Wall clock time and date at job start Tue Mar 31 2020 14:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46624 * 2 1 4 4 C 1.53001 * 109.47418 * 119.99676 * 2 1 3 5 5 C 1.50698 * 109.47074 * 176.84702 * 4 2 1 6 6 O 1.21285 * 119.99791 * 3.42688 * 5 4 2 7 7 N 1.34776 * 119.99749 * 183.43003 * 5 4 2 8 8 C 1.39149 * 119.99605 * 174.71577 * 7 5 4 9 9 C 1.38607 * 120.21758 * 34.02643 * 8 7 5 10 10 C 1.38186 * 120.17605 * 179.97438 * 9 8 7 11 11 C 1.39010 * 120.60199 * 0.02562 * 10 9 8 12 12 Cl 1.73595 * 119.78936 * 179.97438 * 11 10 9 13 13 C 1.37550 * 120.41937 * 359.74476 * 11 10 9 14 14 C 1.40738 * 119.80788 * 0.48629 * 13 11 10 15 15 C 1.41069 * 120.29166 * 179.78906 * 14 13 11 16 16 H 1.07997 * 120.00181 * 140.58863 * 15 14 13 17 17 C 1.39951 * 119.99945 * 320.86774 * 15 14 13 18 18 N 1.30851 * 120.00198 * 177.16761 * 17 15 14 19 19 Si 1.86802 * 120.00142 * 357.16984 * 17 15 14 20 20 H 1.48496 * 109.47252 * 90.63429 * 19 17 15 21 21 H 1.48494 * 109.47149 * 210.64061 * 19 17 15 22 22 H 1.48500 * 109.46771 * 330.63932 * 19 17 15 23 23 C 1.52998 * 109.46992 * 240.00159 * 2 1 3 24 24 C 1.53008 * 117.49839 * 128.74426 * 23 2 1 25 25 C 1.53001 * 117.50203 * 60.08525 * 23 2 1 26 26 H 1.09001 * 109.46865 * 304.86130 * 1 2 3 27 27 H 1.08997 * 109.47113 * 64.86420 * 1 2 3 28 28 H 1.09003 * 109.46835 * 184.86570 * 1 2 3 29 29 H 0.96706 * 113.99663 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46473 * 56.85057 * 4 2 1 31 31 H 1.08996 * 109.47199 * 296.85535 * 4 2 1 32 32 H 0.96992 * 120.00138 * 354.70568 * 7 5 4 33 33 H 1.07994 * 119.90864 * 359.97438 * 9 8 7 34 34 H 1.07995 * 119.70008 * 180.02562 * 10 9 8 35 35 H 1.07996 * 120.09493 * 180.25028 * 13 11 10 36 36 H 0.97005 * 120.00649 * 180.02562 * 18 17 15 37 37 H 1.08997 * 115.54855 * 274.41067 * 23 2 1 38 38 H 1.08997 * 117.49610 * 0.02562 * 24 23 2 39 39 H 1.08998 * 117.49258 * 145.01854 * 24 23 2 40 40 H 1.08994 * 117.50174 * 214.97896 * 25 23 2 41 41 H 1.09003 * 117.49601 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5451 -0.7892 1.2107 6 8 4.1533 -0.2542 0.3081 7 7 4.2150 -1.4445 2.1793 8 6 5.5944 -1.6020 2.0867 9 6 6.3723 -0.6116 1.5078 10 6 7.7422 -0.7687 1.4167 11 6 8.3566 -1.9175 1.9017 12 17 10.0790 -2.0932 1.7757 13 6 7.6089 -2.9138 2.4850 14 6 6.2118 -2.7742 2.5825 15 6 5.4347 -3.7916 3.1748 16 1 4.6020 -3.5333 3.8122 17 6 5.7462 -5.1359 2.9412 18 7 5.0603 -6.0792 3.5344 19 14 7.1414 -5.5835 1.7825 20 1 8.4069 -5.6955 2.5515 21 1 6.8435 -6.8825 1.1276 22 1 7.2831 -4.5282 0.7474 23 6 2.0400 -0.7212 -1.2493 24 6 3.0763 0.0041 -2.1102 25 6 1.6374 -0.1483 -2.6096 26 1 -0.3633 0.5874 0.8433 27 1 -0.3633 0.4365 -0.9303 28 1 -0.3633 -1.0240 0.0872 29 1 2.9703 1.4237 -0.0004 30 1 1.6314 -1.7313 1.2779 31 1 1.7236 -0.1758 2.1383 32 1 3.7356 -1.8062 2.9410 33 1 5.9066 0.2852 1.1270 34 1 8.3410 0.0080 0.9645 35 1 8.0921 -3.8023 2.8637 36 1 5.2765 -7.0109 3.3727 37 1 2.1254 -1.8045 -1.1647 38 1 3.3950 0.9948 -1.7863 39 1 3.8431 -0.6023 -2.5922 40 1 1.4582 -0.8547 -3.4201 41 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572540824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:49 Heat of formation + Delta-G solvation = -54.029063 kcal Electronic energy + Delta-G solvation = -25549.300504 eV Core-core repulsion = 21841.313353 eV Total energy + Delta-G solvation = -3707.987151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38780 -38.80814 -37.38624 -35.77245 -34.83419 -33.89156 -33.70055 -32.12759 -30.71262 -29.24311 -27.54884 -25.31859 -23.46270 -22.34896 -22.01110 -21.00771 -19.97095 -19.57145 -17.70183 -17.26855 -16.93115 -16.45734 -15.83166 -15.33412 -15.25845 -14.49614 -14.22379 -14.13206 -13.74903 -13.48751 -12.97072 -12.75691 -12.69464 -12.58829 -12.41636 -12.17628 -12.00136 -11.84945 -11.61487 -11.35569 -11.15087 -11.07954 -10.95815 -10.69745 -10.51309 -10.29413 -10.09127 -10.05493 -9.87856 -9.73110 -9.44504 -9.35268 -8.92624 -7.86335 -7.24629 -7.03331 -4.70498 2.05598 2.38363 2.94197 3.01350 3.05093 3.13244 3.22166 3.68432 3.87242 3.98334 4.32046 4.34099 4.70977 4.80844 4.94102 5.02380 5.21714 5.23760 5.44025 5.50404 5.58620 5.64740 5.78984 5.83907 5.86207 5.92141 5.99246 6.16859 6.20759 6.32465 6.37776 6.39270 6.43106 6.60555 6.91845 7.07218 7.10691 7.33999 7.39565 7.69822 7.86172 7.96118 8.09111 8.32899 8.56047 8.70908 9.97245 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.004353 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.451944 B = 6430.755813 C = 7498.163051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.182 3.818 3 O -0.565 6.565 4 C -0.169 4.169 5 C 0.506 3.494 6 O -0.534 6.534 7 N -0.639 5.639 8 C 0.049 3.951 9 C -0.072 4.072 10 C -0.207 4.207 11 C 0.004 3.996 12 Cl -0.116 7.116 13 C -0.208 4.208 14 C 0.091 3.909 15 C -0.452 4.452 16 H 0.093 0.907 17 C 0.088 3.912 18 N -0.815 5.815 19 Si 0.898 3.102 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.240 1.240 23 C -0.173 4.173 24 C -0.137 4.137 25 C -0.186 4.186 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.387 0.613 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.408 0.592 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.287 0.713 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 7.272 -4.840 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.140 3.860 3 O -0.376 6.376 4 C -0.209 4.209 5 C 0.294 3.706 6 O -0.412 6.412 7 N -0.281 5.281 8 C -0.045 4.045 9 C -0.093 4.093 10 C -0.227 4.227 11 C -0.023 4.023 12 Cl -0.087 7.087 13 C -0.229 4.229 14 C 0.086 3.914 15 C -0.482 4.482 16 H 0.111 0.889 17 C -0.130 4.130 18 N -0.440 5.440 19 Si 0.724 3.276 20 H -0.191 1.191 21 H -0.216 1.216 22 H -0.163 1.163 23 C -0.191 4.191 24 C -0.174 4.174 25 C -0.223 4.223 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.240 0.760 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.243 0.757 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.190 7.477 -5.407 11.111 hybrid contribution 1.215 -1.099 0.067 1.640 sum -4.975 6.377 -5.340 9.692 Atomic orbital electron populations 1.21732 0.92390 1.02292 1.02864 1.20249 0.93615 0.81761 0.90369 1.86384 1.29026 1.25493 1.96729 1.22454 0.93188 1.03943 1.01307 1.20554 0.89593 0.78966 0.81487 1.90572 1.69588 1.45946 1.35139 1.42933 1.06713 1.54843 1.23587 1.17740 0.81768 0.97211 1.07778 1.20755 0.92035 0.97647 0.98861 1.20259 0.94293 0.97990 1.10172 1.20680 0.81646 0.97318 1.02657 1.98280 1.15418 1.97859 1.97181 1.20842 0.93278 0.99801 1.08957 1.17469 0.90699 0.91393 0.91806 1.19115 1.13667 0.89282 1.26118 0.88908 1.25970 0.96231 0.95952 0.94895 1.69584 1.36791 1.01898 1.35743 0.86505 0.80687 0.78321 0.82065 1.19139 1.21621 1.16319 1.22826 1.05415 0.99265 0.91639 1.22672 0.91103 1.02040 1.01541 1.22995 0.99721 1.02891 0.96687 0.91916 0.91648 0.91139 0.76007 0.88001 0.88216 0.75658 0.85345 0.87202 0.86788 0.90288 0.88119 0.88443 0.89502 0.89614 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.76 37.16 0.33 -1.05 16 2 C 0.18 2.23 0.92 -90.62 -0.08 2.15 16 3 O -0.56 -7.79 12.12 -52.42 -0.64 -8.42 16 4 C -0.17 -2.06 4.98 -27.88 -0.14 -2.19 16 5 C 0.51 8.01 7.17 -10.99 -0.08 7.93 16 6 O -0.53 -9.25 8.68 -11.63 -0.10 -9.35 16 7 N -0.64 -11.19 5.03 -9.48 -0.05 -11.23 16 8 C 0.05 1.03 6.35 -83.18 -0.53 0.50 16 9 C -0.07 -1.46 8.69 -39.46 -0.34 -1.81 16 10 C -0.21 -4.16 9.82 -39.31 -0.39 -4.55 16 11 C 0.00 0.08 6.31 -39.55 -0.25 -0.17 16 12 Cl -0.12 -2.18 28.94 -51.86 -1.50 -3.68 16 13 C -0.21 -4.75 6.56 -38.89 -0.26 -5.00 16 14 C 0.09 2.09 5.05 -106.65 -0.54 1.55 16 15 C -0.45 -10.88 9.01 -37.87 -0.34 -11.22 16 16 H 0.09 2.24 7.32 -52.49 -0.38 1.85 16 17 C 0.09 2.15 5.51 -17.33 -0.10 2.05 16 18 N -0.82 -20.41 13.93 55.55 0.77 -19.63 16 19 Si 0.90 20.12 24.47 -169.99 -4.16 15.96 16 20 H -0.27 -5.84 6.82 56.52 0.39 -5.45 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.24 -5.60 6.42 56.52 0.36 -5.24 16 23 C -0.17 -2.27 3.97 -90.62 -0.36 -2.63 16 24 C -0.14 -1.87 7.94 -26.69 -0.21 -2.08 16 25 C -0.19 -2.21 9.62 -26.69 -0.26 -2.46 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.66 7.13 -51.93 -0.37 0.29 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.39 5.47 5.35 45.56 0.24 5.71 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.41 6.52 7.71 -40.82 -0.31 6.20 16 33 H 0.13 2.47 6.11 -52.49 -0.32 2.15 16 34 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.11 2.64 4.81 -52.49 -0.25 2.39 16 36 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 37 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 38 H 0.10 1.37 6.28 -51.93 -0.33 1.04 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.06 7.59 -51.93 -0.39 0.66 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -25.88 339.78 -8.78 -34.66 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -4.69 Total: 15.57 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -3.54 Total: -18.99 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.73 Total: -30.86 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.74 Total: -17.78 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.16 Total: 15.96 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.50 Total: -3.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -25.88 -8.78 -34.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572540824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.373 kcal (2) G-P(sol) polarization free energy of solvation -25.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds