Wall clock time and date at job start Tue Mar 31 2020 13:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.32558 * 121.64534 * 94.71503 * 3 2 1 5 5 S 1.77232 * 105.32121 * 179.97438 * 4 3 2 6 6 C 1.72218 * 94.84348 * 0.29318 * 5 4 3 7 7 O 1.21830 * 127.05492 * 179.85722 * 6 5 4 8 8 N 1.34239 * 105.88431 * 359.82950 * 6 5 4 9 9 C 1.46495 * 121.38230 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47635 * 269.98210 * 9 8 6 11 11 O 1.21288 * 119.99550 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00311 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99941 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47392 * 90.00283 * 13 12 10 15 15 H 1.08005 * 119.99833 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00446 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99533 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00568 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46836 * 60.00012 * 18 16 14 20 20 H 1.48495 * 109.47589 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47539 * 300.00793 * 18 16 14 22 22 C 1.46505 * 119.99949 * 359.97438 * 12 10 9 23 23 C 1.52996 * 109.46828 * 89.99981 * 22 12 10 24 24 C 1.47208 * 109.46736 * 179.97438 * 23 22 12 25 25 N 6.63968 * 94.95949 * 250.34319 * 2 1 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 31 31 H 1.08001 * 127.34526 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46866 * 29.98465 * 9 8 6 33 33 H 1.08993 * 109.47562 * 149.97501 * 9 8 6 34 34 H 1.09006 * 109.46892 * 209.99784 * 13 12 10 35 35 H 1.08997 * 109.47174 * 330.00118 * 13 12 10 36 36 H 0.97005 * 119.99616 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47048 * 209.99872 * 22 12 10 38 38 H 1.08996 * 109.47146 * 329.99901 * 22 12 10 39 39 H 1.09001 * 109.47217 * 299.99787 * 23 22 12 40 40 H 1.09008 * 109.47108 * 60.00392 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3516 2.0457 1.1247 5 16 2.8806 3.6627 0.6281 6 6 2.6275 3.3886 -1.0532 7 8 2.8207 4.1759 -1.9626 8 7 2.1743 2.1292 -1.1560 9 6 1.8464 1.5402 -2.4566 10 6 0.3989 1.8082 -2.7789 11 8 -0.2911 2.4296 -1.9986 12 7 -0.1290 1.3574 -3.9341 13 6 -1.5361 1.6184 -4.2476 14 6 -1.6507 2.9209 -4.9967 15 1 -0.7640 3.4970 -5.2169 16 6 -2.8872 3.3773 -5.4010 17 7 -3.9668 2.6755 -5.1333 18 14 -3.0294 4.9922 -6.3289 19 1 -2.2479 4.9094 -7.5891 20 1 -4.4556 5.2567 -6.6468 21 1 -2.4973 6.0947 -5.4883 22 6 0.7046 0.6073 -4.8769 23 6 0.6223 -0.8860 -4.5540 24 6 1.4595 -1.6397 -5.5016 25 7 2.1040 -2.2251 -6.2293 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.3010 1.6528 2.1294 32 1 2.4781 1.9841 -3.2261 33 1 2.0178 0.4644 -2.4220 34 1 -1.9271 0.8090 -4.8643 35 1 -2.1091 1.6797 -3.3224 36 1 -4.8369 2.9968 -5.4174 37 1 0.3491 0.7795 -5.8928 38 1 1.7388 0.9408 -4.7924 39 1 0.9778 -1.0582 -3.5380 40 1 -0.4120 -1.2196 -4.6385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580191440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:00 Heat of formation + Delta-G solvation = -30.775791 kcal Electronic energy + Delta-G solvation = -25618.691993 eV Core-core repulsion = 21946.049638 eV Total energy + Delta-G solvation = -3672.642356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.33170 -40.38532 -38.74103 -37.99902 -36.73024 -34.94896 -34.36192 -32.56894 -32.13434 -29.77908 -28.32475 -26.00093 -25.35226 -24.51816 -23.60530 -21.66439 -20.17437 -18.96691 -18.90846 -18.44619 -18.39077 -18.00051 -17.11390 -16.66922 -16.50559 -16.01152 -15.93661 -15.66556 -15.41597 -15.07501 -14.80361 -14.45728 -14.36546 -14.28833 -13.96445 -13.63994 -13.55500 -13.38862 -13.22530 -12.97830 -12.81543 -12.77187 -12.56926 -12.40020 -12.20815 -11.94913 -11.88232 -11.73382 -11.64721 -11.22102 -11.10186 -10.61706 -10.33632 -9.54899 -8.92135 -8.22509 -6.33388 -0.09905 0.45073 0.88238 1.12989 1.34955 1.38314 1.44499 1.62127 1.72047 1.82610 1.87762 2.27190 2.40723 3.06761 3.11791 3.50949 3.62376 3.75134 3.92704 4.08511 4.12216 4.19387 4.44408 4.47725 4.53153 4.61314 4.77967 4.83277 5.03198 5.06975 5.10678 5.12295 5.22167 5.30789 5.51621 5.58321 5.75997 5.82344 6.09608 6.25282 6.60646 6.65537 6.76012 7.26296 7.40958 8.83632 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.004956 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.162651 B = 5648.259177 C = 7222.085369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C 0.099 3.901 4 C -0.223 4.223 5 S -0.006 6.006 6 C 0.463 3.537 7 O -0.525 6.525 8 N -0.513 5.513 9 C 0.079 3.921 10 C 0.492 3.508 11 O -0.568 6.568 12 N -0.591 5.591 13 C 0.265 3.735 14 C -0.544 4.544 15 H 0.044 0.956 16 C 0.018 3.982 17 N -0.920 5.920 18 Si 0.948 3.052 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.287 1.287 22 C 0.105 3.895 23 C -0.036 4.036 24 C 0.245 3.755 25 N -0.489 5.489 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.231 0.769 32 H 0.124 0.876 33 H 0.170 0.830 34 H 0.042 0.958 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.144 0.856 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.251 -11.487 12.557 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.100 4.100 3 C -0.010 4.010 4 C -0.360 4.360 5 S 0.237 5.763 6 C 0.146 3.854 7 O -0.409 6.409 8 N -0.232 5.232 9 C -0.049 4.049 10 C 0.279 3.721 11 O -0.447 6.447 12 N -0.322 5.322 13 C 0.144 3.856 14 C -0.583 4.583 15 H 0.063 0.937 16 C -0.182 4.182 17 N -0.559 5.559 18 Si 0.774 3.226 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.213 1.213 22 C -0.020 4.020 23 C -0.077 4.077 24 C -0.072 4.072 25 N -0.167 5.167 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.150 0.850 30 H 0.120 0.880 31 H 0.247 0.753 32 H 0.141 0.859 33 H 0.187 0.813 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.162 0.838 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.210 -10.469 11.932 21.305 hybrid contribution -1.419 0.761 -1.346 2.098 sum 12.791 -9.708 10.587 19.234 Atomic orbital electron populations 1.21886 0.94634 1.03036 1.02076 1.20735 0.95684 0.86556 1.07055 1.20058 0.99309 0.97559 0.84116 1.25390 1.14620 0.93243 1.02706 1.84962 1.71888 1.19591 0.99830 1.22022 0.82992 0.83976 0.96382 1.90928 1.57206 1.48269 1.44494 1.45684 1.56683 1.12282 1.08569 1.22065 0.93430 1.04094 0.85325 1.21100 0.89979 0.79304 0.81694 1.90719 1.63096 1.41016 1.49842 1.48030 1.12635 1.53285 1.18206 1.18802 0.76790 0.95092 0.94922 1.21707 0.92741 1.07655 1.36183 0.93749 1.25586 0.95511 1.00115 0.96967 1.69981 0.98645 1.39847 1.47471 0.85765 0.77412 0.80148 0.79278 1.18839 1.20188 1.21334 1.21628 0.96337 0.89401 0.94616 1.19845 0.99564 0.91598 0.96723 1.29079 0.92466 0.92617 0.93058 1.81227 1.12343 1.11418 1.11695 0.89472 0.93126 0.94570 0.85026 0.87994 0.75293 0.85855 0.81270 0.94003 0.97356 0.92470 0.89581 0.87990 0.83802 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.89 71.98 0.71 -2.00 16 2 C -0.06 -0.65 5.66 29.85 0.17 -0.48 16 3 C 0.10 1.87 5.84 40.71 0.24 2.10 16 4 C -0.22 -3.80 11.23 66.67 0.75 -3.05 16 5 S -0.01 -0.15 22.97 -56.49 -1.30 -1.45 16 6 C 0.46 15.43 8.27 129.88 1.07 16.51 16 7 O -0.53 -21.94 17.55 -4.76 -0.08 -22.02 16 8 N -0.51 -13.46 2.09 -647.51 -1.35 -14.81 16 9 C 0.08 1.85 4.30 85.63 0.37 2.22 16 10 C 0.49 16.91 6.39 87.66 0.56 17.47 16 11 O -0.57 -25.88 14.62 -3.06 -0.04 -25.92 16 12 N -0.59 -19.87 2.46 -826.15 -2.03 -21.90 16 13 C 0.26 12.28 5.16 85.63 0.44 12.72 16 14 C -0.54 -29.59 9.39 25.60 0.24 -29.35 16 15 H 0.04 2.48 7.81 -2.91 -0.02 2.45 16 16 C 0.02 1.00 5.46 84.65 0.46 1.46 16 17 N -0.92 -52.76 13.29 21.45 0.28 -52.48 16 18 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 C 0.10 2.31 5.17 86.38 0.45 2.76 16 23 C -0.04 -0.50 6.03 28.79 0.17 -0.33 16 24 C 0.25 4.51 15.43 89.46 1.38 5.89 16 25 N -0.49 -12.28 18.53 19.99 0.37 -11.91 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.04 0.93 4.97 -2.39 -0.01 0.92 16 29 H 0.13 0.51 8.08 -2.39 -0.02 0.49 16 30 H 0.10 0.61 6.39 -2.39 -0.02 0.59 16 31 H 0.23 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.12 2.85 7.06 -2.38 -0.02 2.83 16 33 H 0.17 1.92 5.25 -2.39 -0.01 1.91 16 34 H 0.04 1.89 8.07 -2.38 -0.02 1.87 16 35 H 0.01 0.45 7.42 -2.39 -0.02 0.43 16 36 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 37 H 0.09 2.18 8.07 -2.39 -0.02 2.16 16 38 H 0.10 1.73 6.44 -2.39 -0.02 1.71 16 39 H 0.14 0.90 7.22 -2.39 -0.02 0.88 16 40 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -84.44 358.15 5.97 -78.47 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: 1.08 Total: -0.63 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 7.01 Total: 25.92 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -2.73 Total: -101.10 kcal Atomic # 8 Polarization: -47.82 SS G_CDS: -0.13 Total: -47.94 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.30 Total: -1.45 kcal Total: -84.44 5.97 -78.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580191440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.695 kcal (2) G-P(sol) polarization free energy of solvation -84.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds