Wall clock time and date at job start Tue Mar 31 2020 13:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 C 1.52997 * 109.46988 * 239.99624 * 2 1 3 5 5 C 1.53001 * 109.46769 * 119.99660 * 2 1 3 6 6 N 1.46503 * 109.47051 * 64.41581 * 5 2 1 7 7 C 1.46501 * 120.00167 * 87.81288 * 6 5 2 8 8 C 1.50695 * 109.47356 * 94.95940 * 7 6 5 9 9 H 1.08004 * 120.00173 * 355.03497 * 8 7 6 10 10 C 1.37874 * 120.00032 * 175.03519 * 8 7 6 11 11 N 1.31508 * 120.00137 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99893 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47282 * 90.00124 * 12 10 8 14 14 H 1.48502 * 109.47221 * 209.99987 * 12 10 8 15 15 H 1.48503 * 109.47194 * 329.99928 * 12 10 8 16 16 C 1.38316 * 119.99862 * 267.80856 * 6 5 2 17 17 N 1.31630 * 127.50377 * 179.71026 * 16 6 5 18 18 C 1.31296 * 116.79096 * 179.78379 * 17 16 6 19 19 C 1.50692 * 121.06227 * 180.25462 * 18 17 16 20 20 F 1.39906 * 109.47315 * 195.27010 * 19 18 17 21 21 F 1.39895 * 109.47326 * 315.27024 * 19 18 17 22 22 F 1.39899 * 109.47398 * 75.27194 * 19 18 17 23 23 N 1.30129 * 117.87525 * 0.54158 * 18 17 16 24 24 S 1.69955 * 105.76335 * 359.71457 * 23 18 17 25 25 H 1.09002 * 109.47049 * 303.64790 * 1 2 3 26 26 H 1.09003 * 109.46685 * 63.64609 * 1 2 3 27 27 H 1.08998 * 109.47023 * 183.64623 * 1 2 3 28 28 H 1.09002 * 109.47186 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46928 * 299.99601 * 3 2 1 30 30 H 1.08999 * 109.47417 * 59.99774 * 3 2 1 31 31 H 1.09001 * 109.47449 * 299.99953 * 4 2 1 32 32 H 1.08994 * 109.47366 * 60.00670 * 4 2 1 33 33 H 1.09002 * 109.46748 * 180.02562 * 4 2 1 34 34 H 1.08996 * 109.47166 * 304.41146 * 5 2 1 35 35 H 1.09002 * 109.47011 * 184.41396 * 5 2 1 36 36 H 1.08997 * 109.46738 * 214.95633 * 7 6 5 37 37 H 1.08996 * 109.47087 * 334.95608 * 7 6 5 38 38 H 0.97000 * 120.00322 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 7 1.6403 -2.1297 1.1974 7 6 2.4968 -3.1099 0.5251 8 6 3.3927 -3.7733 1.5391 9 1 3.3878 -3.4377 2.5656 10 6 4.2186 -4.8088 1.1563 11 7 4.2243 -5.2179 -0.0936 12 14 5.3297 -5.6308 2.4131 13 1 4.6097 -6.7672 3.0421 14 1 6.5536 -6.1328 1.7385 15 1 5.7089 -4.6458 3.4577 16 6 0.4544 -2.5341 1.7831 17 7 -0.0473 -3.7505 1.8199 18 6 -1.1946 -3.8990 2.4408 19 6 -1.8528 -5.2505 2.5456 20 9 -3.1886 -5.0902 2.9293 21 9 -1.7982 -5.8933 1.3043 22 9 -1.1828 -6.0228 3.5005 23 7 -1.7480 -2.8408 2.9578 24 16 -0.6914 -1.5539 2.6170 25 1 -0.3633 0.5694 0.8555 26 1 -0.3633 0.4562 -0.9209 27 1 -0.3633 -1.0256 0.0654 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 1.6135 -0.2550 2.1375 35 1 3.1271 -0.6532 1.2898 36 1 1.8757 -3.8634 0.0408 37 1 3.1071 -2.6057 -0.2242 38 1 4.8056 -5.9461 -0.3630 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581834889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:55 Heat of formation + Delta-G solvation = -112.370145 kcal Electronic energy + Delta-G solvation = -26344.864622 eV Core-core repulsion = 22126.827330 eV Total energy + Delta-G solvation = -4218.037293 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.36802 -48.88137 -48.85533 -41.39186 -39.80556 -36.41599 -34.75691 -32.83235 -30.06127 -29.36661 -28.25811 -28.11413 -27.12939 -25.54908 -23.45207 -21.40683 -20.64513 -19.92670 -19.79921 -19.11479 -18.75636 -18.61946 -17.69080 -16.84055 -16.69838 -15.94803 -15.76112 -15.64314 -15.42075 -15.26502 -15.15748 -15.00104 -14.96823 -14.57675 -14.40697 -14.34849 -13.76613 -13.54414 -13.12674 -13.05113 -12.92314 -12.76381 -12.65674 -12.64718 -12.55203 -12.45772 -12.10481 -11.80681 -11.66052 -11.59972 -11.43911 -10.74610 -10.62833 -10.57418 -8.95221 -8.20766 -6.36445 -0.58532 -0.21378 0.22414 1.20842 1.26722 1.36682 1.40473 1.47683 1.85904 2.33177 2.42430 2.93285 3.08883 3.10343 3.64681 3.74270 3.86577 3.98152 4.23228 4.35549 4.49145 4.64322 4.72154 4.83130 4.90860 4.93048 5.04002 5.07720 5.17557 5.18533 5.33475 5.41634 5.50216 5.57118 5.79003 5.93858 6.01311 6.55162 6.72631 7.32627 8.82775 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.008544 B = 0.006992 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3276.203660 B = 4003.349279 C = 6441.801043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.142 4.142 5 C 0.114 3.886 6 N -0.514 5.514 7 C 0.269 3.731 8 C -0.541 4.541 9 H 0.052 0.948 10 C 0.021 3.979 11 N -0.919 5.919 12 Si 0.954 3.046 13 H -0.285 1.285 14 H -0.276 1.276 15 H -0.264 1.264 16 C 0.349 3.651 17 N -0.592 5.592 18 C 0.224 3.776 19 C 0.570 3.430 20 F -0.151 7.151 21 F -0.161 7.161 22 F -0.164 7.164 23 N -0.502 5.502 24 S 0.264 5.736 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.011 0.989 37 H 0.052 0.948 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 12.392 1.717 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.189 4.189 4 C -0.199 4.199 5 C -0.008 4.008 6 N -0.225 5.225 7 C 0.147 3.853 8 C -0.580 4.580 9 H 0.070 0.930 10 C -0.179 4.179 11 N -0.558 5.558 12 Si 0.779 3.221 13 H -0.211 1.211 14 H -0.202 1.202 15 H -0.188 1.188 16 C -0.028 4.028 17 N -0.330 5.330 18 C -0.071 4.071 19 C 0.510 3.490 20 F -0.133 7.133 21 F -0.143 7.143 22 F -0.146 7.146 23 N -0.340 5.340 24 S 0.401 5.599 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.929 13.076 2.082 15.433 hybrid contribution 1.005 -2.266 0.008 2.479 sum -6.924 10.810 2.090 13.006 Atomic orbital electron populations 1.22075 0.94208 1.00569 1.03519 1.21048 0.96171 0.97039 0.94030 1.21767 1.01520 0.92194 1.03401 1.21961 1.00955 0.99533 0.97466 1.22290 1.02456 0.76627 0.99420 1.46955 1.14371 1.10106 1.51100 1.19257 0.87912 0.86241 0.91912 1.21604 1.22540 1.18015 0.95884 0.92986 1.25606 0.98470 0.96860 0.96993 1.70001 1.39762 1.28557 1.17499 0.85624 0.78361 0.78783 0.79329 1.21129 1.20156 1.18814 1.25293 0.93212 0.91092 0.93230 1.67010 1.13256 1.22771 1.29970 1.22654 0.91088 0.95513 0.97798 1.16647 0.76143 0.81729 0.74481 1.93243 1.33505 1.95529 1.90983 1.93246 1.96120 1.82637 1.42248 1.93243 1.80517 1.76410 1.64412 1.77112 1.26152 1.00507 1.30223 1.84216 1.09462 1.15483 1.50739 0.90528 0.90783 0.95715 0.91909 0.90989 0.90831 0.94903 0.91245 0.92645 0.88781 0.88123 0.97131 0.93058 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 7.10 71.98 0.51 -2.66 16 2 C -0.08 -1.80 0.85 -52.18 -0.04 -1.84 16 3 C -0.13 -2.00 8.47 71.98 0.61 -1.39 16 4 C -0.14 -3.75 7.09 71.98 0.51 -3.24 16 5 C 0.11 3.06 4.60 86.38 0.40 3.45 16 6 N -0.51 -19.19 2.05 -712.48 -1.46 -20.65 16 7 C 0.27 12.64 3.91 85.63 0.33 12.98 16 8 C -0.54 -28.47 9.36 25.60 0.24 -28.23 16 9 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 10 C 0.02 1.14 5.46 84.65 0.46 1.60 16 11 N -0.92 -52.11 13.29 21.44 0.28 -51.83 16 12 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 16 C 0.35 13.33 6.45 178.86 1.15 14.48 16 17 N -0.59 -25.85 10.07 -200.02 -2.01 -27.86 16 18 C 0.22 8.75 6.98 139.39 0.97 9.72 16 19 C 0.57 20.52 3.53 71.23 0.25 20.77 16 20 F -0.15 -4.86 16.96 44.97 0.76 -4.09 16 21 F -0.16 -5.98 17.24 44.97 0.78 -5.20 16 22 F -0.16 -6.01 17.30 44.97 0.78 -5.24 16 23 N -0.50 -17.95 11.73 -60.44 -0.71 -18.66 16 24 S 0.26 7.98 20.05 -56.49 -1.13 6.85 16 25 H 0.08 1.38 7.59 -2.39 -0.02 1.36 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.02 0.67 5.69 -2.39 -0.01 0.66 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.03 1.09 6.02 -2.39 -0.01 1.08 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.50 7.81 -2.39 -0.02 1.48 16 34 H 0.09 2.10 7.15 -2.39 -0.02 2.08 16 35 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 36 H 0.01 0.58 7.86 -2.39 -0.02 0.57 16 37 H 0.05 2.40 5.99 -2.39 -0.01 2.38 16 38 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -61.89 336.38 5.80 -56.09 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: 1.10 Total: -0.22 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 5.40 Total: 25.64 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -3.90 Total: -119.00 kcal Atomic # 9 Polarization: -16.85 SS G_CDS: 2.32 Total: -14.53 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -1.13 Total: 6.85 kcal Total: -61.89 5.80 -56.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581834889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.280 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds