Wall clock time and date at job start Tue Mar 31 2020 13:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 C 1.52997 * 109.46988 * 239.99624 * 2 1 3 5 5 C 1.53001 * 109.46769 * 119.99660 * 2 1 3 6 6 N 1.46503 * 109.47051 * 64.41581 * 5 2 1 7 7 C 1.46501 * 120.00167 * 87.81288 * 6 5 2 8 8 C 1.50695 * 109.47356 * 94.95940 * 7 6 5 9 9 H 1.08004 * 120.00173 * 355.03497 * 8 7 6 10 10 C 1.37874 * 120.00032 * 175.03519 * 8 7 6 11 11 N 1.31508 * 120.00137 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99893 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47282 * 90.00124 * 12 10 8 14 14 H 1.48502 * 109.47221 * 209.99987 * 12 10 8 15 15 H 1.48503 * 109.47194 * 329.99928 * 12 10 8 16 16 C 1.38316 * 119.99862 * 267.80856 * 6 5 2 17 17 N 1.31630 * 127.50377 * 179.71026 * 16 6 5 18 18 C 1.31296 * 116.79096 * 179.78379 * 17 16 6 19 19 C 1.50692 * 121.06227 * 180.25462 * 18 17 16 20 20 F 1.39906 * 109.47315 * 195.27010 * 19 18 17 21 21 F 1.39895 * 109.47326 * 315.27024 * 19 18 17 22 22 F 1.39899 * 109.47398 * 75.27194 * 19 18 17 23 23 N 1.30129 * 117.87525 * 0.54158 * 18 17 16 24 24 S 1.69955 * 105.76335 * 359.71457 * 23 18 17 25 25 H 1.09002 * 109.47049 * 303.64790 * 1 2 3 26 26 H 1.09003 * 109.46685 * 63.64609 * 1 2 3 27 27 H 1.08998 * 109.47023 * 183.64623 * 1 2 3 28 28 H 1.09002 * 109.47186 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46928 * 299.99601 * 3 2 1 30 30 H 1.08999 * 109.47417 * 59.99774 * 3 2 1 31 31 H 1.09001 * 109.47449 * 299.99953 * 4 2 1 32 32 H 1.08994 * 109.47366 * 60.00670 * 4 2 1 33 33 H 1.09002 * 109.46748 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.47166 * 304.41146 * 5 2 1 35 35 H 1.09002 * 109.47011 * 184.41396 * 5 2 1 36 36 H 1.08997 * 109.46738 * 214.95633 * 7 6 5 37 37 H 1.08996 * 109.47087 * 334.95608 * 7 6 5 38 38 H 0.97000 * 120.00322 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.6403 -2.1297 1.1974 7 6 2.4968 -3.1099 0.5251 8 6 3.3927 -3.7733 1.5391 9 1 3.3878 -3.4377 2.5656 10 6 4.2186 -4.8088 1.1563 11 7 4.2243 -5.2179 -0.0936 12 14 5.3297 -5.6308 2.4131 13 1 4.6097 -6.7672 3.0421 14 1 6.5536 -6.1328 1.7385 15 1 5.7089 -4.6458 3.4577 16 6 0.4544 -2.5341 1.7831 17 7 -0.0473 -3.7505 1.8199 18 6 -1.1946 -3.8990 2.4408 19 6 -1.8528 -5.2505 2.5456 20 9 -3.1886 -5.0902 2.9293 21 9 -1.7982 -5.8933 1.3043 22 9 -1.1828 -6.0228 3.5005 23 7 -1.7480 -2.8408 2.9578 24 16 -0.6914 -1.5539 2.6170 25 1 -0.3633 0.5694 0.8555 26 1 -0.3633 0.4562 -0.9209 27 1 -0.3633 -1.0256 0.0654 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.6135 -0.2550 2.1375 35 1 3.1271 -0.6532 1.2898 36 1 1.8757 -3.8634 0.0408 37 1 3.1071 -2.6057 -0.2242 38 1 4.8056 -5.9461 -0.3630 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581834889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:55 Heat of formation + Delta-G solvation = -97.902506 kcal Electronic energy + Delta-G solvation = -26344.237259 eV Core-core repulsion = 22126.827330 eV Total energy + Delta-G solvation = -4217.409929 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.94733 -47.47743 -47.42053 -39.91794 -38.56770 -35.08796 -32.83899 -31.32408 -28.38494 -27.94198 -27.32452 -27.01977 -25.82120 -23.78892 -21.93555 -19.88506 -19.35964 -18.67456 -18.36357 -17.76178 -17.21068 -16.83127 -16.20682 -15.38691 -15.05053 -14.55318 -14.44645 -14.24172 -14.07771 -13.93746 -13.84354 -13.57538 -13.54855 -13.37987 -12.93273 -12.71832 -12.53028 -12.12133 -11.93841 -11.74533 -11.54871 -11.50609 -11.37523 -11.19107 -11.00828 -10.81348 -10.67227 -10.50762 -10.48910 -10.22533 -9.65245 -9.25855 -9.16283 -8.58449 -7.46447 -6.20296 -4.27523 0.88493 1.22837 1.64738 2.62738 2.75558 3.22949 3.25719 3.30400 3.33370 3.82171 4.31544 4.34609 4.53819 4.74373 4.75987 4.95060 5.14081 5.22516 5.42921 5.48724 5.61008 5.70495 5.75987 5.79609 5.84052 5.96504 6.03291 6.11368 6.20974 6.36139 6.43887 6.58518 7.08858 7.26257 7.54484 7.73092 7.95768 8.02710 8.74233 9.38414 10.86475 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.008544 B = 0.006992 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3276.203660 B = 4003.349279 C = 6441.801043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.122 3.878 6 N -0.512 5.512 7 C 0.245 3.755 8 C -0.535 4.535 9 H 0.059 0.941 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.898 3.102 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.373 3.627 17 N -0.548 5.548 18 C 0.234 3.766 19 C 0.566 3.434 20 F -0.162 7.162 21 F -0.157 7.157 22 F -0.161 7.161 23 N -0.488 5.488 24 S 0.175 5.825 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 10.071 0.740 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.002 4.002 6 N -0.223 5.223 7 C 0.126 3.874 8 C -0.574 4.574 9 H 0.077 0.923 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.005 4.005 17 N -0.285 5.285 18 C -0.060 4.060 19 C 0.506 3.494 20 F -0.144 7.144 21 F -0.138 7.138 22 F -0.143 7.143 23 N -0.325 5.325 24 S 0.311 5.689 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.757 10.709 1.091 13.268 hybrid contribution 1.034 -1.636 0.311 1.960 sum -6.723 9.073 1.402 11.379 Atomic orbital electron populations 1.22082 0.94463 1.02042 1.01940 1.21066 0.96047 0.95695 0.96124 1.21800 1.01291 0.94509 1.01894 1.22011 1.01404 1.01161 0.95588 1.21936 1.02089 0.78832 0.97315 1.47087 1.14719 1.09177 1.51290 1.19865 0.88697 0.86284 0.92579 1.21314 1.22404 1.17930 0.95730 0.92318 1.24866 0.97022 0.96100 0.95468 1.69901 1.38815 1.27924 1.15981 0.86494 0.79858 0.79920 0.81184 1.20337 1.21009 1.19880 1.25099 0.92516 0.90394 0.92511 1.67026 1.12038 1.20585 1.28843 1.22644 0.91204 0.94820 0.97335 1.16750 0.75813 0.82140 0.74681 1.93227 1.34424 1.95607 1.91119 1.93259 1.96059 1.82587 1.41906 1.93255 1.80327 1.76359 1.64332 1.77289 1.24972 0.99832 1.30446 1.84669 1.12340 1.18599 1.53258 0.92175 0.92282 0.92831 0.92200 0.92265 0.92548 0.91360 0.93044 0.92025 0.90944 0.88093 0.93031 0.93071 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 7.10 37.16 0.26 -1.51 16 2 C -0.09 -1.06 0.85 -154.51 -0.13 -1.19 16 3 C -0.14 -1.29 8.47 37.16 0.31 -0.97 16 4 C -0.14 -1.94 7.09 37.16 0.26 -1.68 16 5 C 0.12 1.73 4.60 -4.04 -0.02 1.71 16 6 N -0.51 -9.52 2.05 -176.55 -0.36 -9.89 16 7 C 0.25 5.59 3.91 -5.20 -0.02 5.56 16 8 C -0.53 -13.82 9.36 -34.44 -0.32 -14.14 16 9 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 10 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 12 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 C 0.37 7.17 6.45 -86.36 -0.56 6.61 16 17 N -0.55 -11.78 10.07 -14.57 -0.15 -11.93 16 18 C 0.23 4.59 6.98 -159.03 -1.11 3.48 16 19 C 0.57 10.16 3.53 36.00 0.13 10.29 16 20 F -0.16 -2.66 16.96 2.25 0.04 -2.62 16 21 F -0.16 -2.85 17.24 2.25 0.04 -2.81 16 22 F -0.16 -2.94 17.30 2.25 0.04 -2.90 16 23 N -0.49 -9.03 11.73 29.54 0.35 -8.69 16 24 S 0.17 2.83 20.05 -107.50 -2.16 0.67 16 25 H 0.06 0.65 7.59 -51.93 -0.39 0.26 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.78 5.69 -51.93 -0.30 0.48 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.11 6.02 -51.93 -0.31 0.80 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.84 7.81 -51.93 -0.41 0.43 16 34 H 0.07 0.91 7.15 -51.93 -0.37 0.54 16 35 H 0.10 1.43 8.09 -51.93 -0.42 1.01 16 36 H 0.05 1.34 7.86 -51.93 -0.41 0.94 16 37 H 0.05 1.15 5.99 -51.93 -0.31 0.84 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -28.25 336.38 -7.28 -35.53 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -4.58 Total: -4.40 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -1.29 Total: 9.91 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.57 Total: -54.36 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.12 Total: -8.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.16 Total: 0.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.25 -7.28 -35.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581834889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.368 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds