Wall clock time and date at job start Tue Mar 31 2020 14:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46624 * 2 1 4 4 C 1.53001 * 109.47418 * 119.99676 * 2 1 3 5 5 C 1.50698 * 109.47074 * 176.84702 * 4 2 1 6 6 O 1.21285 * 119.99791 * 3.42688 * 5 4 2 7 7 N 1.34776 * 119.99749 * 183.43003 * 5 4 2 8 8 C 1.39149 * 119.99605 * 174.71577 * 7 5 4 9 9 C 1.38607 * 120.21758 * 34.02643 * 8 7 5 10 10 C 1.38186 * 120.17605 * 179.97438 * 9 8 7 11 11 C 1.39010 * 120.60199 * 0.02562 * 10 9 8 12 12 Cl 1.73595 * 119.78936 * 179.97438 * 11 10 9 13 13 C 1.37550 * 120.41937 * 359.74476 * 11 10 9 14 14 C 1.40738 * 119.80788 * 0.48629 * 13 11 10 15 15 C 1.41069 * 120.29166 * 179.78906 * 14 13 11 16 16 H 1.07997 * 120.00181 * 140.58863 * 15 14 13 17 17 C 1.39951 * 119.99945 * 320.86774 * 15 14 13 18 18 N 1.30851 * 120.00198 * 177.16761 * 17 15 14 19 19 Si 1.86802 * 120.00142 * 357.16984 * 17 15 14 20 20 H 1.48496 * 109.47252 * 90.63429 * 19 17 15 21 21 H 1.48494 * 109.47149 * 210.64061 * 19 17 15 22 22 H 1.48500 * 109.46771 * 330.63932 * 19 17 15 23 23 C 1.52998 * 109.46992 * 240.00159 * 2 1 3 24 24 C 1.53008 * 117.49839 * 128.74426 * 23 2 1 25 25 C 1.53001 * 117.50203 * 60.08525 * 23 2 1 26 26 H 1.09001 * 109.46865 * 304.86130 * 1 2 3 27 27 H 1.08997 * 109.47113 * 64.86420 * 1 2 3 28 28 H 1.09003 * 109.46835 * 184.86570 * 1 2 3 29 29 H 0.96706 * 113.99663 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46473 * 56.85057 * 4 2 1 31 31 H 1.08996 * 109.47199 * 296.85535 * 4 2 1 32 32 H 0.96992 * 120.00138 * 354.70568 * 7 5 4 33 33 H 1.07994 * 119.90864 * 359.97438 * 9 8 7 34 34 H 1.07995 * 119.70008 * 180.02562 * 10 9 8 35 35 H 1.07996 * 120.09493 * 180.25028 * 13 11 10 36 36 H 0.97005 * 120.00649 * 180.02562 * 18 17 15 37 37 H 1.08997 * 115.54855 * 274.41067 * 23 2 1 38 38 H 1.08997 * 117.49610 * 0.02562 * 24 23 2 39 39 H 1.08998 * 117.49258 * 145.01854 * 24 23 2 40 40 H 1.08994 * 117.50174 * 214.97896 * 25 23 2 41 41 H 1.09003 * 117.49601 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5451 -0.7892 1.2107 6 8 4.1533 -0.2542 0.3081 7 7 4.2150 -1.4445 2.1793 8 6 5.5944 -1.6020 2.0867 9 6 6.3723 -0.6116 1.5078 10 6 7.7422 -0.7687 1.4167 11 6 8.3566 -1.9175 1.9017 12 17 10.0790 -2.0932 1.7757 13 6 7.6089 -2.9138 2.4850 14 6 6.2118 -2.7742 2.5825 15 6 5.4347 -3.7916 3.1748 16 1 4.6020 -3.5333 3.8122 17 6 5.7462 -5.1359 2.9412 18 7 5.0603 -6.0792 3.5344 19 14 7.1414 -5.5835 1.7825 20 1 8.4069 -5.6955 2.5515 21 1 6.8435 -6.8825 1.1276 22 1 7.2831 -4.5282 0.7474 23 6 2.0400 -0.7212 -1.2493 24 6 3.0763 0.0041 -2.1102 25 6 1.6374 -0.1483 -2.6096 26 1 -0.3633 0.5874 0.8433 27 1 -0.3633 0.4365 -0.9303 28 1 -0.3633 -1.0240 0.0872 29 1 2.9703 1.4237 -0.0004 30 1 1.6314 -1.7313 1.2779 31 1 1.7236 -0.1758 2.1383 32 1 3.7356 -1.8062 2.9410 33 1 5.9066 0.2852 1.1270 34 1 8.3410 0.0080 0.9645 35 1 8.0921 -3.8023 2.8637 36 1 5.2765 -7.0109 3.3727 37 1 2.1254 -1.8045 -1.1647 38 1 3.3950 0.9948 -1.7863 39 1 3.8431 -0.6023 -2.5922 40 1 1.4582 -0.8547 -3.4201 41 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572540824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:49 Heat of formation + Delta-G solvation = -67.887600 kcal Electronic energy + Delta-G solvation = -25549.901455 eV Core-core repulsion = 21841.313353 eV Total energy + Delta-G solvation = -3708.588102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66176 -40.15850 -38.78717 -37.33687 -35.87105 -35.47307 -35.34069 -33.15106 -32.44898 -30.62136 -28.75541 -27.01989 -24.58021 -23.82189 -23.07377 -22.56941 -21.32015 -20.67156 -19.48004 -18.74024 -18.09789 -17.68626 -17.31148 -16.59385 -16.53587 -16.19278 -15.66130 -15.29420 -15.26503 -14.94198 -14.57636 -14.37031 -13.84057 -13.67815 -13.63744 -13.34726 -13.26860 -13.04536 -12.96629 -12.86488 -12.81622 -12.32164 -12.17458 -12.12929 -11.94344 -11.84696 -11.59790 -11.33045 -11.26048 -11.04681 -10.79076 -10.73777 -10.30052 -9.58846 -8.90349 -8.80497 -6.52729 0.41386 0.66023 1.23301 1.30182 1.33895 1.41416 1.73704 2.06593 2.35939 2.58606 2.97758 3.25887 3.35632 3.68343 3.84484 3.87240 4.13103 4.17077 4.22984 4.38790 4.44932 4.57640 4.68459 4.69207 4.73686 4.79762 4.84553 4.94296 4.98604 5.03809 5.18989 5.20184 5.33261 5.34882 5.38908 5.40352 5.47174 5.66988 5.76570 6.01096 6.23161 6.46133 6.72827 6.78098 6.81195 7.35768 8.19670 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.004353 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.451944 B = 6430.755813 C = 7498.163051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.179 3.821 3 O -0.572 6.572 4 C -0.161 4.161 5 C 0.505 3.495 6 O -0.547 6.547 7 N -0.644 5.644 8 C 0.059 3.941 9 C -0.081 4.081 10 C -0.191 4.191 11 C -0.012 4.012 12 Cl -0.095 7.095 13 C -0.219 4.219 14 C 0.070 3.930 15 C -0.467 4.467 16 H 0.082 0.918 17 C 0.060 3.940 18 N -0.850 5.850 19 Si 0.934 3.066 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.256 1.256 23 C -0.179 4.179 24 C -0.152 4.152 25 C -0.166 4.166 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.383 0.617 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.414 0.586 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.291 0.709 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 8.539 -5.634 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.138 3.862 3 O -0.382 6.382 4 C -0.201 4.201 5 C 0.294 3.706 6 O -0.426 6.426 7 N -0.286 5.286 8 C -0.036 4.036 9 C -0.102 4.102 10 C -0.211 4.211 11 C -0.039 4.039 12 Cl -0.066 7.066 13 C -0.240 4.240 14 C 0.066 3.934 15 C -0.497 4.497 16 H 0.100 0.900 17 C -0.155 4.155 18 N -0.478 5.478 19 Si 0.760 3.240 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.180 1.180 23 C -0.198 4.198 24 C -0.189 4.189 25 C -0.203 4.203 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.235 0.765 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.251 0.749 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.878 8.750 -6.203 12.741 hybrid contribution 1.488 -1.281 0.227 1.976 sum -5.391 7.469 -5.976 10.980 Atomic orbital electron populations 1.21754 0.90380 1.03561 1.03336 1.20428 0.94978 0.81020 0.89773 1.86391 1.28707 1.26417 1.96733 1.22506 0.89973 1.05289 1.02343 1.21244 0.91097 0.77696 0.80540 1.90569 1.70354 1.46246 1.35454 1.43049 1.05590 1.55449 1.24557 1.17929 0.83525 0.96196 1.05979 1.20970 0.92227 0.97959 0.99008 1.20625 0.94557 0.97809 1.08146 1.20774 0.82981 0.97292 1.02892 1.98280 1.13388 1.97836 1.97091 1.20897 0.93542 1.00072 1.09451 1.17600 0.90984 0.92069 0.92732 1.19098 1.13964 0.89673 1.26981 0.89982 1.26362 0.97298 0.96123 0.95673 1.69606 1.38294 1.02271 1.37600 0.85945 0.79612 0.77735 0.80658 1.18759 1.20962 1.17966 1.22877 1.05336 0.98785 0.92767 1.22599 0.91845 1.01677 1.02802 1.23018 0.98012 1.03046 0.96215 0.91137 0.91487 0.89550 0.76451 0.86443 0.86049 0.74909 0.84169 0.84813 0.87621 0.89870 0.89044 0.89006 0.90896 0.88484 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.76 71.98 0.63 -1.67 16 2 C 0.18 4.00 0.92 -10.79 -0.01 3.99 16 3 O -0.57 -14.66 12.12 -132.55 -1.61 -16.27 16 4 C -0.16 -3.55 4.98 29.85 0.15 -3.40 16 5 C 0.50 15.22 7.17 87.66 0.63 15.85 16 6 O -0.55 -18.30 8.68 13.39 0.12 -18.18 16 7 N -0.64 -21.92 5.03 -302.30 -1.52 -23.44 16 8 C 0.06 2.42 6.35 38.86 0.25 2.66 16 9 C -0.08 -3.15 8.69 22.35 0.19 -2.95 16 10 C -0.19 -7.32 9.82 22.44 0.22 -7.10 16 11 C -0.01 -0.51 6.31 22.29 0.14 -0.37 16 12 Cl -0.09 -3.39 28.94 -2.72 -0.08 -3.47 16 13 C -0.22 -9.91 6.56 22.72 0.15 -9.76 16 14 C 0.07 3.23 5.05 -21.18 -0.11 3.13 16 15 C -0.47 -22.80 9.01 23.38 0.21 -22.59 16 16 H 0.08 4.06 7.32 -2.91 -0.02 4.04 16 17 C 0.06 2.97 5.51 85.25 0.47 3.44 16 18 N -0.85 -43.37 13.93 21.83 0.30 -43.07 16 19 Si 0.93 41.68 24.47 68.60 1.68 43.36 16 20 H -0.26 -11.36 6.82 99.48 0.68 -10.68 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.26 -11.90 6.42 99.48 0.64 -11.26 16 23 C -0.18 -4.42 3.97 -10.79 -0.04 -4.46 16 24 C -0.15 -4.05 7.94 30.62 0.24 -3.80 16 25 C -0.17 -3.62 9.62 30.62 0.29 -3.33 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.15 7.13 -2.39 -0.02 1.13 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.38 10.35 5.35 -74.05 -0.40 9.95 16 30 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.41 12.97 7.71 -92.71 -0.71 12.26 16 33 H 0.14 5.13 6.11 -2.91 -0.02 5.11 16 34 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.11 4.90 4.81 -2.91 -0.01 4.88 16 36 H 0.29 13.70 8.30 -92.70 -0.77 12.93 16 37 H 0.09 2.43 8.11 -2.39 -0.02 2.41 16 38 H 0.09 2.52 6.28 -2.39 -0.02 2.51 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.10 2.04 7.59 -2.39 -0.02 2.02 16 Total: -1.00 -54.61 339.78 2.19 -52.42 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -0.12 Total: 39.01 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 3.42 Total: -30.36 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -1.22 Total: -66.51 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.49 Total: -34.45 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.68 Total: 43.36 kcal Atomic # 17 Polarization: -3.39 SS G_CDS: -0.08 Total: -3.47 kcal Total: -54.61 2.19 -52.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572540824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.470 kcal (2) G-P(sol) polarization free energy of solvation -54.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds