Wall clock time and date at job start Tue Mar 31 2020 14:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47740 * 2 1 4 4 H 1.09003 * 109.47611 * 174.01208 * 3 2 1 5 5 C 1.50707 * 109.46724 * 54.01490 * 3 2 1 6 6 H 1.08005 * 119.99895 * 240.00537 * 5 3 2 7 7 C 1.37874 * 120.00401 * 59.99981 * 5 3 2 8 8 N 1.31514 * 119.99360 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00454 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46595 * 60.00101 * 9 7 5 11 11 H 1.48496 * 109.47397 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47178 * 300.00556 * 9 7 5 13 13 N 1.46896 * 109.47248 * 294.01647 * 3 2 1 14 14 C 1.46896 * 111.00145 * 275.18948 * 13 3 2 15 15 C 1.50698 * 109.47416 * 177.56579 * 14 13 3 16 16 N 1.28511 * 118.14395 * 359.73111 * 15 14 13 17 17 C 1.36172 * 127.54870 * 182.28705 * 16 15 14 18 18 C 1.39760 * 120.55921 * 194.05626 * 17 16 15 19 19 C 1.37891 * 119.90983 * 179.17370 * 18 17 16 20 20 C 1.38362 * 120.65905 * 0.02562 * 19 18 17 21 21 C 1.38644 * 119.98155 * 0.20217 * 20 19 18 22 22 C 1.37092 * 119.62366 * 359.91833 * 21 20 19 23 23 S 1.76949 * 121.46987 * 179.73095 * 22 21 20 24 24 O 1.42091 * 106.99319 * 44.60890 * 23 22 21 25 25 O 1.42100 * 106.98849 * 270.10014 * 23 22 21 26 26 N 1.37413 * 118.14754 * 179.97438 * 15 14 13 27 27 H 1.08997 * 109.47662 * 178.69122 * 1 2 3 28 28 H 1.09006 * 109.46748 * 58.69487 * 1 2 3 29 29 H 1.08996 * 109.47008 * 298.70011 * 1 2 3 30 30 H 1.09005 * 109.47160 * 120.00531 * 2 1 3 31 31 H 1.09007 * 109.46871 * 239.99920 * 2 1 3 32 32 H 0.97002 * 119.99878 * 180.02562 * 8 7 5 33 33 H 1.00903 * 111.00443 * 39.14578 * 13 3 2 34 34 H 1.09006 * 109.46730 * 297.56079 * 14 13 3 35 35 H 1.08996 * 109.47238 * 57.55542 * 14 13 3 36 36 H 1.08003 * 120.04474 * 359.19440 * 18 17 16 37 37 H 1.08007 * 119.67003 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.00789 * 180.20666 * 20 19 18 39 39 H 1.08002 * 120.18472 * 179.91261 * 21 20 19 40 40 H 0.97005 * 121.78379 * 329.76421 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1248 1.4442 0.1072 5 6 1.4205 2.1943 1.1498 6 1 0.8138 3.0674 0.9597 7 6 1.6279 1.7676 2.4443 8 7 2.3670 0.7047 2.6757 9 14 0.8605 2.7000 3.8695 10 1 -0.6174 2.6981 3.7236 11 1 1.2319 2.0429 5.1483 12 1 1.3560 4.0998 3.8693 13 7 1.6720 2.0920 -1.2650 14 6 2.6613 1.8042 -2.3121 15 6 2.2203 2.4359 -3.6072 16 7 1.1136 3.0890 -3.6172 17 6 0.5167 3.6942 -4.6810 18 6 -0.5244 4.6063 -4.4875 19 6 -1.1079 5.2243 -5.5733 20 6 -0.6737 4.9508 -6.8582 21 6 0.3551 4.0444 -7.0637 22 6 0.9375 3.4251 -5.9882 23 16 2.2489 2.2551 -6.1945 24 8 3.1530 2.8074 -7.1414 25 8 1.6461 0.9756 -6.3312 26 7 3.0218 2.2767 -4.7120 27 1 -0.3634 -1.0273 -0.0235 28 1 -0.3633 0.5340 -0.8781 29 1 -0.3633 0.4935 0.9014 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.5127 0.4042 3.5865 33 1 0.7461 1.8168 -1.5569 34 1 3.6288 2.2124 -2.0197 35 1 2.7470 0.7257 -2.4444 36 1 -0.8713 4.8271 -3.4888 37 1 -1.9120 5.9288 -5.4193 38 1 -1.1359 5.4434 -7.7009 39 1 0.6957 3.8275 -8.0654 40 1 3.9842 2.1815 -4.6357 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:18 Heat of formation + Delta-G solvation = -10.168913 kcal Electronic energy + Delta-G solvation = -25195.784513 eV Core-core repulsion = 21524.035739 eV Total energy + Delta-G solvation = -3671.748774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.22248 -38.36970 -37.54227 -36.33778 -36.23293 -33.68639 -32.69470 -31.54175 -30.91287 -29.45794 -27.14874 -25.24663 -23.89222 -23.24403 -22.78675 -20.85063 -19.59471 -19.41482 -18.91993 -18.06427 -17.11119 -16.41535 -16.04158 -15.60365 -15.35411 -15.07832 -14.74704 -14.35145 -14.20613 -13.85401 -13.35805 -13.15501 -12.86838 -12.70133 -12.52544 -12.48023 -12.42422 -12.34133 -12.05927 -11.79639 -11.55744 -11.00848 -10.91261 -10.80827 -10.67076 -10.52552 -10.04123 -9.89340 -9.82518 -9.65879 -9.55460 -9.02008 -8.35705 -8.31835 -7.27696 -5.98592 -3.99388 -0.17382 0.25483 0.85736 2.18947 2.27096 3.01713 3.34867 3.39275 3.42682 3.46219 3.72188 4.25359 4.38002 4.44756 4.57411 4.74752 4.87845 4.93672 5.18478 5.25313 5.33809 5.48268 5.64887 5.75882 5.83242 5.86874 5.93751 6.14352 6.33903 6.38363 6.40671 6.56026 6.56430 6.89423 7.18311 7.24950 7.50156 7.67282 7.85177 7.96011 8.24738 8.51323 8.57723 9.06264 9.64148 11.08709 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.018382 B = 0.003513 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.823417 B = 7967.843344 C = 8854.782770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.148 4.148 3 C 0.214 3.786 4 H 0.035 0.965 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.664 5.664 14 C 0.096 3.904 15 C 0.450 3.550 16 N -0.527 5.527 17 C 0.212 3.788 18 C -0.109 4.109 19 C -0.056 4.056 20 C -0.152 4.152 21 C -0.005 4.005 22 C -0.714 4.714 23 S 2.671 3.329 24 O -0.942 6.942 25 O -0.934 6.934 26 N -1.060 6.060 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.342 0.658 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 5.149 -17.542 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.187 4.187 3 C 0.106 3.894 4 H 0.053 0.947 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.298 5.298 14 C -0.037 4.037 15 C 0.180 3.820 16 N -0.245 5.245 17 C 0.107 3.893 18 C -0.129 4.129 19 C -0.075 4.075 20 C -0.171 4.171 21 C -0.025 4.025 22 C -0.806 4.806 23 S 2.764 3.236 24 O -0.931 6.931 25 O -0.923 6.923 26 N -0.816 5.816 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.163 0.837 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -1.846 5.333 -17.517 18.404 hybrid contribution -0.154 -0.042 0.244 0.292 sum -2.000 5.290 -17.273 18.175 Atomic orbital electron populations 1.21572 0.97537 0.98100 1.01431 1.22146 0.95264 1.01028 1.00283 1.19284 0.96245 0.88698 0.85132 0.94700 1.20984 1.30496 1.11547 0.89493 0.91868 1.24892 0.95574 0.95170 0.98676 1.69866 1.39256 1.24140 1.20418 0.86618 0.79649 0.79986 0.81460 1.20397 1.21606 1.20384 1.60759 1.03832 1.63150 1.02019 1.21180 0.99160 0.97100 0.86284 1.22936 0.84630 0.84763 0.89663 1.66707 1.14528 1.13982 1.29276 1.18063 0.93410 0.92466 0.85403 1.21160 0.95115 0.96288 1.00384 1.21343 0.97371 0.96582 0.92216 1.21307 0.98487 0.99709 0.97599 1.20339 0.93178 0.92359 0.96659 1.30793 1.23473 1.25084 1.01267 1.02812 0.74179 0.74754 0.71902 1.93649 1.62689 1.79352 1.57459 1.93711 1.76802 1.38072 1.83685 1.54421 1.20037 1.83326 1.23849 0.95893 0.95001 0.91445 0.88809 0.97058 0.93073 0.83786 0.87977 0.91903 0.83654 0.84731 0.84886 0.84903 0.72263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.39 37.16 0.35 -2.33 16 2 C -0.15 -3.25 5.50 -26.74 -0.15 -3.40 16 3 C 0.21 4.88 2.33 -68.87 -0.16 4.72 16 4 H 0.04 0.86 7.84 -51.93 -0.41 0.45 16 5 C -0.49 -12.51 7.35 -34.44 -0.25 -12.76 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.51 5.22 -17.82 -0.09 1.41 16 8 N -0.90 -24.30 11.39 55.43 0.63 -23.67 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 13 N -0.66 -12.90 5.80 -109.22 -0.63 -13.53 16 14 C 0.10 1.47 6.00 -4.98 -0.03 1.44 16 15 C 0.45 6.36 7.47 -154.83 -1.16 5.21 16 16 N -0.53 -8.23 8.59 -8.26 -0.07 -8.30 16 17 C 0.21 3.07 6.61 -84.73 -0.56 2.51 16 18 C -0.11 -1.37 10.00 -39.14 -0.39 -1.76 16 19 C -0.06 -0.55 10.00 -39.66 -0.40 -0.95 16 20 C -0.15 -1.43 10.07 -39.39 -0.40 -1.83 16 21 C -0.01 -0.06 9.74 -39.85 -0.39 -0.45 16 22 C -0.71 -9.45 5.91 -39.36 -0.23 -9.68 16 23 S 2.67 33.99 5.99 -107.50 -0.64 33.34 16 24 O -0.94 -12.90 17.98 -57.07 -1.03 -13.93 16 25 O -0.93 -14.51 18.06 -57.07 -1.03 -15.55 16 26 N -1.06 -11.85 6.03 32.78 0.20 -11.65 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.61 6.43 -51.93 -0.33 0.28 16 29 H 0.07 1.54 7.04 -51.93 -0.37 1.17 16 30 H 0.09 2.34 6.26 -51.93 -0.32 2.01 16 31 H 0.01 0.22 7.29 -51.93 -0.38 -0.16 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.34 6.68 6.06 -39.29 -0.24 6.44 16 34 H 0.10 1.41 8.11 -51.93 -0.42 0.99 16 35 H 0.06 0.91 7.29 -51.93 -0.38 0.53 16 36 H 0.15 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.44 3.31 8.96 -37.61 -0.34 2.97 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -32.18 342.05 -11.14 -43.33 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.84 Total: 6.91 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.86 Total: -17.86 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.12 Total: -57.15 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -2.06 Total: -29.48 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 33.99 SS G_CDS: -0.64 Total: 33.34 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.18 -11.14 -43.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.157 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds