Wall clock time and date at job start Tue Mar 31 2020 14:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47141 * 2 1 4 4 C 1.52998 * 109.47392 * 239.99578 * 2 1 3 5 5 C 1.50708 * 109.46873 * 60.00273 * 4 2 1 6 6 O 1.21282 * 119.99710 * 0.02562 * 5 4 2 7 7 N 1.34769 * 119.99931 * 179.97438 * 5 4 2 8 8 C 1.39153 * 119.99904 * 185.83567 * 7 5 4 9 9 C 1.38608 * 120.20957 * 24.81028 * 8 7 5 10 10 C 1.38188 * 120.16781 * 179.74899 * 9 8 7 11 11 C 1.39003 * 120.60457 * 0.55159 * 10 9 8 12 12 Cl 1.73601 * 119.79166 * 179.72222 * 11 10 9 13 13 C 1.37542 * 120.42082 * 359.71073 * 11 10 9 14 14 C 1.40745 * 119.81362 * 0.02562 * 13 11 10 15 15 C 1.41065 * 120.29510 * 179.97438 * 14 13 11 16 16 H 1.07994 * 120.00116 * 184.24991 * 15 14 13 17 17 C 1.39953 * 119.99829 * 4.24275 * 15 14 13 18 18 N 1.30849 * 120.00273 * 324.59928 * 17 15 14 19 19 Si 1.86797 * 119.99549 * 144.59446 * 17 15 14 20 20 H 1.48501 * 109.47327 * 95.00227 * 19 17 15 21 21 H 1.48499 * 109.47096 * 214.99977 * 19 17 15 22 22 H 1.48503 * 109.47356 * 335.00417 * 19 17 15 23 23 C 1.53001 * 109.46995 * 120.00019 * 2 1 3 24 24 C 1.52995 * 117.49975 * 13.74223 * 23 2 1 25 25 C 1.53009 * 117.49795 * 305.08689 * 23 2 1 26 26 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47415 * 300.00050 * 1 2 3 28 28 H 1.09000 * 109.47063 * 60.00199 * 1 2 3 29 29 H 0.96697 * 113.99928 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47310 * 300.00474 * 4 2 1 31 31 H 1.09003 * 109.47219 * 179.97438 * 4 2 1 32 32 H 0.97000 * 120.00016 * 5.56405 * 7 5 4 33 33 H 1.07997 * 119.91289 * 0.02562 * 9 8 7 34 34 H 1.08001 * 119.69805 * 180.26046 * 10 9 8 35 35 H 1.07998 * 120.09430 * 180.02562 * 13 11 10 36 36 H 0.97004 * 119.99926 * 180.02562 * 18 17 15 37 37 H 1.09000 * 115.55180 * 159.42155 * 23 2 1 38 38 H 1.09000 * 117.49962 * 0.02562 * 24 23 2 39 39 H 1.09003 * 117.49875 * 145.01845 * 24 23 2 40 40 H 1.08997 * 117.49517 * 214.98168 * 25 23 2 41 41 H 1.08998 * 117.49867 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0109 -2.4797 6 8 0.8408 0.9755 -2.3684 7 7 1.8638 -0.4711 -3.7037 8 6 1.5033 0.2510 -4.8373 9 6 1.2912 1.6183 -4.7550 10 6 0.9383 2.3354 -5.8823 11 6 0.7805 1.6966 -7.1067 12 17 0.3297 2.6170 -8.5080 13 6 0.9796 0.3400 -7.2153 14 6 1.3448 -0.4067 -6.0796 15 6 1.5510 -1.7986 -6.1792 16 1 1.7637 -2.3778 -5.2929 17 6 1.4798 -2.4290 -7.4267 18 7 0.6210 -2.0130 -8.3219 19 14 2.6110 -3.8642 -7.8137 20 1 1.9083 -5.1402 -7.5251 21 1 2.9910 -3.8221 -9.2486 22 1 3.8331 -3.7715 -6.9750 23 6 2.0399 -0.7213 1.2493 24 6 1.0325 -1.5532 2.0454 25 6 1.5398 -0.2225 2.6066 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.9702 1.4236 0.0004 30 1 1.6766 -1.7489 -1.2492 31 1 3.1300 -0.7209 -1.2493 32 1 2.3532 -1.3036 -3.7943 33 1 1.4064 2.1252 -3.8083 34 1 0.7790 3.4012 -5.8104 35 1 0.8560 -0.1508 -8.1693 36 1 0.5714 -2.4502 -9.1865 37 1 3.0646 -1.0888 1.1946 38 1 0.0065 -1.5870 1.6790 39 1 1.3945 -2.4680 2.5147 40 1 2.2355 -0.2624 3.4448 41 1 0.8479 0.6197 2.6095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572540823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:46 Heat of formation + Delta-G solvation = -62.231312 kcal Electronic energy + Delta-G solvation = -24989.339836 eV Core-core repulsion = 21280.997009 eV Total energy + Delta-G solvation = -3708.342827 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.46015 -39.98816 -38.76345 -37.16907 -36.30662 -35.71917 -35.17021 -32.67168 -31.67082 -30.28079 -28.62220 -27.21257 -25.04899 -23.52953 -23.19558 -22.48169 -20.92285 -20.51815 -19.41624 -18.59807 -17.89185 -17.41579 -16.93484 -16.56048 -16.48283 -16.27274 -15.67058 -15.16584 -14.97038 -14.65759 -14.43639 -14.17447 -14.02872 -13.88352 -13.58459 -13.31285 -13.12014 -12.89023 -12.80963 -12.64267 -12.37571 -12.24841 -12.10832 -11.98878 -11.92577 -11.74673 -11.42939 -11.34638 -11.03888 -10.90563 -10.82803 -10.71064 -10.17633 -9.57736 -8.83758 -8.62448 -6.27652 0.72410 0.98500 1.40707 1.52194 1.57729 1.62721 1.93663 2.15805 2.43697 2.57259 2.87030 3.57461 3.60166 3.63862 3.74333 4.03013 4.11061 4.21998 4.32410 4.43199 4.54596 4.64287 4.65264 4.80600 4.86961 4.96803 4.98042 5.05075 5.07951 5.09372 5.27081 5.31002 5.33133 5.35781 5.49534 5.53785 5.84130 5.94959 6.08805 6.19359 6.51035 6.65582 6.88650 6.98667 7.00743 7.55176 8.09530 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003740 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.072863 B = 7484.746220 C = 9321.751199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.183 3.817 3 O -0.563 6.563 4 C -0.154 4.154 5 C 0.493 3.507 6 O -0.551 6.551 7 N -0.641 5.641 8 C 0.009 3.991 9 C -0.088 4.088 10 C -0.250 4.250 11 C -0.012 4.012 12 Cl -0.109 7.109 13 C -0.222 4.222 14 C 0.076 3.924 15 C -0.471 4.471 16 H 0.099 0.901 17 C 0.045 3.955 18 N -0.783 5.783 19 Si 0.982 3.018 20 H -0.258 1.258 21 H -0.271 1.271 22 H -0.248 1.248 23 C -0.185 4.185 24 C -0.173 4.173 25 C -0.170 4.170 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.380 0.620 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.412 0.588 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.145 0.855 36 H 0.296 0.704 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 -5.483 13.789 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.142 3.858 3 O -0.369 6.369 4 C -0.194 4.194 5 C 0.282 3.718 6 O -0.430 6.430 7 N -0.285 5.285 8 C -0.086 4.086 9 C -0.108 4.108 10 C -0.271 4.271 11 C -0.039 4.039 12 Cl -0.081 7.081 13 C -0.243 4.243 14 C 0.071 3.929 15 C -0.498 4.498 16 H 0.117 0.883 17 C -0.176 4.176 18 N -0.406 5.406 19 Si 0.801 3.199 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.171 1.171 23 C -0.203 4.203 24 C -0.210 4.210 25 C -0.207 4.207 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.229 0.771 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.250 0.750 33 H 0.140 0.860 34 H 0.126 0.874 35 H 0.162 0.838 36 H 0.107 0.893 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.986 -4.637 13.569 15.182 hybrid contribution 0.731 -0.489 -0.890 1.252 sum 5.718 -5.126 12.679 14.824 Atomic orbital electron populations 1.22078 0.94145 1.02285 1.02706 1.20253 0.93955 0.81298 0.90293 1.86690 1.27017 1.26321 1.96877 1.22432 1.04264 1.01786 0.90951 1.21293 0.80239 0.85331 0.84949 1.90609 1.37979 1.27951 1.86430 1.43026 1.55727 1.25737 1.03995 1.17678 1.12940 0.90771 0.87212 1.20752 0.99991 0.92600 0.97507 1.20265 1.16217 0.98904 0.91672 1.20871 1.04041 0.92195 0.86822 1.98233 1.91757 1.74805 1.43312 1.21784 1.10120 0.91168 1.01204 1.17535 0.91562 0.94179 0.89619 1.19644 1.42510 0.92197 0.95410 0.88345 1.27007 0.94382 1.01014 0.95179 1.69828 1.25797 1.37607 1.07336 0.85197 0.79286 0.76777 0.78660 1.18286 1.19617 1.17113 1.22962 1.00489 1.04786 0.92050 1.23204 0.99336 0.95441 1.03038 1.22892 1.03872 0.97801 0.96086 0.90194 0.92519 0.92566 0.77150 0.86096 0.85850 0.75048 0.85952 0.87381 0.83770 0.89257 0.85640 0.88504 0.87099 0.87474 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 7.18 71.98 0.52 -3.67 16 2 C 0.18 4.15 0.80 -10.80 -0.01 4.14 16 3 O -0.56 -15.11 11.85 -131.51 -1.56 -16.67 16 4 C -0.15 -3.38 4.95 29.85 0.15 -3.24 16 5 C 0.49 16.95 7.18 87.66 0.63 17.58 16 6 O -0.55 -23.51 10.12 14.43 0.15 -23.36 16 7 N -0.64 -23.96 5.11 -302.30 -1.54 -25.50 16 8 C 0.01 0.41 6.46 38.86 0.25 0.66 16 9 C -0.09 -4.26 8.70 22.35 0.19 -4.06 16 10 C -0.25 -12.13 9.82 22.44 0.22 -11.91 16 11 C -0.01 -0.62 6.31 22.29 0.14 -0.48 16 12 Cl -0.11 -4.70 28.94 -2.72 -0.08 -4.78 16 13 C -0.22 -11.60 8.83 22.72 0.20 -11.40 16 14 C 0.08 3.81 5.75 -21.18 -0.12 3.69 16 15 C -0.47 -21.95 8.64 23.38 0.20 -21.75 16 16 H 0.10 4.09 6.64 -2.91 -0.02 4.07 16 17 C 0.05 2.00 5.11 85.25 0.44 2.43 16 18 N -0.78 -37.02 10.56 21.83 0.23 -36.79 16 19 Si 0.98 32.64 29.67 68.60 2.04 34.68 16 20 H -0.26 -8.18 7.11 99.48 0.71 -7.47 16 21 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 22 H -0.25 -7.87 7.11 99.48 0.71 -7.17 16 23 C -0.18 -2.95 5.32 -10.79 -0.06 -3.01 16 24 C -0.17 -2.52 9.66 30.62 0.30 -2.23 16 25 C -0.17 -2.70 9.86 30.62 0.30 -2.40 16 26 H 0.08 1.81 6.74 -2.39 -0.02 1.79 16 27 H 0.06 1.47 6.96 -2.39 -0.02 1.45 16 28 H 0.06 2.01 5.51 -2.39 -0.01 1.99 16 29 H 0.38 7.21 9.05 -74.06 -0.67 6.54 16 30 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.41 13.08 7.20 -92.71 -0.67 12.41 16 33 H 0.12 5.93 5.78 -2.91 -0.02 5.92 16 34 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 35 H 0.15 7.77 5.09 -2.91 -0.01 7.75 16 36 H 0.30 12.49 8.30 -92.71 -0.77 11.72 16 37 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.54 5.89 -2.39 -0.01 1.52 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.58 7.28 -2.39 -0.02 1.56 16 Total: -1.00 -63.64 345.34 2.34 -61.29 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: -0.23 Total: 46.76 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 3.35 Total: -35.63 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -1.31 Total: -62.29 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.41 Total: -40.03 kcal Atomic # 14 Polarization: 32.64 SS G_CDS: 2.04 Total: 34.68 kcal Atomic # 17 Polarization: -4.70 SS G_CDS: -0.08 Total: -4.78 kcal Total: -63.64 2.34 -61.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572540823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.937 kcal (2) G-P(sol) polarization free energy of solvation -63.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds