Wall clock time and date at job start Tue Mar 31 2020 14:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47091 * 2 1 4 4 H 1.08999 * 109.46964 * 185.15796 * 3 2 1 5 5 C 1.50702 * 109.47420 * 305.15844 * 3 2 1 6 6 H 1.07995 * 119.99691 * 119.99658 * 5 3 2 7 7 C 1.37876 * 120.00063 * 300.00395 * 5 3 2 8 8 N 1.31513 * 119.99716 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99941 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.46830 * 59.99806 * 9 7 5 11 11 H 1.48501 * 109.46880 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47138 * 299.99968 * 9 7 5 13 13 N 1.46906 * 109.46930 * 65.16093 * 3 2 1 14 14 C 1.46903 * 110.99620 * 86.00588 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.48880 * 14 13 3 16 16 N 1.28511 * 118.14983 * 359.72991 * 15 14 13 17 17 C 1.36161 * 127.55505 * 182.28439 * 16 15 14 18 18 C 1.39763 * 120.56174 * 194.05634 * 17 16 15 19 19 C 1.37897 * 119.90972 * 179.17405 * 18 17 16 20 20 C 1.38363 * 120.66001 * 0.02562 * 19 18 17 21 21 C 1.38647 * 119.97959 * 0.20948 * 20 19 18 22 22 C 1.37096 * 119.62450 * 359.90810 * 21 20 19 23 23 S 1.76947 * 121.46861 * 179.73638 * 22 21 20 24 24 O 1.42101 * 106.99479 * 44.61132 * 23 22 21 25 25 O 1.42099 * 106.99386 * 270.10206 * 23 22 21 26 26 N 1.37408 * 118.14557 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.46765 * 54.84992 * 1 2 3 28 28 H 1.09000 * 109.46891 * 294.85480 * 1 2 3 29 29 H 1.08993 * 109.46971 * 174.84922 * 1 2 3 30 30 H 1.08995 * 109.47153 * 119.99945 * 2 1 3 31 31 H 1.09004 * 109.47316 * 240.00349 * 2 1 3 32 32 H 0.97004 * 119.99298 * 180.02562 * 8 7 5 33 33 H 1.00893 * 110.99801 * 322.05320 * 13 3 2 34 34 H 1.08994 * 109.46864 * 294.48045 * 14 13 3 35 35 H 1.08994 * 109.47486 * 54.48732 * 14 13 3 36 36 H 1.07995 * 120.04514 * 359.19139 * 18 17 16 37 37 H 1.08002 * 119.66789 * 180.02562 * 19 18 17 38 38 H 1.07992 * 120.00865 * 180.20403 * 20 19 18 39 39 H 1.08003 * 120.18599 * 179.91453 * 21 20 19 40 40 H 0.97007 * 121.78011 * 329.75895 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1889 -1.1616 6 1 0.8270 3.0628 -0.9839 7 6 1.6612 1.7560 -2.4512 8 7 2.4033 0.6921 -2.6675 9 14 0.9120 2.6808 -3.8909 10 1 1.4066 4.0811 -3.8910 11 1 1.3021 2.0185 -5.1615 12 1 -0.5676 2.6784 -3.7648 13 7 1.6547 2.0981 1.2569 14 6 2.6446 1.8387 2.3109 15 6 2.2887 2.6337 3.5408 16 7 1.2442 3.3811 3.4984 17 6 0.7739 4.2061 4.4741 18 6 -0.5196 4.7303 4.3991 19 6 -0.9882 5.5510 5.4033 20 6 -0.1898 5.8637 6.4892 21 6 1.0968 5.3539 6.5728 22 6 1.5691 4.5394 5.5763 23 16 3.2052 3.8677 5.6299 24 8 3.4171 3.3953 6.9533 25 8 4.0580 4.7986 4.9777 26 7 3.1030 2.5231 4.6420 27 1 -0.3633 0.5917 -0.8403 28 1 -0.3633 0.4320 0.9325 29 1 -0.3633 -1.0235 -0.0923 30 1 1.8933 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.5619 0.3878 -3.5748 33 1 0.7328 1.8091 1.5476 34 1 2.6470 0.7760 2.5534 35 1 3.6337 2.1339 1.9610 36 1 -1.1512 4.4928 3.5559 37 1 -1.9885 5.9536 5.3416 38 1 -0.5687 6.5048 7.2713 39 1 1.7234 5.5970 7.4182 40 1 3.5924 1.7083 4.8359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568181286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:15 Heat of formation + Delta-G solvation = -33.929525 kcal Electronic energy + Delta-G solvation = -25155.616996 eV Core-core repulsion = 21482.837884 eV Total energy + Delta-G solvation = -3672.779112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17111 -39.35605 -38.62758 -37.87653 -37.35591 -34.64045 -34.42009 -32.55970 -32.38803 -30.56701 -28.70605 -26.82704 -25.02018 -24.78679 -23.73620 -21.96162 -21.06267 -20.50970 -20.00761 -19.15157 -18.15783 -17.92547 -17.16620 -16.72732 -16.49447 -16.42653 -16.17868 -15.68671 -15.31864 -15.07097 -14.70772 -14.53607 -14.19155 -14.07603 -13.72063 -13.61336 -13.53261 -13.52632 -13.26597 -12.98274 -12.81431 -12.74693 -12.57622 -12.36708 -11.95577 -11.81870 -11.69547 -11.56813 -11.33713 -10.96520 -10.83103 -10.51488 -10.34689 -9.24310 -8.81211 -7.99096 -6.04875 -1.15608 -0.68299 -0.00472 1.21503 1.35398 1.47823 1.49049 1.55776 2.05056 2.51160 2.58576 2.71640 3.23171 3.30751 3.45828 3.63650 3.74741 4.05912 4.10242 4.18478 4.37416 4.45909 4.50556 4.63664 4.68055 4.71183 4.84566 4.87519 4.99259 5.14317 5.18883 5.33207 5.41930 5.50972 5.62025 5.77211 5.79581 5.84110 5.92021 6.40132 6.72610 6.88769 7.02601 7.08121 7.62222 9.05730 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.003508 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.356245 B = 7979.948626 C = 8651.180377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.140 4.140 3 C 0.220 3.780 4 H 0.010 0.990 5 C -0.495 4.495 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.097 3.903 15 C 0.446 3.554 16 N -0.546 5.546 17 C 0.178 3.822 18 C -0.126 4.126 19 C -0.050 4.050 20 C -0.141 4.141 21 C -0.021 4.021 22 C -0.727 4.727 23 S 2.691 3.309 24 O -0.952 6.952 25 O -0.968 6.968 26 N -1.046 6.046 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.257 0.743 33 H 0.342 0.658 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.144 0.856 37 H 0.171 0.829 38 H 0.173 0.827 39 H 0.155 0.845 40 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 4.379 19.910 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.179 4.179 3 C 0.112 3.888 4 H 0.028 0.972 5 C -0.534 4.534 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.304 5.304 14 C -0.036 4.036 15 C 0.175 3.825 16 N -0.264 5.264 17 C 0.073 3.927 18 C -0.146 4.146 19 C -0.068 4.068 20 C -0.160 4.160 21 C -0.040 4.040 22 C -0.820 4.820 23 S 2.785 3.215 24 O -0.941 6.941 25 O -0.957 6.957 26 N -0.805 5.805 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.162 0.838 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.162 0.838 37 H 0.188 0.812 38 H 0.190 0.810 39 H 0.172 0.828 40 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -3.810 5.494 19.566 20.676 hybrid contribution -0.261 -0.920 -0.469 1.065 sum -4.070 4.574 19.097 20.054 Atomic orbital electron populations 1.21487 0.96385 0.99383 1.00748 1.21983 0.96163 0.99856 0.99930 1.19034 0.94293 0.89321 0.86152 0.97236 1.21242 1.30102 1.11180 0.90840 0.93258 1.25471 0.96082 0.95874 1.00701 1.69978 1.40029 1.24996 1.20918 0.85829 0.79053 0.78748 0.79226 1.20599 1.21416 1.19874 1.60399 1.04464 1.63278 1.02232 1.21168 0.98491 0.96990 0.86930 1.22585 0.81711 0.90909 0.87331 1.66604 1.13938 1.13352 1.32553 1.18310 0.95287 0.92812 0.86323 1.21395 0.93874 0.98414 1.00886 1.21789 1.01114 0.92508 0.91383 1.21822 0.93117 1.01159 0.99885 1.20839 0.97226 0.91081 0.94892 1.30775 1.24827 1.20362 1.06066 1.02017 0.73974 0.72878 0.72629 1.93629 1.85569 1.79919 1.35005 1.93674 1.64582 1.61491 1.75994 1.54078 1.56391 1.33780 1.36219 0.93926 0.93323 0.94141 0.94574 0.91932 0.93340 0.83799 0.89960 0.87538 0.83845 0.81157 0.80970 0.82761 0.70433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.40 71.98 0.68 -4.12 16 2 C -0.14 -5.95 5.51 30.60 0.17 -5.78 16 3 C 0.22 10.14 2.33 44.17 0.10 10.24 16 4 H 0.01 0.49 7.70 -2.39 -0.02 0.47 16 5 C -0.49 -26.01 7.25 25.60 0.19 -25.82 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.02 0.90 5.28 84.65 0.45 1.35 16 8 N -0.92 -50.69 11.38 21.45 0.24 -50.45 16 9 Si 0.94 43.33 29.54 68.60 2.03 45.36 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 N -0.67 -25.89 5.64 -499.44 -2.82 -28.71 16 14 C 0.10 2.91 6.03 85.56 0.52 3.42 16 15 C 0.45 12.48 7.48 137.92 1.03 13.51 16 16 N -0.55 -17.16 8.79 -180.05 -1.58 -18.74 16 17 C 0.18 5.10 6.61 39.25 0.26 5.36 16 18 C -0.13 -3.00 10.00 22.56 0.23 -2.77 16 19 C -0.05 -0.82 10.00 22.22 0.22 -0.60 16 20 C -0.14 -2.17 10.07 22.40 0.23 -1.95 16 21 C -0.02 -0.42 9.74 22.10 0.22 -0.20 16 22 C -0.73 -18.87 5.91 22.41 0.13 -18.74 16 23 S 2.69 68.72 5.98 -56.49 -0.34 68.38 16 24 O -0.95 -25.28 17.98 -128.10 -2.30 -27.58 16 25 O -0.97 -31.55 18.06 -128.10 -2.31 -33.86 16 26 N -1.05 -22.83 6.03 -50.22 -0.30 -23.13 16 27 H 0.04 1.89 6.85 -2.39 -0.02 1.88 16 28 H 0.05 1.68 6.63 -2.39 -0.02 1.66 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.32 7.51 -2.39 -0.02 1.31 16 31 H 0.06 3.10 6.23 -2.38 -0.01 3.08 16 32 H 0.26 13.78 8.31 -92.70 -0.77 13.01 16 33 H 0.34 12.70 6.44 -89.70 -0.58 12.12 16 34 H 0.08 2.02 7.55 -2.39 -0.02 2.00 16 35 H 0.11 3.19 7.92 -2.39 -0.02 3.17 16 36 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.45 6.29 8.96 -94.78 -0.85 5.44 16 Total: -1.00 -71.04 342.63 -3.31 -74.35 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.33 Total: 20.48 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 4.41 Total: -26.10 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -4.46 Total: -121.03 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -4.62 Total: -61.44 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 68.72 SS G_CDS: -0.34 Total: 68.38 kcal Total: -71.04 -3.31 -74.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.419 kcal (2) G-P(sol) polarization free energy of solvation -71.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds