39 16 18 O -0.91 -14.18 17.72 -57.54 -1.02 -15.20 16 19 C -0.40 -3.84 6.53 -17.47 -0.11 -3.95 16 20 C -0.09 -0.59 9.49 -39.50 -0.37 -0.97 16 21 C -0.04 -0.21 9.91 -38.86 -0.39 -0.60 16 22 C -0.03 -0.21 5.75 -106.78 -0.61 -0.82 16 23 C 0.25 1.83 15.37 -22.48 -0.35 1.48 16 24 N -0.39 -3.77 18.54 41.83 0.78 -2.99 16 25 C 0.13 0.95 10.92 -17.11 -0.19 0.77 16 26 N -0.39 -3.89 10.01 -12.09 -0.12 -4.01 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.89 7.68 -51.93 -0.40 0.49 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 33 H 0.33 6.01 8.46 -39.29 -0.33 5.68 16 34 H 0.08 1.30 7.92 -51.93 -0.41 0.89 16 35 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.14 1.29 8.14 -51.92 -0.42 0.87 16 37 H 0.14 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.17 0.81 7.55 -52.48 -0.40 0.41 16 39 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -33.38 363.39 -8.71 -42.09 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.17 Total: 2.42 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -2.11 Total: -21.99 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.67 Total: -43.79 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -2.00 Total: -28.59 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 29.36 SS G_CDS: -0.56 Total: 28.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.38 -8.71 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564665981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.238 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds