Wall clock time and date at job start Tue Mar 31 2020 14:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47319 * 60.00570 * 9 7 5 11 11 H 1.48503 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00384 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21363 * 120.00498 * 0.02562 * 14 13 3 16 16 C 1.49310 * 119.99857 * 179.97438 * 14 13 3 17 17 O 1.21391 * 119.99841 * 0.02562 * 16 14 13 18 18 N 1.34767 * 120.00454 * 179.97438 * 16 14 13 19 19 C 1.38752 * 120.00449 * 180.02562 * 18 16 14 20 20 N 1.28982 * 124.92912 * 359.69618 * 19 18 16 21 21 C 1.33622 * 117.64115 * 179.78324 * 20 19 18 22 22 C 1.33772 * 113.25268 * 0.48688 * 21 20 19 23 23 S 1.70735 * 124.93252 * 180.02562 * 19 18 16 24 24 C 1.51745 * 110.89193 * 179.79571 * 22 21 20 25 25 C 1.54299 * 104.80353 * 17.25532 * 24 22 21 26 26 C 1.52638 * 137.06286 * 180.11777 * 21 20 19 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 29 29 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 30 30 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 31 31 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 32 32 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 33 33 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 34 34 H 0.97010 * 119.99966 * 0.02562 * 18 16 14 35 35 H 1.08998 * 110.37348 * 136.08778 * 24 22 21 36 36 H 1.09000 * 110.37045 * 258.31403 * 24 22 21 37 37 H 1.08997 * 110.97783 * 91.90192 * 25 24 22 38 38 H 1.09001 * 110.97422 * 215.64506 * 25 24 22 39 39 H 1.09006 * 110.32135 * 44.06395 * 26 21 20 40 40 H 1.09006 * 110.31711 * 281.87392 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1450 -0.2342 11 1 6.3978 0.2163 -2.6502 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0400 3.3315 2.6428 17 8 0.8152 3.3636 3.5764 18 7 -1.1770 3.8989 2.7578 19 6 -1.5441 4.5193 3.9434 20 7 -0.8004 4.6036 4.9939 21 6 -1.3000 5.2395 6.0576 22 6 -2.5418 5.6975 5.8641 23 16 -3.0488 5.2750 4.2262 24 6 -3.0574 6.4041 7.1040 25 6 -1.7960 6.7015 7.9415 26 6 -0.8366 5.5906 7.4689 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0607 -2.9502 33 1 2.2720 2.1231 1.9978 34 1 -1.7964 3.8736 2.0116 35 1 -3.5590 7.3325 6.8308 36 1 -3.7369 5.7547 7.6559 37 1 -1.3959 7.6880 7.7076 38 1 -2.0048 6.6100 9.0074 39 1 0.1891 5.9591 7.4499 40 1 -0.9149 4.7203 8.1205 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569188717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:56 Heat of formation + Delta-G solvation = -30.881982 kcal Electronic energy + Delta-G solvation = -24394.631756 eV Core-core repulsion = 20721.984796 eV Total energy + Delta-G solvation = -3672.646960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19406 -41.16415 -39.83705 -37.57222 -37.11628 -35.43157 -34.33158 -32.85160 -29.44868 -29.33179 -28.80305 -26.91115 -25.22079 -24.08144 -22.36710 -22.23223 -21.42207 -20.62407 -19.79920 -18.89338 -18.11537 -17.86238 -17.41088 -17.23952 -16.89472 -16.68186 -16.06115 -15.82983 -15.16335 -15.02305 -14.73760 -14.63335 -14.18581 -13.90251 -13.69289 -13.52261 -13.22161 -13.10769 -13.01357 -12.81268 -12.67938 -12.33535 -12.23971 -12.19742 -12.13242 -12.07572 -11.62265 -11.40697 -11.14314 -11.01132 -10.57999 -10.31871 -10.24744 -9.89613 -9.18946 -8.20260 -6.37331 -0.49299 -0.27003 0.40566 0.57651 1.23124 1.45133 1.45753 1.53959 1.68655 2.16212 2.29222 2.44009 3.06460 3.10077 3.44430 3.60042 3.97763 4.17964 4.47046 4.47761 4.53183 4.57612 4.66315 4.69178 4.79618 4.89215 4.92290 4.99826 5.14953 5.18692 5.23039 5.30796 5.33732 5.36510 5.52526 5.56264 5.70136 5.78780 6.08796 6.27637 6.62167 6.68197 6.83903 7.02534 7.34027 8.84755 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.002648 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.629925 B =10571.983728 C =11335.709411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.019 0.981 5 C -0.556 4.556 6 H 0.067 0.933 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.503 3.497 15 O -0.540 6.540 16 C 0.511 3.489 17 O -0.481 6.481 18 N -0.604 5.604 19 C 0.238 3.762 20 N -0.512 5.512 21 C 0.035 3.965 22 C -0.263 4.263 23 S 0.213 5.787 24 C -0.032 4.032 25 C -0.103 4.103 26 C -0.044 4.044 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.268 0.732 33 H 0.408 0.592 34 H 0.444 0.556 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.335 11.918 18.422 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.036 0.964 5 C -0.594 4.594 6 H 0.085 0.915 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.793 3.207 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.318 5.318 14 C 0.282 3.718 15 O -0.420 6.420 16 C 0.290 3.710 17 O -0.349 6.349 18 N -0.258 5.258 19 C -0.130 4.130 20 N -0.234 5.234 21 C -0.095 4.095 22 C -0.385 4.385 23 S 0.467 5.533 24 C -0.072 4.072 25 C -0.142 4.142 26 C -0.084 4.084 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.243 0.757 34 H 0.286 0.714 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.627 11.640 17.473 26.173 hybrid contribution 1.714 -0.362 -0.144 1.758 sum -13.913 11.278 17.329 24.921 Atomic orbital electron populations 1.21717 0.96464 0.99786 1.00454 1.21830 0.94252 0.98448 1.01743 1.18685 0.94128 0.89639 0.80092 0.96356 1.21481 0.91214 1.39751 1.06988 0.91532 1.25661 1.03163 0.94107 0.94839 1.69994 1.37071 1.37828 1.09712 0.85460 0.79213 0.78434 0.77628 1.19288 1.20684 1.19828 1.46260 1.14146 1.52863 1.18517 1.19725 0.83896 0.80853 0.87317 1.90732 1.51354 1.59803 1.40072 1.20628 0.82232 0.79535 0.88648 1.90838 1.50106 1.54278 1.39720 1.42554 1.16984 1.53092 1.13192 1.23332 0.96732 1.02262 0.90658 1.65522 1.36587 1.21357 0.99890 1.22040 0.93258 0.97924 0.96303 1.27561 1.00171 1.10754 1.00021 1.83366 1.10970 1.51545 1.07410 1.20858 0.98667 0.99898 0.87740 1.22395 0.92739 0.97746 1.01348 1.21088 1.00938 1.00295 0.86063 0.93142 0.94263 0.94269 0.90106 0.94274 0.92281 0.75696 0.71442 0.88536 0.87963 0.89785 0.86556 0.90607 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.28 13.99 2.24 44.24 0.10 14.09 16 4 H 0.02 1.07 7.58 -2.39 -0.02 1.05 16 5 C -0.56 -29.60 8.73 25.60 0.22 -29.38 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.25 5.29 84.65 0.45 1.69 16 8 N -0.91 -50.51 11.29 21.45 0.24 -50.27 16 9 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 N -0.67 -29.19 5.01 -447.58 -2.24 -31.44 16 14 C 0.50 20.35 6.45 87.23 0.56 20.91 16 15 O -0.54 -23.03 13.61 -3.29 -0.04 -23.08 16 16 C 0.51 18.73 7.85 87.23 0.68 19.42 16 17 O -0.48 -19.91 15.11 -3.38 -0.05 -19.96 16 18 N -0.60 -17.99 5.39 -315.76 -1.70 -19.69 16 19 C 0.24 6.88 7.99 179.47 1.43 8.31 16 20 N -0.51 -16.87 8.63 -187.13 -1.61 -18.48 16 21 C 0.03 0.87 7.69 41.90 0.32 1.19 16 22 C -0.26 -4.99 7.41 25.00 0.19 -4.81 16 23 S 0.21 4.11 23.22 -56.49 -1.31 2.80 16 24 C -0.03 -0.31 6.80 30.62 0.21 -0.10 16 25 C -0.10 -0.87 7.12 31.44 0.22 -0.64 16 26 C -0.04 -0.73 6.81 30.88 0.21 -0.52 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.61 5.64 -2.39 -0.01 1.59 16 29 H 0.04 1.75 7.85 -2.39 -0.02 1.73 16 30 H 0.08 4.30 5.95 -2.39 -0.01 4.29 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.41 16.94 8.01 -92.70 -0.74 16.19 16 34 H 0.44 10.86 8.29 -92.70 -0.77 10.09 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -69.26 345.98 0.28 -68.98 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.40 Total: 27.38 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 5.38 Total: 19.58 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -5.32 Total: -119.88 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.10 Total: -43.04 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.31 Total: 2.80 kcal Total: -69.26 0.28 -68.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569188717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.100 kcal (2) G-P(sol) polarization free energy of solvation -69.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds