Wall clock time and date at job start Tue Mar 31 2020 14:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47091 * 2 1 4 4 H 1.08999 * 109.46964 * 185.15796 * 3 2 1 5 5 C 1.50702 * 109.47420 * 305.15844 * 3 2 1 6 6 H 1.07995 * 119.99691 * 119.99658 * 5 3 2 7 7 C 1.37876 * 120.00063 * 300.00395 * 5 3 2 8 8 N 1.31513 * 119.99716 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99941 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.46830 * 59.99806 * 9 7 5 11 11 H 1.48501 * 109.46880 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47138 * 299.99968 * 9 7 5 13 13 N 1.46906 * 109.46930 * 65.16093 * 3 2 1 14 14 C 1.46903 * 110.99620 * 86.00588 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.48880 * 14 13 3 16 16 N 1.28511 * 118.14983 * 359.72991 * 15 14 13 17 17 C 1.36161 * 127.55505 * 182.28439 * 16 15 14 18 18 C 1.39763 * 120.56174 * 194.05634 * 17 16 15 19 19 C 1.37897 * 119.90972 * 179.17405 * 18 17 16 20 20 C 1.38363 * 120.66001 * 0.02562 * 19 18 17 21 21 C 1.38647 * 119.97959 * 0.20948 * 20 19 18 22 22 C 1.37096 * 119.62450 * 359.90810 * 21 20 19 23 23 S 1.76947 * 121.46861 * 179.73638 * 22 21 20 24 24 O 1.42101 * 106.99479 * 44.61132 * 23 22 21 25 25 O 1.42099 * 106.99386 * 270.10206 * 23 22 21 26 26 N 1.37408 * 118.14557 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.46765 * 54.84992 * 1 2 3 28 28 H 1.09000 * 109.46891 * 294.85480 * 1 2 3 29 29 H 1.08993 * 109.46971 * 174.84922 * 1 2 3 30 30 H 1.08995 * 109.47153 * 119.99945 * 2 1 3 31 31 H 1.09004 * 109.47316 * 240.00349 * 2 1 3 32 32 H 0.97004 * 119.99298 * 180.02562 * 8 7 5 33 33 H 1.00893 * 110.99801 * 322.05320 * 13 3 2 34 34 H 1.08994 * 109.46864 * 294.48045 * 14 13 3 35 35 H 1.08994 * 109.47486 * 54.48732 * 14 13 3 36 36 H 1.07995 * 120.04514 * 359.19139 * 18 17 16 37 37 H 1.08002 * 119.66789 * 180.02562 * 19 18 17 38 38 H 1.07992 * 120.00865 * 180.20403 * 20 19 18 39 39 H 1.08003 * 120.18599 * 179.91453 * 21 20 19 40 40 H 0.97007 * 121.78011 * 329.75895 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1889 -1.1616 6 1 0.8270 3.0628 -0.9839 7 6 1.6612 1.7560 -2.4512 8 7 2.4033 0.6921 -2.6675 9 14 0.9120 2.6808 -3.8909 10 1 1.4066 4.0811 -3.8910 11 1 1.3021 2.0185 -5.1615 12 1 -0.5676 2.6784 -3.7648 13 7 1.6547 2.0981 1.2569 14 6 2.6446 1.8387 2.3109 15 6 2.2887 2.6337 3.5408 16 7 1.2442 3.3811 3.4984 17 6 0.7739 4.2061 4.4741 18 6 -0.5196 4.7303 4.3991 19 6 -0.9882 5.5510 5.4033 20 6 -0.1898 5.8637 6.4892 21 6 1.0968 5.3539 6.5728 22 6 1.5691 4.5394 5.5763 23 16 3.2052 3.8677 5.6299 24 8 3.4171 3.3953 6.9533 25 8 4.0580 4.7986 4.9777 26 7 3.1030 2.5231 4.6420 27 1 -0.3633 0.5917 -0.8403 28 1 -0.3633 0.4320 0.9325 29 1 -0.3633 -1.0235 -0.0923 30 1 1.8933 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.5619 0.3878 -3.5748 33 1 0.7328 1.8091 1.5476 34 1 2.6470 0.7760 2.5534 35 1 3.6337 2.1339 1.9610 36 1 -1.1512 4.4928 3.5559 37 1 -1.9885 5.9536 5.3416 38 1 -0.5687 6.5048 7.2713 39 1 1.7234 5.5970 7.4182 40 1 3.5924 1.7083 4.8359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:15 Heat of formation + Delta-G solvation = -10.068069 kcal Electronic energy + Delta-G solvation = -25154.582285 eV Core-core repulsion = 21482.837884 eV Total energy + Delta-G solvation = -3671.744401 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19093 -38.34137 -37.50678 -36.33128 -36.21516 -33.66304 -32.69444 -31.52287 -30.93038 -29.45396 -27.14464 -25.25424 -23.87004 -23.25894 -22.76553 -20.83460 -19.55359 -19.43686 -18.93968 -18.06354 -17.07096 -16.27126 -16.08228 -15.58324 -15.28449 -15.01943 -14.73910 -14.55091 -14.29202 -13.71503 -13.39036 -13.15822 -12.86209 -12.73599 -12.50033 -12.44810 -12.39028 -12.10236 -11.96566 -11.95391 -11.61863 -10.99799 -10.89312 -10.78666 -10.66392 -10.54429 -10.04529 -9.90805 -9.77602 -9.64119 -9.60463 -9.03297 -8.34612 -8.28231 -7.27666 -5.98378 -3.98993 -0.14282 0.27427 0.87435 2.22037 2.31167 3.04784 3.35832 3.40016 3.43979 3.50231 3.73995 4.28017 4.39411 4.46043 4.58975 4.75833 4.89542 4.95197 5.20240 5.26287 5.34033 5.48780 5.65570 5.71271 5.84467 5.89294 5.95109 6.15608 6.30181 6.33657 6.42015 6.52732 6.58153 6.83859 7.17347 7.21950 7.49027 7.65491 7.86092 7.99368 8.24450 8.50793 8.57083 9.06983 9.64583 11.08842 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.003508 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.356245 B = 7979.948626 C = 8651.180377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.147 4.147 3 C 0.214 3.786 4 H 0.035 0.965 5 C -0.486 4.486 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.662 5.662 14 C 0.098 3.902 15 C 0.450 3.550 16 N -0.523 5.523 17 C 0.213 3.787 18 C -0.110 4.110 19 C -0.057 4.057 20 C -0.152 4.152 21 C -0.005 4.005 22 C -0.714 4.714 23 S 2.671 3.329 24 O -0.943 6.943 25 O -0.931 6.931 26 N -1.061 6.061 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.259 0.741 33 H 0.339 0.661 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 3.749 17.946 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.107 3.893 4 H 0.053 0.947 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.294 5.294 14 C -0.035 4.035 15 C 0.179 3.821 16 N -0.241 5.241 17 C 0.107 3.893 18 C -0.130 4.130 19 C -0.075 4.075 20 C -0.172 4.172 21 C -0.025 4.025 22 C -0.806 4.806 23 S 2.763 3.237 24 O -0.933 6.933 25 O -0.920 6.920 26 N -0.817 5.817 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.159 0.841 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -2.409 4.874 17.574 18.396 hybrid contribution -0.628 -0.802 0.027 1.019 sum -3.036 4.071 17.601 18.319 Atomic orbital electron populations 1.21603 0.97584 0.98701 1.00947 1.22144 0.95167 1.01018 1.00310 1.19304 0.96177 0.88572 0.85274 0.94695 1.20998 1.30540 1.11522 0.89414 0.91809 1.24892 0.95554 0.95162 0.98716 1.69862 1.39028 1.24021 1.20823 0.86616 0.79534 0.80024 0.81535 1.20340 1.21608 1.20401 1.60627 1.03450 1.63235 1.02133 1.21153 0.99721 0.95126 0.87549 1.22967 0.81189 0.90823 0.87084 1.66713 1.13137 1.12953 1.31303 1.18073 0.94049 0.91519 0.85635 1.21145 0.94377 0.97666 0.99838 1.21335 0.99592 0.94092 0.92530 1.21300 0.94185 1.02225 0.99443 1.20341 0.95868 0.91543 0.94778 1.30803 1.25263 1.19163 1.05383 1.02823 0.74337 0.73311 0.73198 1.93648 1.85218 1.79805 1.34619 1.93718 1.62928 1.60101 1.75289 1.54421 1.56600 1.33385 1.37291 0.91101 0.95316 0.95817 0.97141 0.88741 0.93076 0.84118 0.92659 0.87417 0.83752 0.84772 0.84911 0.84920 0.72362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.40 37.16 0.35 -2.27 16 2 C -0.15 -3.15 5.51 -26.73 -0.15 -3.30 16 3 C 0.21 4.87 2.33 -68.86 -0.16 4.71 16 4 H 0.04 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.49 -12.55 7.25 -34.44 -0.25 -12.80 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.51 5.28 -17.82 -0.09 1.41 16 8 N -0.90 -24.33 11.38 55.43 0.63 -23.70 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 N -0.66 -12.77 5.64 -109.21 -0.62 -13.39 16 14 C 0.10 1.49 6.03 -4.97 -0.03 1.46 16 15 C 0.45 6.38 7.48 -154.83 -1.16 5.23 16 16 N -0.52 -8.25 8.79 -8.26 -0.07 -8.33 16 17 C 0.21 3.12 6.61 -84.74 -0.56 2.56 16 18 C -0.11 -1.39 10.00 -39.14 -0.39 -1.78 16 19 C -0.06 -0.56 10.00 -39.66 -0.40 -0.96 16 20 C -0.15 -1.46 10.07 -39.38 -0.40 -1.85 16 21 C -0.01 -0.06 9.74 -39.85 -0.39 -0.45 16 22 C -0.71 -9.62 5.91 -39.36 -0.23 -9.86 16 23 S 2.67 34.76 5.98 -107.50 -0.64 34.12 16 24 O -0.94 -13.01 17.98 -57.07 -1.03 -14.04 16 25 O -0.93 -15.08 18.06 -57.07 -1.03 -16.11 16 26 N -1.06 -11.92 6.03 32.78 0.20 -11.73 16 27 H 0.07 1.58 6.85 -51.93 -0.36 1.23 16 28 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.19 7.51 -51.93 -0.39 -0.20 16 31 H 0.09 2.32 6.23 -51.93 -0.32 2.00 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.34 6.38 6.44 -39.30 -0.25 6.12 16 34 H 0.06 0.73 7.55 -51.93 -0.39 0.34 16 35 H 0.11 1.61 7.92 -51.93 -0.41 1.20 16 36 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 40 H 0.44 3.27 8.96 -37.55 -0.34 2.93 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -32.46 342.63 -11.14 -43.60 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.86 Total: 6.42 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -3.86 Total: -17.89 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.14 Total: -57.14 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -2.06 Total: -30.15 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 34.76 SS G_CDS: -0.64 Total: 34.12 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.46 -11.14 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.532 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds