Wall clock time and date at job start Tue Mar 31 2020 14:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 H 1.09004 * 109.47206 * 185.17378 * 3 2 1 5 5 C 1.50704 * 109.47271 * 305.16988 * 3 2 1 6 6 H 1.07991 * 119.99979 * 119.99661 * 5 3 2 7 7 C 1.37875 * 119.99717 * 300.00083 * 5 3 2 8 8 N 1.31513 * 120.00632 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99905 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47133 * 89.99727 * 9 7 5 11 11 H 1.48496 * 109.47724 * 210.00232 * 9 7 5 12 12 H 1.48504 * 109.47091 * 330.00128 * 9 7 5 13 13 N 1.46896 * 109.47073 * 65.17289 * 3 2 1 14 14 C 1.46898 * 111.00309 * 86.39368 * 13 3 2 15 15 C 1.50698 * 109.47114 * 174.80897 * 14 13 3 16 16 C 1.38203 * 120.00343 * 105.00358 * 15 14 13 17 17 C 1.38426 * 119.99904 * 179.97438 * 16 15 14 18 18 F 1.35108 * 119.99435 * 179.97438 * 17 16 15 19 19 C 1.38463 * 120.00333 * 359.97438 * 17 16 15 20 20 C 1.50706 * 120.00088 * 179.97438 * 19 17 16 21 21 F 1.39900 * 109.47078 * 180.02562 * 20 19 17 22 22 F 1.39902 * 109.47052 * 300.00467 * 20 19 17 23 23 F 1.39902 * 109.46966 * 60.00233 * 20 19 17 24 24 C 1.38161 * 120.00224 * 0.02562 * 19 17 16 25 25 C 1.38435 * 119.99868 * 284.72012 * 15 14 13 26 26 F 1.35104 * 119.99795 * 0.03057 * 25 15 14 27 27 H 1.08999 * 109.47476 * 63.10972 * 1 2 3 28 28 H 1.09001 * 109.47161 * 183.11250 * 1 2 3 29 29 H 1.09001 * 109.46973 * 303.10875 * 1 2 3 30 30 H 1.09005 * 109.46621 * 240.00451 * 2 1 3 31 31 H 1.08993 * 109.47191 * 120.00378 * 2 1 3 32 32 H 0.96999 * 120.00533 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99635 * 322.43541 * 13 3 2 34 34 H 1.09000 * 109.46935 * 294.80755 * 14 13 3 35 35 H 1.08996 * 109.46883 * 54.80788 * 14 13 3 36 36 H 1.08004 * 119.99685 * 359.97438 * 16 15 14 37 37 H 1.07996 * 120.00397 * 179.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4440 -0.0927 5 6 1.4358 2.1890 -1.1615 6 1 0.8267 3.0628 -0.9836 7 6 1.6608 1.7562 -2.4510 8 7 2.4021 0.6917 -2.6676 9 14 0.9113 2.6809 -3.8907 10 1 1.8525 3.7360 -4.3452 11 1 0.6520 1.7351 -5.0057 12 1 -0.3663 3.3071 -3.4656 13 7 1.6549 2.0980 1.2570 14 6 2.6496 1.8463 2.3082 15 6 2.2887 2.6352 3.5405 16 6 1.7408 1.9944 4.6355 17 6 1.4098 2.7190 5.7675 18 9 0.8737 2.0925 6.8378 19 6 1.6283 4.0859 5.8030 20 6 1.2674 4.8749 7.0353 21 9 1.5779 6.2239 6.8327 22 9 -0.1024 4.7448 7.2878 23 9 1.9915 4.3884 8.1291 24 6 2.1761 4.7266 4.7084 25 6 2.5116 4.0010 3.5778 26 9 3.0520 4.6266 2.5092 27 1 -0.3634 0.4648 -0.9165 28 1 -0.3633 -1.0262 0.0558 29 1 -0.3633 0.5613 0.8608 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.5606 0.3874 -3.5749 33 1 0.7356 1.8042 1.5511 34 1 2.6631 0.7832 2.5485 35 1 3.6350 2.1519 1.9567 36 1 1.5708 0.9281 4.6079 37 1 2.3461 5.7928 4.7359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583271298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:13 Heat of formation + Delta-G solvation = -217.839074 kcal Electronic energy + Delta-G solvation = -27495.294147 eV Core-core repulsion = 22686.550240 eV Total energy + Delta-G solvation = -4808.743906 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.47282 -49.31792 -48.83104 -47.91887 -47.86923 -39.42040 -36.70083 -33.76816 -31.91880 -30.64220 -30.19868 -27.52631 -25.95145 -23.98010 -23.43302 -23.27547 -21.58760 -19.43823 -19.01572 -18.85540 -18.76717 -17.52374 -17.25548 -16.49145 -16.14071 -15.89315 -15.45234 -14.95805 -14.87138 -14.76697 -14.72502 -14.45261 -14.30771 -14.20530 -14.03109 -13.98566 -13.71418 -13.33745 -12.97459 -12.86559 -12.70698 -12.45555 -12.19923 -11.94224 -11.70186 -11.37641 -10.94072 -10.76323 -10.59568 -10.08095 -9.94952 -9.66443 -9.56017 -9.09732 -8.81909 -8.39717 -7.43547 -6.03109 -4.04756 0.35175 0.66127 2.28170 2.87228 3.30361 3.30478 3.37200 3.40915 3.54036 3.75219 4.08791 4.10115 4.31660 4.40874 4.51028 4.76301 5.10326 5.20041 5.29121 5.38675 5.46450 5.58343 5.73619 5.94361 6.02878 6.24826 6.28502 6.40794 6.47628 6.78898 7.12017 7.15534 7.40663 7.59458 7.80986 8.16285 8.36055 8.48772 9.00450 9.59168 11.03961 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003088 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.763982 B = 9064.062014 C = 9614.033731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.035 0.965 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.089 3.911 15 C -0.043 4.043 16 C -0.124 4.124 17 C 0.136 3.864 18 F -0.124 7.124 19 C -0.204 4.204 20 C 0.517 3.483 21 F -0.173 7.173 22 F -0.171 7.171 23 F -0.172 7.172 24 C -0.088 4.088 25 C 0.121 3.879 26 F -0.110 7.110 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.011 0.989 32 H 0.260 0.740 33 H 0.330 0.670 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 4.260 18.077 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.110 3.890 4 H 0.053 0.947 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.040 4.040 15 C -0.044 4.044 16 C -0.144 4.144 17 C 0.117 3.883 18 F -0.102 7.102 19 C -0.207 4.207 20 C 0.463 3.537 21 F -0.154 7.154 22 F -0.152 7.152 23 F -0.153 7.153 24 C -0.107 4.107 25 C 0.101 3.899 26 F -0.088 7.088 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.113 0.887 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.173 0.827 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.055 4.779 17.757 18.389 hybrid contribution -0.641 -0.390 -0.380 0.841 sum -0.697 4.389 17.377 17.937 Atomic orbital electron populations 1.21564 0.97568 0.97976 1.01413 1.22127 0.95109 1.00926 1.00416 1.19255 0.96191 0.88659 0.84920 0.94679 1.21021 1.30703 1.11539 0.89491 0.91940 1.24895 0.95510 0.95132 0.98738 1.69866 1.39012 1.23924 1.20797 0.86557 0.79641 0.79532 0.82038 1.20765 1.21458 1.19921 1.60916 1.03342 1.63422 1.03042 1.20958 0.98789 0.95741 0.88516 1.20351 0.94921 0.92760 0.96416 1.20992 1.00809 1.01660 0.90918 1.17151 0.97219 0.88788 0.85191 1.91575 1.83131 1.82205 1.53273 1.19701 1.11552 0.93240 0.96225 1.17909 0.75000 0.77593 0.83206 1.93183 1.92795 1.34487 1.94918 1.93247 1.31501 1.95644 1.94838 1.93239 1.77685 1.87710 1.56710 1.20812 0.97487 1.01732 0.90620 1.17246 0.98233 0.90092 0.84355 1.91627 1.82407 1.81816 1.52907 0.91537 0.95801 0.95129 0.88689 0.97060 0.93049 0.85169 0.94061 0.89382 0.82672 0.82361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.39 37.16 0.35 -2.20 16 2 C -0.15 -3.18 5.51 -26.73 -0.15 -3.32 16 3 C 0.22 4.98 2.34 -68.86 -0.16 4.82 16 4 H 0.04 0.90 7.69 -51.93 -0.40 0.50 16 5 C -0.49 -12.65 7.41 -34.44 -0.26 -12.90 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.53 5.26 -17.82 -0.09 1.43 16 8 N -0.90 -24.40 11.38 55.43 0.63 -23.77 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.68 -12.93 6.20 -109.22 -0.68 -13.61 16 14 C 0.09 1.39 5.33 -4.98 -0.03 1.36 16 15 C -0.04 -0.56 5.44 -104.56 -0.57 -1.13 16 16 C -0.12 -1.41 9.64 -39.52 -0.38 -1.79 16 17 C 0.14 1.58 7.13 -39.43 -0.28 1.30 16 18 F -0.12 -1.46 16.46 2.25 0.04 -1.43 16 19 C -0.20 -2.33 5.38 -104.56 -0.56 -2.89 16 20 C 0.52 5.74 3.03 36.01 0.11 5.85 16 21 F -0.17 -1.82 15.97 2.25 0.04 -1.78 16 22 F -0.17 -2.02 17.05 2.25 0.04 -1.98 16 23 F -0.17 -1.96 17.05 2.25 0.04 -1.92 16 24 C -0.09 -0.99 9.41 -39.52 -0.37 -1.36 16 25 C 0.12 1.61 7.24 -39.42 -0.29 1.33 16 26 F -0.11 -1.71 16.75 2.25 0.04 -1.67 16 27 H 0.07 1.48 7.16 -51.93 -0.37 1.11 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.55 6.33 -51.93 -0.33 0.22 16 30 H 0.09 2.36 6.23 -51.93 -0.32 2.04 16 31 H 0.01 0.21 7.54 -51.93 -0.39 -0.18 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.33 6.03 6.55 -39.29 -0.26 5.77 16 34 H 0.04 0.59 7.38 -51.93 -0.38 0.21 16 35 H 0.09 1.44 7.86 -51.93 -0.41 1.03 16 36 H 0.16 1.47 8.00 -52.48 -0.42 1.05 16 37 H 0.16 1.48 7.15 -52.49 -0.38 1.11 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -26.52 330.37 -6.20 -32.72 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.63 Total: 2.14 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.68 Total: -9.50 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.05 Total: -37.38 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.19 Total: -8.77 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.52 -6.20 -32.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583271298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.119 kcal (2) G-P(sol) polarization free energy of solvation -26.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds