Wall clock time and date at job start Tue Mar 31 2020 13:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47434 * 120.00032 * 2 1 3 5 5 C 1.53002 * 109.47139 * 175.00396 * 4 2 1 6 6 N 1.46503 * 109.47010 * 179.97438 * 5 4 2 7 7 C 1.46492 * 120.00059 * 270.00163 * 6 5 4 8 8 C 1.50701 * 109.46741 * 269.99959 * 7 6 5 9 9 H 1.07996 * 120.00500 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00133 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99757 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00236 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47375 * 89.99756 * 12 10 8 14 14 H 1.48501 * 109.47408 * 209.99545 * 12 10 8 15 15 H 1.48501 * 109.47318 * 329.99981 * 12 10 8 16 16 C 1.38696 * 119.99795 * 89.99862 * 6 5 4 17 17 N 1.30242 * 126.17004 * 0.02562 * 16 6 5 18 18 N 1.26103 * 117.62309 * 179.97438 * 17 16 6 19 19 C 1.29323 * 117.96902 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.06233 * 179.97438 * 19 18 17 21 21 F 1.39894 * 109.47398 * 5.02074 * 20 19 18 22 22 F 1.39904 * 109.46826 * 125.02723 * 20 19 18 23 23 F 1.39909 * 109.46753 * 245.02190 * 20 19 18 24 24 S 1.76482 * 107.86744 * 359.97438 * 19 18 17 25 25 H 1.09003 * 109.47460 * 299.99753 * 1 2 3 26 26 H 1.08998 * 109.47571 * 60.00405 * 1 2 3 27 27 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47040 * 240.00112 * 2 1 3 29 29 H 1.09003 * 109.46823 * 59.99857 * 3 2 1 30 30 H 1.09000 * 109.47188 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47008 * 300.00346 * 3 2 1 32 32 H 1.09001 * 109.47126 * 55.00265 * 4 2 1 33 33 H 1.08999 * 109.46893 * 295.00139 * 4 2 1 34 34 H 1.09001 * 109.47219 * 59.99925 * 5 4 2 35 35 H 1.08999 * 109.47018 * 299.99666 * 5 4 2 36 36 H 1.08994 * 109.47426 * 29.99571 * 7 6 5 37 37 H 1.09002 * 109.47339 * 150.00246 * 7 6 5 38 38 H 0.97010 * 119.99842 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0533 -1.5210 2.3844 7 6 4.4017 -0.7528 3.5821 8 6 5.8556 -0.3608 3.5222 9 1 6.4598 -0.6549 2.6767 10 6 6.4148 0.3724 4.5472 11 7 5.6792 0.7300 5.5771 12 14 8.2171 0.8576 4.4733 13 1 8.3485 2.1719 3.7945 14 1 8.7602 0.9561 5.8519 15 1 8.9755 -0.1693 3.7146 16 6 4.1859 -2.9016 2.3831 17 7 3.9130 -3.6990 1.3901 18 7 4.0944 -4.9346 1.5657 19 6 4.5372 -5.3251 2.7162 20 6 4.8173 -6.7492 3.1221 21 9 4.6338 -7.5926 2.0212 22 9 6.1368 -6.8539 3.5752 23 9 3.9413 -7.1228 4.1470 24 16 4.7552 -3.8947 3.7266 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6055 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.9995 0.1677 1.1420 35 1 3.8533 -1.3938 0.3002 36 1 3.7852 0.1447 3.6302 37 1 4.2260 -1.3623 4.4685 38 1 6.0725 1.2462 6.2981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570636370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:58 Heat of formation + Delta-G solvation = -102.638358 kcal Electronic energy + Delta-G solvation = -25226.555290 eV Core-core repulsion = 21008.939999 eV Total energy + Delta-G solvation = -4217.615291 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.03429 -47.57238 -47.53175 -40.57578 -37.82228 -35.73697 -33.06744 -31.29976 -29.58213 -28.15487 -27.12580 -26.13896 -24.43557 -23.61361 -22.09824 -20.09350 -19.81011 -19.17428 -18.45246 -17.77756 -17.72118 -16.84165 -15.90524 -15.33736 -15.01624 -14.94135 -14.40604 -14.33568 -14.30223 -13.97395 -13.95800 -13.69134 -13.68797 -13.35114 -13.19035 -12.95977 -12.64424 -12.35482 -12.22403 -11.98304 -11.85291 -11.43049 -11.10710 -11.05232 -10.95708 -10.63473 -10.47177 -10.45396 -10.32331 -10.10592 -9.81603 -9.78170 -9.27953 -8.79755 -7.48697 -6.40469 -4.52105 0.79953 0.96138 1.60735 2.60995 2.91953 3.11023 3.18801 3.19713 3.28523 3.71479 4.16297 4.28428 4.44829 4.83501 4.92034 4.94482 4.98550 5.15362 5.30024 5.43743 5.58290 5.66405 5.74097 5.79442 5.84795 5.93637 6.09261 6.12137 6.24143 6.36982 6.47077 6.48788 6.74625 7.20909 7.45804 7.55030 7.68781 8.53157 8.94358 9.17556 10.65138 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.008314 B = 0.005320 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.859198 B = 5261.488248 C = 8020.543297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.130 4.130 5 C 0.121 3.879 6 N -0.520 5.520 7 C 0.241 3.759 8 C -0.550 4.550 9 H 0.066 0.934 10 C 0.071 3.929 11 N -0.886 5.886 12 Si 0.902 3.098 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.331 3.669 17 N -0.363 5.363 18 N -0.149 5.149 19 C -0.192 4.192 20 C 0.573 3.427 21 F -0.161 7.161 22 F -0.168 7.168 23 F -0.170 7.170 24 S 0.136 5.864 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 -4.972 -5.459 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.229 5.229 7 C 0.122 3.878 8 C -0.589 4.589 9 H 0.084 0.916 10 C -0.134 4.134 11 N -0.523 5.523 12 Si 0.728 3.272 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.195 1.195 16 C -0.039 4.039 17 N -0.218 5.218 18 N 0.009 4.991 19 C -0.476 4.476 20 C 0.514 3.486 21 F -0.143 7.143 22 F -0.150 7.150 23 F -0.151 7.151 24 S 0.373 5.627 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.910 -4.631 -5.455 9.281 hybrid contribution 1.041 0.213 0.210 1.083 sum -4.869 -4.418 -5.245 8.410 Atomic orbital electron populations 1.21819 0.95327 1.01601 1.01501 1.21027 0.95614 0.96327 0.98128 1.21924 1.01551 0.95796 1.01569 1.22041 0.95496 1.01025 0.98298 1.21771 0.93777 0.98118 0.86659 1.47274 1.60386 0.98338 1.16949 1.19847 0.97280 0.91478 0.79185 1.21367 0.94310 1.36251 1.06932 0.91611 1.24922 0.98792 0.94976 0.94675 1.69906 1.36570 1.36942 1.08871 0.86419 0.83839 0.79151 0.77766 1.20239 1.20719 1.19508 1.27038 0.92805 0.92514 0.91560 1.71585 1.31001 0.94990 1.24271 1.70573 1.04960 1.07446 1.16094 1.28516 1.22235 0.98408 0.98406 1.16502 0.74303 0.82965 0.74787 1.93219 1.94962 1.72588 1.53483 1.93240 1.35983 1.96465 1.89281 1.93232 1.69391 1.92307 1.60201 1.86215 1.66083 0.96032 1.14328 0.92758 0.92878 0.92800 0.91037 0.92521 0.92128 0.93017 0.91645 0.91446 0.88892 0.90081 0.92706 0.94198 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 37.16 0.34 -1.14 16 2 C -0.09 -1.05 2.92 -90.62 -0.26 -1.31 16 3 C -0.15 -1.65 8.95 37.16 0.33 -1.32 16 4 C -0.13 -1.79 5.01 -26.73 -0.13 -1.92 16 5 C 0.12 1.93 5.31 -4.04 -0.02 1.91 16 6 N -0.52 -9.93 2.56 -175.46 -0.45 -10.38 16 7 C 0.24 5.27 5.19 -5.20 -0.03 5.24 16 8 C -0.55 -13.40 9.39 -34.44 -0.32 -13.73 16 9 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -23.10 13.29 55.43 0.74 -22.36 16 12 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 C 0.33 6.44 8.04 -87.14 -0.70 5.74 16 17 N -0.36 -7.10 10.94 31.00 0.34 -6.76 16 18 N -0.15 -2.87 11.33 33.57 0.38 -2.49 16 19 C -0.19 -3.42 7.08 -13.34 -0.09 -3.52 16 20 C 0.57 8.92 3.57 36.00 0.13 9.05 16 21 F -0.16 -2.47 17.14 2.25 0.04 -2.43 16 22 F -0.17 -2.55 17.30 2.25 0.04 -2.51 16 23 F -0.17 -2.50 17.30 2.25 0.04 -2.47 16 24 S 0.14 2.52 22.25 -107.50 -2.39 0.13 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.46 6.49 -51.93 -0.34 1.12 16 35 H 0.08 1.28 7.67 -51.93 -0.40 0.88 16 36 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 37 H 0.04 0.93 7.16 -51.93 -0.37 0.55 16 38 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 350.29 15.07 5.28 5.28 Total: -1.00 -25.44 350.29 -6.67 -32.10 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.79 Total: -3.46 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.86 Total: 0.68 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 1.01 Total: -42.00 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.12 Total: -7.41 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.39 Total: 0.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -25.44 -6.67 -32.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570636370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.536 kcal (2) G-P(sol) polarization free energy of solvation -25.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds