Wall clock time and date at job start Tue Mar 31 2020 13:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.32558 * 121.64534 * 94.71503 * 3 2 1 5 5 S 1.77232 * 105.32121 * 179.97438 * 4 3 2 6 6 C 1.72218 * 94.84348 * 0.29318 * 5 4 3 7 7 O 1.21830 * 127.05492 * 179.85722 * 6 5 4 8 8 N 1.34239 * 105.88431 * 359.82950 * 6 5 4 9 9 C 1.46495 * 121.38230 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47635 * 269.98210 * 9 8 6 11 11 O 1.21288 * 119.99550 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00311 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99941 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47392 * 90.00283 * 13 12 10 15 15 H 1.08005 * 119.99833 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00446 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99533 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00568 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46836 * 60.00012 * 18 16 14 20 20 H 1.48495 * 109.47589 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47539 * 300.00793 * 18 16 14 22 22 C 1.46505 * 119.99949 * 359.97438 * 12 10 9 23 23 C 1.52996 * 109.46828 * 89.99981 * 22 12 10 24 24 C 1.47208 * 109.46736 * 179.97438 * 23 22 12 25 25 N 6.63968 * 94.95949 * 250.34319 * 2 1 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 127.34526 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46866 * 29.98465 * 9 8 6 33 33 H 1.08993 * 109.47562 * 149.97501 * 9 8 6 34 34 H 1.09006 * 109.46892 * 209.99784 * 13 12 10 35 35 H 1.08997 * 109.47174 * 330.00118 * 13 12 10 36 36 H 0.97005 * 119.99616 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47048 * 209.99872 * 22 12 10 38 38 H 1.08996 * 109.47146 * 329.99901 * 22 12 10 39 39 H 1.09001 * 109.47217 * 299.99787 * 23 22 12 40 40 H 1.09008 * 109.47108 * 60.00392 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3516 2.0457 1.1247 5 16 2.8806 3.6627 0.6281 6 6 2.6275 3.3886 -1.0532 7 8 2.8207 4.1759 -1.9626 8 7 2.1743 2.1292 -1.1560 9 6 1.8464 1.5402 -2.4566 10 6 0.3989 1.8082 -2.7789 11 8 -0.2911 2.4296 -1.9986 12 7 -0.1290 1.3574 -3.9341 13 6 -1.5361 1.6184 -4.2476 14 6 -1.6507 2.9209 -4.9967 15 1 -0.7640 3.4970 -5.2169 16 6 -2.8872 3.3773 -5.4010 17 7 -3.9668 2.6755 -5.1333 18 14 -3.0294 4.9922 -6.3289 19 1 -2.2479 4.9094 -7.5891 20 1 -4.4556 5.2567 -6.6468 21 1 -2.4973 6.0947 -5.4883 22 6 0.7046 0.6073 -4.8769 23 6 0.6223 -0.8860 -4.5540 24 6 1.4595 -1.6397 -5.5016 25 7 2.1040 -2.2251 -6.2293 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.3010 1.6528 2.1294 32 1 2.4781 1.9841 -3.2261 33 1 2.0178 0.4644 -2.4220 34 1 -1.9271 0.8090 -4.8643 35 1 -2.1091 1.6797 -3.3224 36 1 -4.8369 2.9968 -5.4174 37 1 0.3491 0.7795 -5.8928 38 1 1.7388 0.9408 -4.7924 39 1 0.9778 -1.0582 -3.5380 40 1 -0.4120 -1.2196 -4.6385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580191440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:00 Heat of formation + Delta-G solvation = -7.222038 kcal Electronic energy + Delta-G solvation = -25617.670626 eV Core-core repulsion = 21946.049638 eV Total energy + Delta-G solvation = -3671.620988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25655 -39.06145 -37.59727 -36.98425 -35.40596 -33.56502 -32.99954 -31.49855 -30.99481 -28.44080 -26.88100 -24.91206 -24.16820 -23.11957 -22.54922 -20.58864 -18.90094 -18.00821 -17.80707 -17.33296 -16.86579 -16.48799 -15.84226 -15.43917 -15.09617 -14.84903 -14.79909 -14.52842 -14.24736 -14.16735 -13.71143 -13.53714 -13.22325 -13.08735 -12.65618 -12.56676 -12.44491 -12.08960 -11.97917 -11.88925 -11.51832 -11.35933 -11.13221 -11.09118 -10.95748 -10.90054 -10.67083 -10.25084 -10.02890 -9.92242 -9.78024 -9.06901 -8.51495 -8.02214 -7.90684 -6.14236 -4.18868 0.99585 1.42367 1.79812 2.20237 2.61409 2.70707 2.74278 3.00187 3.29237 3.33578 3.38035 3.49632 4.02503 4.32262 4.38771 4.57971 4.72712 4.80837 4.84438 4.99559 5.02838 5.12710 5.21533 5.25429 5.31171 5.34382 5.40189 5.66991 5.73510 5.85993 5.92851 6.04480 6.30200 6.72441 6.76424 7.20238 7.28963 7.38231 7.46494 7.81596 8.03489 8.09920 8.63353 8.86262 9.47266 10.93845 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.004956 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.162651 B = 5648.259177 C = 7222.085369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.067 4.067 3 C 0.118 3.882 4 C -0.242 4.242 5 S -0.005 6.005 6 C 0.489 3.511 7 O -0.468 6.468 8 N -0.513 5.513 9 C 0.073 3.927 10 C 0.495 3.505 11 O -0.512 6.512 12 N -0.591 5.591 13 C 0.247 3.753 14 C -0.532 4.532 15 H 0.058 0.942 16 C 0.065 3.935 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.112 3.888 23 C -0.050 4.050 24 C 0.215 3.785 25 N -0.440 5.440 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.190 0.810 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.038 0.962 35 H 0.047 0.953 36 H 0.265 0.735 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.846 -9.234 11.305 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.107 4.107 3 C 0.007 3.993 4 C -0.380 4.380 5 S 0.237 5.763 6 C 0.171 3.829 7 O -0.347 6.347 8 N -0.233 5.233 9 C -0.056 4.056 10 C 0.279 3.721 11 O -0.387 6.387 12 N -0.323 5.323 13 C 0.129 3.871 14 C -0.571 4.571 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.015 4.015 23 C -0.091 4.091 24 C -0.104 4.104 25 N -0.117 5.117 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.207 0.793 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.776 -8.149 10.675 18.536 hybrid contribution -0.954 0.054 -1.075 1.439 sum 11.822 -8.095 9.599 17.247 Atomic orbital electron populations 1.21924 0.92792 1.02401 1.04602 1.20563 0.97673 0.88566 1.03928 1.19390 0.98919 0.95963 0.85013 1.24751 1.16337 0.95796 1.01098 1.84993 1.72374 1.16904 1.01980 1.21498 0.82512 0.83339 0.95567 1.90979 1.54603 1.46592 1.42503 1.45563 1.57628 1.12817 1.07245 1.21950 0.97419 1.00932 0.85288 1.20336 0.88398 0.80718 0.82641 1.90748 1.61269 1.38624 1.48060 1.48215 1.14154 1.52731 1.17203 1.19390 0.73639 0.96607 0.97480 1.21363 0.93240 1.06224 1.36226 0.92387 1.24886 0.95521 0.97373 0.95983 1.69902 0.98353 1.38528 1.46430 0.86579 0.77002 0.83907 0.80134 1.20161 1.21127 1.20109 1.21396 0.96025 0.87606 0.96450 1.19884 0.99273 0.94721 0.95262 1.28982 0.93622 0.93676 0.94072 1.81178 1.10545 1.09784 1.10215 0.91765 0.91916 0.90657 0.88826 0.90446 0.79317 0.86261 0.86712 0.94446 0.93485 0.92561 0.88161 0.90697 0.87839 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.07 -0.53 5.66 -27.88 -0.16 -0.68 16 3 C 0.12 1.30 5.84 -82.51 -0.48 0.82 16 4 C -0.24 -2.46 11.23 28.82 0.32 -2.14 16 5 S -0.01 -0.07 22.97 -107.50 -2.47 -2.54 16 6 C 0.49 8.10 8.27 53.81 0.45 8.55 16 7 O -0.47 -9.37 17.55 5.07 0.09 -9.29 16 8 N -0.51 -7.12 2.09 -118.57 -0.25 -7.37 16 9 C 0.07 0.93 4.30 -5.20 -0.02 0.91 16 10 C 0.49 8.59 6.39 -10.99 -0.07 8.52 16 11 O -0.51 -11.31 14.62 5.55 0.08 -11.23 16 12 N -0.59 -10.07 2.46 -175.06 -0.43 -10.49 16 13 C 0.25 5.59 5.16 -5.19 -0.03 5.56 16 14 C -0.53 -14.09 9.39 -34.44 -0.32 -14.41 16 15 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 18 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.11 1.34 5.17 -4.04 -0.02 1.32 16 23 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 24 C 0.21 2.28 15.43 -20.80 -0.32 1.96 16 25 N -0.44 -5.95 18.53 42.11 0.78 -5.17 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.03 4.97 -51.93 -0.26 0.77 16 29 H 0.09 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.08 0.48 6.39 -51.93 -0.33 0.15 16 31 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.12 1.48 7.06 -51.93 -0.37 1.12 16 33 H 0.12 0.94 5.25 -51.93 -0.27 0.66 16 34 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 38 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 39 H 0.10 0.61 7.22 -51.93 -0.37 0.24 16 40 H 0.12 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -35.41 358.15 -6.46 -41.87 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.82 Total: -3.47 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -0.56 Total: 10.26 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.84 Total: -47.45 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.17 Total: -20.51 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.47 Total: -2.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.41 -6.46 -41.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580191440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.648 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds