Wall clock time and date at job start Tue Mar 31 2020 14:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21366 * 120.00196 * 359.97438 * 14 13 3 16 16 C 1.49302 * 119.99966 * 180.02562 * 14 13 3 17 17 O 1.21389 * 119.99947 * 359.97438 * 16 14 13 18 18 N 1.34773 * 120.00475 * 179.97438 * 16 14 13 19 19 C 1.38755 * 120.00586 * 179.97438 * 18 16 14 20 20 N 1.28988 * 124.92570 * 359.69634 * 19 18 16 21 21 C 1.33622 * 117.63986 * 179.78330 * 20 19 18 22 22 C 1.33784 * 113.24650 * 0.48681 * 21 20 19 23 23 S 1.70726 * 124.92977 * 180.02562 * 19 18 16 24 24 C 1.51747 * 110.88645 * 179.79588 * 22 21 20 25 25 C 1.54298 * 104.80566 * 17.25364 * 24 22 21 26 26 C 1.52634 * 137.06663 * 180.11674 * 21 20 19 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 30 30 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 31 31 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 32 32 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 34 34 H 0.97000 * 119.99766 * 359.97438 * 18 16 14 35 35 H 1.08994 * 110.37469 * 136.08607 * 24 22 21 36 36 H 1.09000 * 110.36993 * 258.31440 * 24 22 21 37 37 H 1.09001 * 110.97491 * 91.90614 * 25 24 22 38 38 H 1.08998 * 110.97446 * 215.64227 * 25 24 22 39 39 H 1.08999 * 110.31773 * 44.06308 * 26 21 20 40 40 H 1.08997 * 110.31410 * 281.87359 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3354 2.6302 -0.4635 16 6 0.0681 3.3214 -2.6711 17 8 0.8532 3.3500 -3.5965 18 7 -1.1481 3.8874 -2.8016 19 6 -1.5025 4.5032 -3.9933 20 7 -0.7432 4.5941 -5.0320 21 6 -1.2353 5.2164 -6.1072 22 6 -2.4800 5.6736 -5.9291 23 16 -3.0041 5.2577 -4.2949 24 6 -2.9832 6.3734 -7.1780 25 6 -2.0378 5.9014 -8.3024 26 6 -0.7563 5.5641 -7.5141 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8280 1.5270 2.3971 33 1 2.2931 2.1156 -1.9978 34 1 -1.7756 3.8642 -2.0623 35 1 -4.0087 6.0738 -7.3937 36 1 -2.9219 7.4550 -7.0575 37 1 -2.4344 5.0162 -8.7996 38 1 -1.8558 6.7011 -9.0204 39 1 -0.2493 4.7101 -7.9631 40 1 -0.0915 6.4275 -7.4849 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569188720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:59 Heat of formation + Delta-G solvation = -32.742110 kcal Electronic energy + Delta-G solvation = -24472.342468 eV Core-core repulsion = 20799.614847 eV Total energy + Delta-G solvation = -3672.727622 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.21632 -41.18999 -39.89058 -37.59027 -37.15340 -35.42399 -34.43225 -33.19312 -29.73002 -29.39731 -28.91414 -26.95085 -25.00232 -24.09186 -22.38948 -22.23918 -21.48140 -20.69394 -19.80365 -19.07825 -18.39763 -17.93450 -17.49393 -17.19578 -17.00105 -16.69565 -16.03200 -15.87428 -15.19685 -15.04086 -14.79374 -14.79059 -14.19303 -14.00785 -13.81946 -13.72359 -13.69829 -13.12396 -12.97181 -12.86812 -12.61568 -12.39336 -12.33670 -12.24489 -12.07936 -11.85888 -11.72092 -11.41207 -11.28478 -11.04227 -10.87677 -10.33366 -10.24874 -9.98574 -9.19346 -8.40820 -6.49677 -0.49768 -0.27435 0.38059 0.56971 1.19464 1.33139 1.35247 1.45449 1.67652 2.13329 2.25983 2.29352 2.91397 3.09292 3.41430 3.59657 3.97324 4.17494 4.26421 4.37500 4.46818 4.47440 4.57301 4.66033 4.74265 4.79172 4.89083 4.91972 5.06609 5.12796 5.14699 5.19833 5.21882 5.29972 5.33268 5.47768 5.55259 5.59268 5.97395 6.29722 6.52354 6.62480 6.83243 6.91780 7.18835 8.74292 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.025781 B = 0.002765 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.805565 B =10123.388349 C =10544.684250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.242 3.758 4 H 0.046 0.954 5 C -0.536 4.536 6 H 0.050 0.950 7 C 0.032 3.968 8 N -0.930 5.930 9 Si 0.929 3.071 10 H -0.272 1.272 11 H -0.241 1.241 12 H -0.278 1.278 13 N -0.667 5.667 14 C 0.506 3.494 15 O -0.537 6.537 16 C 0.509 3.491 17 O -0.481 6.481 18 N -0.603 5.603 19 C 0.238 3.762 20 N -0.512 5.512 21 C 0.035 3.965 22 C -0.263 4.263 23 S 0.216 5.784 24 C -0.032 4.032 25 C -0.103 4.103 26 C -0.045 4.045 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.272 0.728 33 H 0.409 0.591 34 H 0.444 0.556 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.216 9.740 -16.397 29.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.140 3.860 4 H 0.064 0.936 5 C -0.574 4.574 6 H 0.068 0.932 7 C -0.169 4.169 8 N -0.568 5.568 9 Si 0.752 3.248 10 H -0.197 1.197 11 H -0.165 1.165 12 H -0.203 1.203 13 N -0.317 5.317 14 C 0.285 3.715 15 O -0.417 6.417 16 C 0.288 3.712 17 O -0.350 6.350 18 N -0.258 5.258 19 C -0.130 4.130 20 N -0.234 5.234 21 C -0.096 4.096 22 C -0.385 4.385 23 S 0.469 5.531 24 C -0.072 4.072 25 C -0.142 4.142 26 C -0.085 4.085 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.244 0.756 34 H 0.287 0.713 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.357 9.574 -15.503 28.842 hybrid contribution 1.137 -0.081 0.479 1.237 sum -21.220 9.493 -15.024 27.679 Atomic orbital electron populations 1.21817 0.95298 1.00951 1.01393 1.22036 0.95492 0.97214 1.01786 1.19167 0.93701 0.90738 0.82434 0.93639 1.21166 0.90098 1.51883 0.94244 0.93159 1.25684 0.95963 0.93398 1.01828 1.69992 1.11438 1.49940 1.25388 0.86017 0.80255 0.79541 0.78961 1.19738 1.16464 1.20342 1.46357 1.14061 1.53010 1.18264 1.19725 0.83793 0.80667 0.87340 1.90721 1.50618 1.59707 1.40616 1.20640 0.82266 0.79613 0.88701 1.90857 1.49459 1.54117 1.40549 1.42544 1.16852 1.53279 1.13089 1.23338 0.96637 1.02335 0.90711 1.65522 1.36513 1.21358 1.00027 1.22027 0.93035 0.98138 0.96355 1.27561 1.00294 1.10193 1.00443 1.83339 1.10897 1.51440 1.07394 1.20855 1.00692 0.99712 0.85914 1.22392 0.92024 1.03318 0.96474 1.21086 0.99854 1.02164 0.85354 0.93649 0.91992 0.93477 0.92246 0.92017 0.91871 0.75578 0.71347 0.88456 0.88045 0.89701 0.86638 0.90601 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 8.53 71.98 0.61 -4.26 16 2 C -0.13 -5.17 5.54 30.59 0.17 -5.00 16 3 C 0.24 11.14 1.82 44.25 0.08 11.22 16 4 H 0.05 2.19 4.92 -2.39 -0.01 2.18 16 5 C -0.54 -29.13 9.05 25.60 0.23 -28.90 16 6 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 7 C 0.03 1.79 5.47 84.65 0.46 2.25 16 8 N -0.93 -55.58 13.96 21.45 0.30 -55.28 16 9 Si 0.93 42.87 26.69 68.60 1.83 44.71 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.24 -10.42 6.88 99.48 0.68 -9.74 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 N -0.67 -27.70 5.02 -447.57 -2.25 -29.95 16 14 C 0.51 19.08 6.48 87.22 0.57 19.65 16 15 O -0.54 -20.65 13.61 -3.30 -0.04 -20.69 16 16 C 0.51 17.93 7.85 87.22 0.68 18.62 16 17 O -0.48 -19.68 15.11 -3.37 -0.05 -19.73 16 18 N -0.60 -17.07 5.39 -315.76 -1.70 -18.77 16 19 C 0.24 6.65 7.99 179.47 1.43 8.09 16 20 N -0.51 -16.67 8.63 -187.12 -1.61 -18.28 16 21 C 0.03 0.85 7.69 41.90 0.32 1.18 16 22 C -0.26 -4.88 7.41 25.01 0.19 -4.70 16 23 S 0.22 3.97 23.22 -56.49 -1.31 2.66 16 24 C -0.03 -0.30 6.80 30.62 0.21 -0.10 16 25 C -0.10 -0.85 7.12 31.44 0.22 -0.63 16 26 C -0.04 -0.74 6.81 30.88 0.21 -0.53 16 27 H 0.04 1.60 5.63 -2.39 -0.01 1.59 16 28 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.05 1.72 7.88 -2.39 -0.02 1.70 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 2.57 7.90 -2.38 -0.02 2.55 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.41 16.81 8.06 -92.71 -0.75 16.07 16 34 H 0.44 9.97 8.29 -92.71 -0.77 9.20 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -72.07 345.47 0.12 -71.94 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: -0.43 Total: 26.50 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 5.39 Total: 16.89 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -5.26 Total: -122.28 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.10 Total: -40.42 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.83 Total: 44.71 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.31 Total: 2.66 kcal Total: -72.07 0.12 -71.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569188720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.201 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds