Wall clock time and date at job start Tue Mar 31 2020 14:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21366 * 120.00196 * 359.97438 * 14 13 3 16 16 C 1.49302 * 119.99966 * 180.02562 * 14 13 3 17 17 O 1.21389 * 119.99947 * 359.97438 * 16 14 13 18 18 N 1.34773 * 120.00475 * 179.97438 * 16 14 13 19 19 C 1.38755 * 120.00586 * 179.97438 * 18 16 14 20 20 N 1.28988 * 124.92570 * 359.69634 * 19 18 16 21 21 C 1.33622 * 117.63986 * 179.78330 * 20 19 18 22 22 C 1.33784 * 113.24650 * 0.48681 * 21 20 19 23 23 S 1.70726 * 124.92977 * 180.02562 * 19 18 16 24 24 C 1.51747 * 110.88645 * 179.79588 * 22 21 20 25 25 C 1.54298 * 104.80566 * 17.25364 * 24 22 21 26 26 C 1.52634 * 137.06663 * 180.11674 * 21 20 19 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 30 30 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 31 31 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 32 32 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 34 34 H 0.97000 * 119.99766 * 359.97438 * 18 16 14 35 35 H 1.08994 * 110.37469 * 136.08607 * 24 22 21 36 36 H 1.09000 * 110.36993 * 258.31440 * 24 22 21 37 37 H 1.09001 * 110.97491 * 91.90614 * 25 24 22 38 38 H 1.08998 * 110.97446 * 215.64227 * 25 24 22 39 39 H 1.08999 * 110.31773 * 44.06308 * 26 21 20 40 40 H 1.08997 * 110.31410 * 281.87359 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3354 2.6302 -0.4635 16 6 0.0681 3.3214 -2.6711 17 8 0.8532 3.3500 -3.5965 18 7 -1.1481 3.8874 -2.8016 19 6 -1.5025 4.5032 -3.9933 20 7 -0.7432 4.5941 -5.0320 21 6 -1.2353 5.2164 -6.1072 22 6 -2.4800 5.6736 -5.9291 23 16 -3.0041 5.2577 -4.2949 24 6 -2.9832 6.3734 -7.1780 25 6 -2.0378 5.9014 -8.3024 26 6 -0.7563 5.5641 -7.5141 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8280 1.5270 2.3971 33 1 2.2931 2.1156 -1.9978 34 1 -1.7756 3.8642 -2.0623 35 1 -4.0087 6.0738 -7.3937 36 1 -2.9219 7.4550 -7.0575 37 1 -2.4344 5.0162 -8.7996 38 1 -1.8558 6.7011 -9.0204 39 1 -0.2493 4.7101 -7.9631 40 1 -0.0915 6.4275 -7.4849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569188720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:00 Heat of formation + Delta-G solvation = -10.069339 kcal Electronic energy + Delta-G solvation = -24471.359303 eV Core-core repulsion = 20799.614847 eV Total energy + Delta-G solvation = -3671.744456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98625 -40.07188 -38.48818 -36.52431 -35.55962 -34.30018 -32.43479 -31.55274 -28.73167 -28.21931 -27.71740 -25.71022 -23.47227 -22.64254 -21.56484 -21.13136 -19.80236 -19.31315 -18.76337 -17.72886 -16.83619 -16.67565 -16.31898 -15.82302 -15.70946 -15.31936 -14.64092 -14.29609 -14.24420 -13.69934 -13.53841 -13.42598 -13.11201 -12.86180 -12.48667 -12.40132 -12.03203 -11.93971 -11.63329 -11.55321 -11.47982 -11.41498 -11.01175 -10.82369 -10.78849 -10.54806 -10.09673 -9.93349 -9.76592 -9.37450 -9.32132 -9.08581 -8.79312 -8.31222 -8.25684 -6.29731 -4.34765 0.51280 0.65327 1.45002 1.72451 2.41893 2.69222 3.20550 3.29105 3.34045 3.46284 3.56779 4.09155 4.22048 4.25465 4.58937 4.62357 4.85203 5.11198 5.12049 5.26549 5.33003 5.43379 5.48894 5.58016 5.75516 5.79024 5.93962 5.97437 6.05251 6.10807 6.48640 6.63124 6.69649 6.76410 6.85509 7.06998 7.19084 7.35607 7.49386 7.81367 7.99003 8.36498 8.50865 8.73340 9.29611 10.81661 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.025781 B = 0.002765 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.805565 B =10123.388349 C =10544.684250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.236 3.764 4 H 0.055 0.945 5 C -0.535 4.535 6 H 0.082 0.918 7 C 0.083 3.917 8 N -0.883 5.883 9 Si 0.872 3.128 10 H -0.272 1.272 11 H -0.257 1.257 12 H -0.284 1.284 13 N -0.659 5.659 14 C 0.499 3.501 15 O -0.534 6.534 16 C 0.501 3.499 17 O -0.449 6.449 18 N -0.616 5.616 19 C 0.283 3.717 20 N -0.470 5.470 21 C 0.079 3.921 22 C -0.275 4.275 23 S 0.144 5.856 24 C -0.031 4.031 25 C -0.115 4.115 26 C -0.041 4.041 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.269 0.731 33 H 0.407 0.593 34 H 0.434 0.566 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.598 8.624 -15.460 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.134 3.866 4 H 0.073 0.927 5 C -0.572 4.572 6 H 0.100 0.900 7 C -0.122 4.122 8 N -0.519 5.519 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.210 1.210 13 N -0.308 5.308 14 C 0.277 3.723 15 O -0.413 6.413 16 C 0.280 3.720 17 O -0.315 6.315 18 N -0.270 5.270 19 C -0.087 4.087 20 N -0.190 5.190 21 C -0.052 4.052 22 C -0.397 4.397 23 S 0.397 5.603 24 C -0.071 4.071 25 C -0.154 4.154 26 C -0.081 4.081 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.672 8.444 -14.557 25.137 hybrid contribution 0.107 0.173 0.354 0.408 sum -18.565 8.617 -14.203 24.913 Atomic orbital electron populations 1.21925 0.97397 0.99274 1.01805 1.22116 0.93690 0.98983 1.01842 1.19383 0.96130 0.89315 0.81746 0.92693 1.20978 0.88234 1.52745 0.95288 0.89961 1.24921 0.94926 0.93495 0.98845 1.69873 1.09624 1.47874 1.24532 0.86929 0.81303 0.79569 0.82391 1.19760 1.18156 1.21021 1.46604 1.13086 1.52196 1.18961 1.19590 0.84596 0.81338 0.86741 1.90735 1.50628 1.59736 1.40181 1.21146 0.81411 0.79520 0.89956 1.90866 1.48235 1.52488 1.39924 1.42822 1.17890 1.54040 1.12265 1.23158 0.94335 1.00225 0.91012 1.65586 1.34206 1.20561 0.98679 1.21438 0.91501 0.96731 0.95517 1.26770 1.01038 1.12444 0.99440 1.83644 1.14671 1.53789 1.08149 1.20595 0.99588 0.99047 0.87868 1.22353 0.94271 1.02097 0.96707 1.20893 0.98052 1.02391 0.86758 0.93543 0.94674 0.92858 0.92567 0.91499 0.92059 0.75709 0.72634 0.90553 0.89924 0.90305 0.89447 0.89719 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.53 37.16 0.32 -2.43 16 2 C -0.13 -2.65 5.54 -26.73 -0.15 -2.80 16 3 C 0.24 5.40 1.82 -69.08 -0.13 5.27 16 4 H 0.06 1.34 4.92 -51.93 -0.26 1.08 16 5 C -0.53 -14.12 9.05 -34.44 -0.31 -14.43 16 6 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 8 N -0.88 -25.65 13.96 55.43 0.77 -24.88 16 9 Si 0.87 20.75 26.69 -169.99 -4.54 16.21 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.26 -5.90 6.88 56.52 0.39 -5.51 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.66 -13.46 5.02 -55.41 -0.28 -13.74 16 14 C 0.50 9.43 6.48 -11.65 -0.08 9.35 16 15 O -0.53 -10.51 13.61 5.48 0.07 -10.43 16 16 C 0.50 8.72 7.85 -11.66 -0.09 8.62 16 17 O -0.45 -8.89 15.11 5.46 0.08 -8.81 16 18 N -0.62 -8.82 5.39 -13.75 -0.07 -8.89 16 19 C 0.28 4.03 7.99 -88.10 -0.70 3.33 16 20 N -0.47 -7.58 8.63 -10.50 -0.09 -7.67 16 21 C 0.08 1.01 7.69 -82.41 -0.63 0.38 16 22 C -0.28 -2.89 7.41 -35.36 -0.26 -3.15 16 23 S 0.14 1.49 23.22 -107.50 -2.50 -1.00 16 24 C -0.03 -0.21 6.80 -26.69 -0.18 -0.39 16 25 C -0.11 -0.66 7.12 -25.43 -0.18 -0.85 16 26 C -0.04 -0.36 6.81 -26.29 -0.18 -0.54 16 27 H 0.05 0.86 5.63 -51.93 -0.29 0.57 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.43 7.90 -51.93 -0.41 1.02 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.41 8.05 8.06 -40.82 -0.33 7.72 16 34 H 0.43 5.07 8.29 -40.82 -0.34 4.74 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -32.29 345.47 -9.00 -41.29 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -4.99 Total: 8.16 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -2.68 Total: 4.55 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.33 Total: -55.18 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.16 Total: -19.24 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.54 Total: 16.21 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.50 Total: -1.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.29 -9.00 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569188720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.221 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds