Wall clock time and date at job start Tue Mar 31 2020 14:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47259 * 2 1 4 4 H 1.09004 * 109.47006 * 177.79112 * 3 2 1 5 5 C 1.50696 * 109.47487 * 57.78648 * 3 2 1 6 6 H 1.08003 * 120.00405 * 240.00211 * 5 3 2 7 7 C 1.37885 * 119.99762 * 59.99466 * 5 3 2 8 8 N 1.31512 * 119.99802 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99808 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47065 * 90.00523 * 9 7 5 11 11 H 1.48500 * 109.46735 * 210.00410 * 9 7 5 12 12 H 1.48497 * 109.47318 * 330.00288 * 9 7 5 13 13 N 1.46902 * 109.46855 * 297.78937 * 3 2 1 14 14 C 1.46904 * 110.99877 * 273.70187 * 13 3 2 15 15 C 1.50704 * 109.47222 * 175.41330 * 14 13 3 16 16 C 1.38207 * 120.00085 * 104.99806 * 15 14 13 17 17 C 1.38431 * 119.99700 * 179.97438 * 16 15 14 18 18 F 1.35095 * 119.99705 * 179.97438 * 17 16 15 19 19 C 1.38473 * 119.99950 * 359.97438 * 17 16 15 20 20 C 1.50699 * 119.99608 * 179.97438 * 19 17 16 21 21 F 1.39901 * 109.47052 * 180.02562 * 20 19 17 22 22 F 1.39898 * 109.47643 * 300.00513 * 20 19 17 23 23 F 1.39904 * 109.46877 * 60.00871 * 20 19 17 24 24 C 1.38156 * 120.00235 * 0.02562 * 19 17 16 25 25 C 1.38426 * 119.99833 * 284.72240 * 15 14 13 26 26 F 1.35102 * 119.99735 * 0.02562 * 25 15 14 27 27 H 1.08999 * 109.47293 * 294.33772 * 1 2 3 28 28 H 1.09002 * 109.46910 * 54.33542 * 1 2 3 29 29 H 1.08999 * 109.47160 * 174.33121 * 1 2 3 30 30 H 1.08996 * 109.46992 * 239.99735 * 2 1 3 31 31 H 1.08998 * 109.46947 * 120.00071 * 2 1 3 32 32 H 0.97006 * 119.99761 * 179.97438 * 8 7 5 33 33 H 1.00907 * 111.00069 * 149.75267 * 13 3 2 34 34 H 1.09002 * 109.47121 * 295.40989 * 14 13 3 35 35 H 1.08996 * 109.47412 * 55.41033 * 14 13 3 36 36 H 1.08001 * 120.00228 * 359.97438 * 16 15 14 37 37 H 1.08001 * 120.00114 * 179.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0396 5 6 1.4935 2.1686 1.2020 6 1 0.8768 3.0452 1.0691 7 6 1.7806 1.7137 2.4716 8 7 2.5318 0.6465 2.6335 9 14 1.1025 2.6134 3.9617 10 1 -0.2194 2.0429 4.3251 11 1 2.0397 2.4572 5.1029 12 1 0.9483 4.0552 3.6415 13 7 1.5945 2.1193 -1.2253 14 6 2.5355 1.8841 -2.3286 15 6 1.9906 2.4970 -3.5929 16 6 2.5300 3.6729 -4.0791 17 6 2.0297 4.2355 -5.2408 18 9 2.5566 5.3852 -5.7158 19 6 0.9893 3.6198 -5.9160 20 6 0.4443 4.2326 -7.1803 21 9 -0.5937 3.4357 -7.6750 22 9 -0.0433 5.5146 -6.9047 23 9 1.4638 4.3165 -8.1348 24 6 0.4501 2.4443 -5.4299 25 6 0.9536 1.8791 -4.2704 26 9 0.4298 0.7269 -3.7979 27 1 -0.3634 0.4235 0.9363 28 1 -0.3633 0.5992 -0.8349 29 1 -0.3633 -1.0226 -0.1015 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.7341 0.3266 3.5267 33 1 1.4640 3.1071 -1.0657 34 1 3.4968 2.3390 -2.0894 35 1 2.6667 0.8116 -2.4719 36 1 3.3417 4.1529 -3.5527 37 1 -0.3617 1.9643 -5.9563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583271297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:10 Heat of formation + Delta-G solvation = -232.384712 kcal Electronic energy + Delta-G solvation = -27558.994936 eV Core-core repulsion = 22749.620283 eV Total energy + Delta-G solvation = -4809.374652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.35845 -50.24586 -49.93705 -48.78688 -48.76928 -40.40707 -38.09281 -35.20022 -33.50594 -32.07018 -31.37360 -29.03832 -27.38336 -25.30956 -24.82070 -24.37674 -22.66037 -20.93423 -19.94789 -19.75395 -19.65394 -18.73951 -18.26388 -18.10920 -17.20714 -17.10386 -16.82288 -16.47743 -15.93178 -15.75072 -15.61698 -15.54590 -15.32835 -15.18821 -15.18296 -15.07451 -14.91419 -14.85498 -14.34639 -14.06397 -13.82218 -13.80447 -13.45405 -13.29040 -12.94887 -12.81112 -12.63976 -12.40398 -12.27012 -11.92401 -11.60926 -11.29502 -10.81207 -10.55022 -10.50216 -9.81268 -9.05104 -8.08188 -6.19335 -0.61391 -0.26592 1.38276 1.43354 1.46014 1.53696 1.90717 2.40981 2.44316 2.62834 2.82410 3.12689 3.20894 3.21842 3.34714 3.49855 3.79933 3.84859 4.21033 4.34653 4.47211 4.52316 4.62436 4.72801 4.80514 4.83857 4.96023 4.99523 5.32870 5.40012 5.43972 5.58105 5.73816 5.82557 5.90991 6.29620 6.44963 6.76563 7.02489 7.49260 8.96830 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.003066 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.527707 B = 9130.174516 C = 9575.474580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C 0.225 3.775 4 H -0.025 1.025 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.675 5.675 14 C 0.094 3.906 15 C -0.048 4.048 16 C -0.112 4.112 17 C 0.136 3.864 18 F -0.124 7.124 19 C -0.202 4.202 20 C 0.521 3.479 21 F -0.167 7.167 22 F -0.175 7.175 23 F -0.173 7.173 24 C -0.075 4.075 25 C 0.107 3.893 26 F -0.125 7.125 27 H 0.029 0.971 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.260 0.740 33 H 0.337 0.663 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.174 0.826 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 5.553 -19.048 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.116 3.884 4 H -0.008 1.008 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.555 5.555 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.306 5.306 14 C -0.035 4.035 15 C -0.050 4.050 16 C -0.131 4.131 17 C 0.116 3.884 18 F -0.102 7.102 19 C -0.205 4.205 20 C 0.466 3.534 21 F -0.149 7.149 22 F -0.156 7.156 23 F -0.155 7.155 24 C -0.093 4.093 25 C 0.087 3.913 26 F -0.104 7.104 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.154 0.846 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.192 0.808 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.230 4.944 -19.116 19.871 hybrid contribution 0.479 0.843 1.129 1.488 sum -1.751 5.786 -17.987 18.976 Atomic orbital electron populations 1.21287 0.96278 0.98285 1.00491 1.21305 0.96097 0.97792 0.98421 1.18909 0.91582 0.92038 0.85825 1.00769 1.21430 1.31399 1.12014 0.91212 0.92364 1.25552 0.95365 0.95665 1.01355 1.70009 1.38409 1.24311 1.22725 0.85678 0.78003 0.79294 0.79379 1.20586 1.21340 1.19230 1.60606 1.47219 1.16451 1.06362 1.20874 0.94254 1.00595 0.87800 1.20064 0.94368 0.94355 0.96223 1.21084 1.02243 0.95121 0.94686 1.17204 0.93473 0.83633 0.94099 1.91576 1.85028 1.46038 1.87607 1.19786 1.02150 1.00196 0.98330 1.17830 0.75813 0.76196 0.83524 1.93196 1.59327 1.73483 1.88864 1.93243 1.88297 1.40359 1.93710 1.93242 1.59629 1.96105 1.66481 1.20907 1.00278 0.93511 0.94653 1.17395 0.95087 0.84867 0.93956 1.91577 1.85084 1.45810 1.87881 0.95198 0.92742 0.95082 0.95952 0.92538 0.93076 0.84593 0.93005 0.90446 0.80824 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 9.45 71.98 0.68 -3.90 16 2 C -0.10 -4.52 5.58 30.60 0.17 -4.35 16 3 C 0.22 10.44 2.30 44.17 0.10 10.54 16 4 H -0.03 -1.30 7.83 -2.39 -0.02 -1.32 16 5 C -0.52 -26.58 7.33 25.60 0.19 -26.39 16 6 H 0.06 2.92 7.60 -2.91 -0.02 2.90 16 7 C 0.02 1.05 5.30 84.66 0.45 1.50 16 8 N -0.92 -50.57 11.34 21.45 0.24 -50.33 16 9 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.68 -25.17 5.51 -499.45 -2.75 -27.91 16 14 C 0.09 2.82 5.27 85.56 0.45 3.27 16 15 C -0.05 -1.19 5.44 -19.83 -0.11 -1.30 16 16 C -0.11 -2.30 9.65 22.31 0.22 -2.09 16 17 C 0.14 2.84 7.13 22.37 0.16 2.99 16 18 F -0.12 -2.69 16.46 44.97 0.74 -1.95 16 19 C -0.20 -4.09 5.38 -19.83 -0.11 -4.20 16 20 C 0.52 10.35 3.03 71.24 0.22 10.56 16 21 F -0.17 -3.09 15.97 44.97 0.72 -2.37 16 22 F -0.17 -3.77 17.05 44.97 0.77 -3.00 16 23 F -0.17 -3.58 17.05 44.97 0.77 -2.81 16 24 C -0.07 -1.48 9.41 22.31 0.21 -1.27 16 25 C 0.11 2.61 7.24 22.37 0.16 2.77 16 26 F -0.13 -3.60 16.75 44.97 0.75 -2.85 16 27 H 0.03 1.39 7.37 -2.39 -0.02 1.37 16 28 H 0.05 2.25 7.51 -2.39 -0.02 2.24 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.02 0.95 7.44 -2.39 -0.02 0.93 16 31 H 0.06 2.97 6.13 -2.39 -0.01 2.96 16 32 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 33 H 0.34 12.23 8.24 -89.69 -0.74 11.49 16 34 H 0.05 1.47 7.95 -2.39 -0.02 1.45 16 35 H 0.08 2.48 7.34 -2.39 -0.02 2.46 16 36 H 0.17 2.90 8.00 -2.91 -0.02 2.87 16 37 H 0.18 2.77 7.15 -2.91 -0.02 2.74 16 Total: -1.00 -55.45 332.50 6.46 -49.00 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.40 Total: 10.06 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 2.79 Total: -11.85 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -2.51 Total: -78.25 kcal Atomic # 9 Polarization: -16.74 SS G_CDS: 3.75 Total: -12.99 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -55.45 6.46 -49.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583271297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.387 kcal (2) G-P(sol) polarization free energy of solvation -55.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds