Wall clock time and date at job start Tue Mar 31 2020 14:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47201 * 2 1 4 4 H 1.08997 * 109.47210 * 54.88686 * 3 2 1 5 5 C 1.50711 * 109.46906 * 174.88326 * 3 2 1 6 6 H 1.08000 * 119.99515 * 120.00454 * 5 3 2 7 7 C 1.37868 * 120.00046 * 300.00192 * 5 3 2 8 8 N 1.31511 * 120.00278 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99775 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47472 * 90.00087 * 9 7 5 11 11 H 1.48507 * 109.46803 * 210.00018 * 9 7 5 12 12 H 1.48494 * 109.46959 * 329.99416 * 9 7 5 13 13 N 1.46895 * 109.47228 * 294.88166 * 3 2 1 14 14 C 1.46908 * 111.00163 * 154.15489 * 13 3 2 15 15 C 1.52991 * 109.47585 * 185.50527 * 14 13 3 16 16 S 1.81395 * 109.47473 * 180.02562 * 15 14 13 17 17 O 1.42094 * 110.54462 * 291.62718 * 16 15 14 18 18 O 1.42100 * 110.54127 * 68.37563 * 16 15 14 19 19 C 1.76199 * 104.45072 * 179.97438 * 16 15 14 20 20 C 1.38356 * 119.45306 * 90.00066 * 19 16 15 21 21 C 1.38339 * 119.31450 * 180.02562 * 20 19 16 22 22 C 1.40072 * 118.28442 * 359.97438 * 21 20 19 23 23 C 1.43200 * 120.56842 * 180.02562 * 22 21 20 24 24 N 9.96380 * 125.06166 * 159.23977 * 13 1 2 25 25 C 1.39589 * 118.86545 * 359.97438 * 22 21 20 26 26 N 1.31696 * 120.55783 * 359.72924 * 25 22 21 27 27 H 1.08995 * 109.47510 * 177.28942 * 1 2 3 28 28 H 1.08991 * 109.47227 * 297.29067 * 1 2 3 29 29 H 1.09006 * 109.47123 * 57.28962 * 1 2 3 30 30 H 1.09004 * 109.46924 * 239.99644 * 2 1 3 31 31 H 1.08998 * 109.46835 * 120.00224 * 2 1 3 32 32 H 0.97000 * 120.00490 * 179.97438 * 8 7 5 33 33 H 1.00898 * 111.00513 * 278.10825 * 13 3 2 34 34 H 1.09003 * 109.46672 * 305.51016 * 14 13 3 35 35 H 1.09005 * 109.46893 * 65.50436 * 14 13 3 36 36 H 1.09009 * 109.47325 * 300.00664 * 15 14 13 37 37 H 1.09005 * 109.47080 * 60.00023 * 15 14 13 38 38 H 1.08010 * 120.34320 * 359.97438 * 20 19 16 39 39 H 1.07996 * 120.86072 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.72043 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6038 1.9820 0.8406 5 6 3.5418 1.4442 0.1267 6 1 4.1485 1.8883 -0.6486 7 6 4.1410 0.8790 1.2323 8 7 3.4021 0.3388 2.1766 9 14 6.0023 0.8820 1.3896 10 1 6.4378 2.1153 2.0928 11 1 6.4354 -0.3087 2.1644 12 1 6.6135 0.8413 0.0369 13 7 1.6539 2.0983 -1.2564 14 6 1.5552 3.5537 -1.0819 15 6 1.0203 4.1865 -2.3679 16 16 0.8992 5.9836 -2.1527 17 8 -0.1207 6.3062 -1.2174 18 8 2.1933 6.5622 -2.0540 19 6 0.2780 6.5701 -3.6937 20 6 -1.0889 6.6720 -3.8818 21 6 -1.5735 7.1323 -5.0930 22 6 -0.6510 7.4801 -6.0880 23 6 -1.0987 7.9626 -7.3597 24 7 -1.4572 8.3465 -8.3669 25 6 0.7124 7.3493 -5.8183 26 7 1.1241 6.9114 -4.6465 27 1 -0.3634 -1.0264 -0.0486 28 1 -0.3633 0.4711 0.9132 29 1 -0.3634 0.5554 -0.8647 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8236 -0.0592 2.9543 33 1 2.2970 1.8659 -1.9982 34 1 0.8767 3.7756 -0.2581 35 1 2.5417 3.9606 -0.8597 36 1 1.6987 3.9645 -3.1917 37 1 0.0337 3.7796 -2.5901 38 1 -1.7706 6.3941 -3.0915 39 1 -2.6356 7.2221 -5.2667 40 1 1.4357 7.6131 -6.5757 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564665981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:24 Heat of formation + Delta-G solvation = -27.781097 kcal Electronic energy + Delta-G solvation = -23972.305755 eV Core-core repulsion = 20299.793260 eV Total energy + Delta-G solvation = -3672.512496 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48911 -38.22442 -38.22010 -37.92082 -37.06076 -35.04303 -33.99032 -33.35431 -33.00534 -30.79918 -27.92449 -26.46945 -25.07789 -24.77177 -23.27753 -21.43593 -20.53689 -20.28524 -18.98726 -18.75026 -18.16902 -17.39396 -16.83100 -16.64317 -16.09834 -15.90875 -15.73131 -15.51318 -15.31426 -14.94691 -14.69559 -14.48605 -14.46912 -14.24671 -13.96965 -13.68577 -13.33158 -13.23882 -13.12162 -13.11113 -13.04523 -12.90665 -12.60419 -12.45529 -12.34796 -12.09504 -11.81996 -11.46612 -11.30097 -11.20816 -10.99725 -10.82745 -10.67434 -10.43845 -9.13896 -8.04898 -6.26149 -1.23291 -0.93916 -0.02460 1.36690 1.40472 1.43160 1.51022 1.51428 1.76472 2.41743 2.43214 2.44874 2.80947 2.85942 3.16378 3.49246 3.52458 3.57637 3.74280 3.84197 3.90908 4.08263 4.37969 4.52731 4.56369 4.63808 4.72462 4.76616 4.83465 4.98057 4.99265 5.16732 5.21683 5.48743 5.54893 5.65986 5.80690 6.11530 6.13735 6.20549 6.34499 6.37108 6.78197 7.01074 7.45474 8.92243 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.020044 B = 0.002672 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.562668 B =10475.405298 C =10945.841314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C 0.214 3.786 4 H 0.006 0.994 5 C -0.564 4.564 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 0.946 3.054 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.666 5.666 14 C 0.062 3.938 15 C -0.573 4.573 16 S 2.507 3.493 17 O -0.948 6.948 18 O -0.958 6.958 19 C -0.412 4.412 20 C -0.083 4.083 21 C -0.023 4.023 22 C -0.026 4.026 23 C 0.279 3.721 24 N -0.430 5.430 25 C 0.133 3.867 26 N -0.421 5.421 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.262 0.738 33 H 0.338 0.662 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.157 0.843 37 H 0.175 0.825 38 H 0.192 0.808 39 H 0.195 0.805 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 11.143 -15.288 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 C 0.106 3.894 4 H 0.024 0.976 5 C -0.603 4.603 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.772 3.228 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.296 5.296 14 C -0.069 4.069 15 C -0.705 4.705 16 S 2.687 3.313 17 O -0.944 6.944 18 O -0.955 6.955 19 C -0.632 4.632 20 C -0.103 4.103 21 C -0.052 4.052 22 C -0.032 4.032 23 C -0.037 4.037 24 N -0.105 5.105 25 C -0.032 4.032 26 N -0.129 5.129 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.209 0.791 39 H 0.212 0.788 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.673 12.004 -15.676 22.937 hybrid contribution 1.317 -0.167 0.011 1.327 sum -10.357 11.837 -15.665 22.199 Atomic orbital electron populations 1.21607 0.96211 1.00016 1.00801 1.21354 0.94597 0.97973 1.00238 1.19033 0.91729 0.92006 0.86675 0.97642 1.22218 0.94151 1.38194 1.05711 0.92778 1.25627 1.01865 0.94827 0.95618 1.69990 1.36316 1.38721 1.09721 0.85751 0.81396 0.77436 0.78240 1.20653 1.20854 1.19320 1.60844 1.54695 1.05268 1.08831 1.21545 0.99411 0.91426 0.94554 1.30132 1.14276 1.18822 1.07293 1.05349 0.73737 0.78702 0.73494 1.93574 1.59192 1.83593 1.58071 1.93547 1.40792 1.75995 1.85148 1.33187 1.00341 1.10828 1.18843 1.22380 0.94340 0.94340 0.99268 1.22228 1.02326 0.90685 0.89947 1.17259 0.95626 1.01762 0.88510 1.25214 0.93122 0.93165 0.92228 1.81364 1.08308 1.09030 1.11811 1.23671 0.93342 0.92216 0.93967 1.67882 1.37457 1.07325 1.00270 0.93689 0.95078 0.91611 0.94968 0.92176 0.92865 0.84516 0.90595 0.95172 0.82535 0.80705 0.79114 0.78815 0.78356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.83 71.98 0.71 -4.08 16 2 C -0.10 -4.65 5.45 30.59 0.17 -4.49 16 3 C 0.21 10.08 1.97 44.17 0.09 10.17 16 4 H 0.01 0.30 7.70 -2.39 -0.02 0.28 16 5 C -0.56 -29.42 8.47 25.60 0.22 -29.21 16 6 H 0.05 2.77 7.73 -2.91 -0.02 2.75 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -50.80 11.29 21.44 0.24 -50.56 16 9 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.67 -24.50 5.63 -495.45 -2.79 -27.29 16 14 C 0.06 2.01 5.52 86.30 0.48 2.49 16 15 C -0.57 -11.73 6.28 71.98 0.45 -11.28 16 16 S 2.51 57.79 5.22 -56.49 -0.29 57.50 16 17 O -0.95 -24.91 17.09 -127.65 -2.18 -27.10 16 18 O -0.96 -30.76 17.72 -127.65 -2.26 -33.02 16 19 C -0.41 -7.10 6.53 84.71 0.55 -6.55 16 20 C -0.08 -0.85 9.49 22.32 0.21 -0.64 16 21 C -0.02 -0.15 9.91 22.74 0.23 0.08 16 22 C -0.03 -0.24 5.75 -21.26 -0.12 -0.37 16 23 C 0.28 3.32 15.37 88.33 1.36 4.67 16 24 N -0.43 -7.48 18.54 19.00 0.35 -7.13 16 25 C 0.13 1.60 10.92 85.04 0.93 2.52 16 26 N -0.42 -7.79 10.01 -192.18 -1.92 -9.72 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 2.21 7.68 -2.38 -0.02 2.19 16 30 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 3.12 5.95 -2.39 -0.01 3.11 16 32 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.34 11.89 8.46 -89.70 -0.76 11.13 16 34 H 0.08 2.49 7.92 -2.39 -0.02 2.47 16 35 H 0.03 1.09 8.12 -2.38 -0.02 1.07 16 36 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.18 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.19 1.11 7.55 -2.91 -0.02 1.09 16 39 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 40 H 0.20 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -74.28 363.39 -0.81 -75.08 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.31 Total: 12.56 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 5.71 Total: -35.10 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -4.12 Total: -94.69 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -4.44 Total: -60.12 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 57.79 SS G_CDS: -0.29 Total: 57.50 kcal Total: -74.28 -0.81 -75.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564665981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.302 kcal (2) G-P(sol) polarization free energy of solvation -74.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds