Wall clock time and date at job start Tue Mar 31 2020 14:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47319 * 60.00570 * 9 7 5 11 11 H 1.48503 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00384 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21363 * 120.00498 * 0.02562 * 14 13 3 16 16 C 1.49310 * 119.99857 * 179.97438 * 14 13 3 17 17 O 1.21391 * 119.99841 * 0.02562 * 16 14 13 18 18 N 1.34767 * 120.00454 * 179.97438 * 16 14 13 19 19 C 1.38752 * 120.00449 * 180.02562 * 18 16 14 20 20 N 1.28982 * 124.92912 * 359.69618 * 19 18 16 21 21 C 1.33622 * 117.64115 * 179.78324 * 20 19 18 22 22 C 1.33772 * 113.25268 * 0.48688 * 21 20 19 23 23 S 1.70735 * 124.93252 * 180.02562 * 19 18 16 24 24 C 1.51745 * 110.89193 * 179.79571 * 22 21 20 25 25 C 1.54299 * 104.80353 * 17.25532 * 24 22 21 26 26 C 1.52638 * 137.06286 * 180.11777 * 21 20 19 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 29 29 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 30 30 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 31 31 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 32 32 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 33 33 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 34 34 H 0.97010 * 119.99966 * 0.02562 * 18 16 14 35 35 H 1.08998 * 110.37348 * 136.08778 * 24 22 21 36 36 H 1.09000 * 110.37045 * 258.31403 * 24 22 21 37 37 H 1.08997 * 110.97783 * 91.90192 * 25 24 22 38 38 H 1.09001 * 110.97422 * 215.64506 * 25 24 22 39 39 H 1.09006 * 110.32135 * 44.06395 * 26 21 20 40 40 H 1.09006 * 110.31711 * 281.87392 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1450 -0.2342 11 1 6.3978 0.2163 -2.6502 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0400 3.3315 2.6428 17 8 0.8152 3.3636 3.5764 18 7 -1.1770 3.8989 2.7578 19 6 -1.5441 4.5193 3.9434 20 7 -0.8004 4.6036 4.9939 21 6 -1.3000 5.2395 6.0576 22 6 -2.5418 5.6975 5.8641 23 16 -3.0488 5.2750 4.2262 24 6 -3.0574 6.4041 7.1040 25 6 -1.7960 6.7015 7.9415 26 6 -0.8366 5.5906 7.4689 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0607 -2.9502 33 1 2.2720 2.1231 1.9978 34 1 -1.7964 3.8736 2.0116 35 1 -3.5590 7.3325 6.8308 36 1 -3.7369 5.7547 7.6559 37 1 -1.3959 7.6880 7.7076 38 1 -2.0048 6.6100 9.0074 39 1 0.1891 5.9591 7.4499 40 1 -0.9149 4.7203 8.1205 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569188717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:57 Heat of formation + Delta-G solvation = -10.175200 kcal Electronic energy + Delta-G solvation = -24393.733843 eV Core-core repulsion = 20721.984796 eV Total energy + Delta-G solvation = -3671.749047 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.93673 -40.00485 -38.36223 -36.48824 -35.41726 -34.26131 -32.43962 -31.02393 -28.71558 -28.14344 -27.27393 -25.60732 -23.56827 -22.64224 -21.53408 -21.02745 -19.65063 -19.18969 -18.72977 -17.66631 -16.74728 -16.29225 -16.25971 -15.83461 -15.53808 -15.13058 -14.55915 -14.31801 -14.24304 -13.63347 -13.41511 -13.33246 -13.09831 -12.76636 -12.45428 -12.14004 -11.65875 -11.59467 -11.53996 -11.42216 -11.38706 -11.30392 -11.02945 -10.87198 -10.51820 -10.40257 -10.29265 -9.77472 -9.67425 -9.34845 -9.17339 -8.98869 -8.58540 -8.25278 -8.08014 -6.19123 -4.28973 0.54276 0.68488 1.47771 1.80038 2.48293 2.72535 3.24676 3.29410 3.31489 3.52773 3.66725 4.13925 4.23576 4.31937 4.61671 4.63632 5.03541 5.12558 5.13154 5.28060 5.34302 5.44774 5.50677 5.59682 5.77953 5.80096 6.08724 6.28955 6.33726 6.52332 6.71039 6.92070 7.02320 7.09931 7.24120 7.39468 7.57366 7.65033 7.76717 7.90856 8.05420 8.38661 8.57168 8.81969 9.37822 10.86241 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.002648 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.629925 B =10571.983728 C =11335.709411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.664 5.664 14 C 0.500 3.500 15 O -0.529 6.529 16 C 0.501 3.499 17 O -0.453 6.453 18 N -0.616 5.616 19 C 0.284 3.716 20 N -0.471 5.471 21 C 0.079 3.921 22 C -0.276 4.276 23 S 0.144 5.856 24 C -0.031 4.031 25 C -0.115 4.115 26 C -0.041 4.041 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.434 0.566 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 10.671 16.385 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.313 5.313 14 C 0.277 3.723 15 O -0.408 6.408 16 C 0.280 3.720 17 O -0.319 6.319 18 N -0.270 5.270 19 C -0.086 4.086 20 N -0.191 5.191 21 C -0.052 4.052 22 C -0.398 4.398 23 S 0.398 5.602 24 C -0.071 4.071 25 C -0.154 4.154 26 C -0.081 4.081 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.138 10.367 15.421 23.349 hybrid contribution 1.426 -0.072 0.417 1.488 sum -12.712 10.295 15.838 22.769 Atomic orbital electron populations 1.21861 0.98298 0.98482 1.01007 1.21973 0.92661 0.99340 1.02853 1.19047 0.94843 0.89412 0.79946 0.92625 1.21167 0.90254 1.39583 1.06638 0.91776 1.24866 0.98862 0.94549 0.95206 1.69869 1.35390 1.37340 1.09316 0.86458 0.84464 0.78440 0.77500 1.20029 1.21074 1.20087 1.46478 1.13231 1.52263 1.19345 1.19444 0.84666 0.81515 0.86637 1.90747 1.51130 1.59575 1.39300 1.21246 0.81301 0.79400 0.90064 1.90850 1.48990 1.52772 1.39294 1.42840 1.18055 1.53791 1.12307 1.23169 0.94389 1.00075 0.90987 1.65586 1.34371 1.20608 0.98581 1.21430 0.91734 0.96643 0.95407 1.26761 1.00855 1.13026 0.99139 1.83653 1.14716 1.53848 1.08017 1.20590 0.97899 0.99099 0.89492 1.22352 0.94343 0.98838 0.99905 1.20891 1.00459 0.98930 0.87797 0.95412 0.94680 0.92879 0.87765 0.94602 0.92353 0.76284 0.72587 0.90555 0.89950 0.90303 0.89472 0.89746 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.42 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.03 11.29 55.43 0.63 -23.40 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.66 -14.08 5.01 -55.41 -0.28 -14.36 16 14 C 0.50 9.85 6.45 -11.65 -0.08 9.78 16 15 O -0.53 -11.03 13.61 5.49 0.07 -10.96 16 16 C 0.50 8.97 7.85 -11.66 -0.09 8.88 16 17 O -0.45 -9.10 15.11 5.46 0.08 -9.02 16 18 N -0.62 -9.11 5.39 -13.75 -0.07 -9.18 16 19 C 0.28 4.14 7.99 -88.11 -0.70 3.43 16 20 N -0.47 -7.70 8.63 -10.50 -0.09 -7.79 16 21 C 0.08 1.02 7.69 -82.41 -0.63 0.39 16 22 C -0.28 -2.95 7.41 -35.36 -0.26 -3.21 16 23 S 0.14 1.54 23.22 -107.50 -2.50 -0.96 16 24 C -0.03 -0.21 6.80 -26.69 -0.18 -0.39 16 25 C -0.12 -0.68 7.12 -25.43 -0.18 -0.86 16 26 C -0.04 -0.37 6.81 -26.29 -0.18 -0.55 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.03 0.72 5.64 -51.93 -0.29 0.42 16 29 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 30 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.40 8.11 8.01 -40.82 -0.33 7.78 16 34 H 0.43 5.33 8.29 -40.82 -0.34 4.99 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -31.15 345.98 -9.64 -40.79 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.99 Total: 8.80 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -2.69 Total: 5.43 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.18 Total: -54.74 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.16 Total: -19.97 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.50 Total: -0.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.15 -9.64 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569188717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.614 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds