Wall clock time and date at job start Tue Mar 31 2020 13:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47434 * 120.00032 * 2 1 3 5 5 C 1.53002 * 109.47139 * 175.00396 * 4 2 1 6 6 N 1.46503 * 109.47010 * 179.97438 * 5 4 2 7 7 C 1.46492 * 120.00059 * 270.00163 * 6 5 4 8 8 C 1.50701 * 109.46741 * 269.99959 * 7 6 5 9 9 H 1.07996 * 120.00500 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00133 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99757 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00236 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47375 * 89.99756 * 12 10 8 14 14 H 1.48501 * 109.47408 * 209.99545 * 12 10 8 15 15 H 1.48501 * 109.47318 * 329.99981 * 12 10 8 16 16 C 1.38696 * 119.99795 * 89.99862 * 6 5 4 17 17 N 1.30242 * 126.17004 * 0.02562 * 16 6 5 18 18 N 1.26103 * 117.62309 * 179.97438 * 17 16 6 19 19 C 1.29323 * 117.96902 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.06233 * 179.97438 * 19 18 17 21 21 F 1.39894 * 109.47398 * 5.02074 * 20 19 18 22 22 F 1.39904 * 109.46826 * 125.02723 * 20 19 18 23 23 F 1.39909 * 109.46753 * 245.02190 * 20 19 18 24 24 S 1.76482 * 107.86744 * 359.97438 * 19 18 17 25 25 H 1.09003 * 109.47460 * 299.99753 * 1 2 3 26 26 H 1.08998 * 109.47571 * 60.00405 * 1 2 3 27 27 H 1.09003 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47040 * 240.00112 * 2 1 3 29 29 H 1.09003 * 109.46823 * 59.99857 * 3 2 1 30 30 H 1.09000 * 109.47188 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47008 * 300.00346 * 3 2 1 32 32 H 1.09001 * 109.47126 * 55.00265 * 4 2 1 33 33 H 1.08999 * 109.46893 * 295.00139 * 4 2 1 34 34 H 1.09001 * 109.47219 * 59.99925 * 5 4 2 35 35 H 1.08999 * 109.47018 * 299.99666 * 5 4 2 36 36 H 1.08994 * 109.47426 * 29.99571 * 7 6 5 37 37 H 1.09002 * 109.47339 * 150.00246 * 7 6 5 38 38 H 0.97010 * 119.99842 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0533 -1.5210 2.3844 7 6 4.4017 -0.7528 3.5821 8 6 5.8556 -0.3608 3.5222 9 1 6.4598 -0.6549 2.6767 10 6 6.4148 0.3724 4.5472 11 7 5.6792 0.7300 5.5771 12 14 8.2171 0.8576 4.4733 13 1 8.3485 2.1719 3.7945 14 1 8.7602 0.9561 5.8519 15 1 8.9755 -0.1693 3.7146 16 6 4.1859 -2.9016 2.3831 17 7 3.9130 -3.6990 1.3901 18 7 4.0944 -4.9346 1.5657 19 6 4.5372 -5.3251 2.7162 20 6 4.8173 -6.7492 3.1221 21 9 4.6338 -7.5926 2.0212 22 9 6.1368 -6.8539 3.5752 23 9 3.9413 -7.1228 4.1470 24 16 4.7552 -3.8947 3.7266 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6055 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 3.9995 0.1677 1.1420 35 1 3.8533 -1.3938 0.3002 36 1 3.7852 0.1447 3.6302 37 1 4.2260 -1.3623 4.4685 38 1 6.0725 1.2462 6.2981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570636370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:57 Heat of formation + Delta-G solvation = -113.209376 kcal Electronic energy + Delta-G solvation = -25227.013683 eV Core-core repulsion = 21008.939999 eV Total energy + Delta-G solvation = -4218.073684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.29383 -48.81987 -48.78621 -42.08421 -39.17885 -36.92820 -34.91187 -32.77117 -30.92766 -29.72143 -27.99218 -27.68949 -25.80689 -25.16961 -23.59984 -21.39872 -20.87847 -20.61639 -19.71240 -19.17549 -19.11641 -18.69217 -17.39409 -16.83964 -16.57853 -16.12518 -15.73552 -15.64117 -15.58348 -15.21643 -15.14821 -14.93331 -14.93150 -14.65713 -14.54890 -14.52713 -13.89702 -13.70693 -13.62688 -13.33240 -13.03209 -12.80734 -12.72267 -12.41894 -12.33346 -12.10529 -11.74214 -11.59203 -11.58591 -11.50959 -11.44815 -11.30267 -10.80850 -10.69930 -9.04188 -8.29501 -6.48495 -0.69314 -0.52129 0.10885 1.25123 1.38206 1.39420 1.42853 1.50234 1.75710 2.33415 2.38195 2.98301 3.00174 3.16951 3.54035 3.83102 3.91204 3.96792 4.07008 4.20739 4.48976 4.61133 4.66276 4.77367 4.81694 4.89628 4.95441 5.04590 5.10643 5.12668 5.31597 5.46629 5.48782 5.52698 5.74530 5.82235 5.92864 6.60978 7.23556 7.43323 8.73699 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.008314 B = 0.005320 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.859198 B = 5261.488248 C = 8020.543297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.119 4.119 5 C 0.121 3.879 6 N -0.524 5.524 7 C 0.256 3.744 8 C -0.555 4.555 9 H 0.057 0.943 10 C 0.030 3.970 11 N -0.914 5.914 12 Si 0.955 3.045 13 H -0.270 1.270 14 H -0.279 1.279 15 H -0.272 1.272 16 C 0.321 3.679 17 N -0.368 5.368 18 N -0.165 5.165 19 C -0.180 4.180 20 C 0.582 3.418 21 F -0.157 7.157 22 F -0.163 7.163 23 F -0.162 7.162 24 S 0.132 5.868 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.026 0.974 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -5.092 -6.156 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.207 4.207 4 C -0.158 4.158 5 C -0.003 4.003 6 N -0.234 5.234 7 C 0.136 3.864 8 C -0.594 4.594 9 H 0.075 0.925 10 C -0.172 4.172 11 N -0.552 5.552 12 Si 0.780 3.220 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.197 1.197 16 C -0.049 4.049 17 N -0.223 5.223 18 N -0.005 5.005 19 C -0.464 4.464 20 C 0.523 3.477 21 F -0.138 7.138 22 F -0.144 7.144 23 F -0.143 7.143 24 S 0.369 5.631 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.830 -4.760 -6.182 9.740 hybrid contribution 0.999 0.183 0.422 1.100 sum -4.831 -4.576 -5.760 8.801 Atomic orbital electron populations 1.21796 0.94166 1.01756 1.02269 1.21015 0.96533 0.96325 0.96809 1.21909 1.01060 0.95501 1.02206 1.21949 0.93830 1.00642 0.99382 1.21935 0.95110 0.97760 0.85460 1.47191 1.60851 0.98289 1.17056 1.19455 0.96006 0.91094 0.79841 1.21545 0.95392 1.35963 1.06498 0.92469 1.25582 1.02086 0.95048 0.94448 1.69981 1.37988 1.37722 1.09469 0.85584 0.79783 0.78900 0.77707 1.19517 1.20457 1.19696 1.27132 0.93250 0.92660 0.91888 1.71556 1.31182 0.95174 1.24401 1.70553 1.05894 1.07340 1.16691 1.28868 1.20611 0.99263 0.97680 1.16248 0.74573 0.81906 0.75015 1.93234 1.94960 1.72209 1.53395 1.93256 1.35638 1.96346 1.89199 1.93253 1.69190 1.92080 1.59799 1.86227 1.65973 0.96417 1.14480 0.92854 0.91264 0.92971 0.90597 0.92986 0.92876 0.91284 0.92694 0.92218 0.88822 0.89918 0.93431 0.95608 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 2 C -0.09 -1.89 2.92 -10.79 -0.03 -1.92 16 3 C -0.15 -3.07 8.95 71.98 0.64 -2.43 16 4 C -0.12 -3.25 5.01 30.59 0.15 -3.09 16 5 C 0.12 3.83 5.31 86.38 0.46 4.28 16 6 N -0.52 -20.09 2.56 -709.03 -1.82 -21.91 16 7 C 0.26 11.32 5.19 85.63 0.44 11.77 16 8 C -0.56 -27.10 9.39 25.60 0.24 -26.86 16 9 H 0.06 2.85 7.81 -2.91 -0.02 2.82 16 10 C 0.03 1.51 5.46 84.65 0.46 1.97 16 11 N -0.91 -47.67 13.29 21.45 0.28 -47.38 16 12 Si 0.96 39.94 29.54 68.60 2.03 41.96 16 13 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 14 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 C 0.32 12.45 8.04 179.13 1.44 13.89 16 17 N -0.37 -14.22 10.94 -55.84 -0.61 -14.83 16 18 N -0.16 -6.18 11.33 -47.71 -0.54 -6.72 16 19 C -0.18 -6.21 7.08 88.48 0.63 -5.58 16 20 C 0.58 17.15 3.57 71.24 0.25 17.41 16 21 F -0.16 -4.53 17.14 44.97 0.77 -3.76 16 22 F -0.16 -4.66 17.30 44.97 0.78 -3.88 16 23 F -0.16 -4.49 17.30 44.97 0.78 -3.71 16 24 S 0.13 4.83 22.25 -56.49 -1.26 3.57 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.16 6.57 -2.39 -0.02 1.14 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 2.94 6.49 -2.39 -0.02 2.92 16 35 H 0.08 2.59 7.67 -2.39 -0.02 2.57 16 36 H 0.05 2.17 8.07 -2.39 -0.02 2.15 16 37 H 0.03 1.22 7.16 -2.39 -0.02 1.21 16 38 H 0.27 13.46 8.31 -92.70 -0.77 12.69 16 Total: -1.00 -52.12 350.29 6.85 -45.27 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 1.09 Total: 3.98 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 5.35 Total: 7.41 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -2.68 Total: -90.84 kcal Atomic # 9 Polarization: -13.68 SS G_CDS: 2.33 Total: -11.35 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.26 Total: 3.57 kcal Total: -52.12 6.85 -45.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570636370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.937 kcal (2) G-P(sol) polarization free energy of solvation -52.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds