Wall clock time and date at job start Tue Mar 31 2020 14:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 H 1.09004 * 109.47206 * 185.17378 * 3 2 1 5 5 C 1.50704 * 109.47271 * 305.16988 * 3 2 1 6 6 H 1.07991 * 119.99979 * 119.99661 * 5 3 2 7 7 C 1.37875 * 119.99717 * 300.00083 * 5 3 2 8 8 N 1.31513 * 120.00632 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99905 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47133 * 89.99727 * 9 7 5 11 11 H 1.48496 * 109.47724 * 210.00232 * 9 7 5 12 12 H 1.48504 * 109.47091 * 330.00128 * 9 7 5 13 13 N 1.46896 * 109.47073 * 65.17289 * 3 2 1 14 14 C 1.46898 * 111.00309 * 86.39368 * 13 3 2 15 15 C 1.50698 * 109.47114 * 174.80897 * 14 13 3 16 16 C 1.38203 * 120.00343 * 105.00358 * 15 14 13 17 17 C 1.38426 * 119.99904 * 179.97438 * 16 15 14 18 18 F 1.35108 * 119.99435 * 179.97438 * 17 16 15 19 19 C 1.38463 * 120.00333 * 359.97438 * 17 16 15 20 20 C 1.50706 * 120.00088 * 179.97438 * 19 17 16 21 21 F 1.39900 * 109.47078 * 180.02562 * 20 19 17 22 22 F 1.39902 * 109.47052 * 300.00467 * 20 19 17 23 23 F 1.39902 * 109.46966 * 60.00233 * 20 19 17 24 24 C 1.38161 * 120.00224 * 0.02562 * 19 17 16 25 25 C 1.38435 * 119.99868 * 284.72012 * 15 14 13 26 26 F 1.35104 * 119.99795 * 0.03057 * 25 15 14 27 27 H 1.08999 * 109.47476 * 63.10972 * 1 2 3 28 28 H 1.09001 * 109.47161 * 183.11250 * 1 2 3 29 29 H 1.09001 * 109.46973 * 303.10875 * 1 2 3 30 30 H 1.09005 * 109.46621 * 240.00451 * 2 1 3 31 31 H 1.08993 * 109.47191 * 120.00378 * 2 1 3 32 32 H 0.96999 * 120.00533 * 180.02562 * 8 7 5 33 33 H 1.00902 * 110.99635 * 322.43541 * 13 3 2 34 34 H 1.09000 * 109.46935 * 294.80755 * 14 13 3 35 35 H 1.08996 * 109.46883 * 54.80788 * 14 13 3 36 36 H 1.08004 * 119.99685 * 359.97438 * 16 15 14 37 37 H 1.07996 * 120.00397 * 179.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4440 -0.0927 5 6 1.4358 2.1890 -1.1615 6 1 0.8267 3.0628 -0.9836 7 6 1.6608 1.7562 -2.4510 8 7 2.4021 0.6917 -2.6676 9 14 0.9113 2.6809 -3.8907 10 1 1.8525 3.7360 -4.3452 11 1 0.6520 1.7351 -5.0057 12 1 -0.3663 3.3071 -3.4656 13 7 1.6549 2.0980 1.2570 14 6 2.6496 1.8463 2.3082 15 6 2.2887 2.6352 3.5405 16 6 1.7408 1.9944 4.6355 17 6 1.4098 2.7190 5.7675 18 9 0.8737 2.0925 6.8378 19 6 1.6283 4.0859 5.8030 20 6 1.2674 4.8749 7.0353 21 9 1.5779 6.2239 6.8327 22 9 -0.1024 4.7448 7.2878 23 9 1.9915 4.3884 8.1291 24 6 2.1761 4.7266 4.7084 25 6 2.5116 4.0010 3.5778 26 9 3.0520 4.6266 2.5092 27 1 -0.3634 0.4648 -0.9165 28 1 -0.3633 -1.0262 0.0558 29 1 -0.3633 0.5613 0.8608 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.5606 0.3874 -3.5749 33 1 0.7356 1.8042 1.5511 34 1 2.6631 0.7832 2.5485 35 1 3.6350 2.1519 1.9567 36 1 1.5708 0.9281 4.6079 37 1 2.3461 5.7928 4.7359 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583271298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:12 Heat of formation + Delta-G solvation = -231.003693 kcal Electronic energy + Delta-G solvation = -27495.865007 eV Core-core repulsion = 22686.550240 eV Total energy + Delta-G solvation = -4809.314767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.35928 -50.24074 -49.94867 -48.78929 -48.76909 -40.42308 -38.29060 -35.17450 -33.56642 -31.94365 -31.33312 -28.94184 -27.48499 -25.35335 -24.83985 -24.38587 -22.64732 -21.20156 -19.95022 -19.75694 -19.65518 -18.64316 -18.24437 -18.03506 -17.21854 -17.13388 -16.73697 -16.49735 -16.20218 -15.76874 -15.61760 -15.53591 -15.32273 -15.18836 -15.16134 -14.91507 -14.87001 -14.78088 -14.36937 -14.23614 -13.89512 -13.68488 -13.61173 -13.25976 -12.99074 -12.82221 -12.70252 -12.41585 -12.28765 -11.86159 -11.64762 -11.39318 -10.98502 -10.55719 -10.40670 -9.81912 -8.98712 -8.03939 -6.11208 -0.61768 -0.26966 1.38059 1.43689 1.46240 1.54720 1.90319 2.40796 2.47444 2.62689 2.81998 3.12883 3.20836 3.25773 3.34601 3.49493 3.80425 3.85394 4.20733 4.32830 4.46638 4.50757 4.58411 4.63995 4.67228 4.79960 4.80497 4.97291 5.13422 5.35801 5.42753 5.44788 5.71949 5.78387 5.84810 6.33404 6.64869 6.81188 6.99971 7.56285 9.01113 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003088 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.763982 B = 9064.062014 C = 9614.033731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 C 0.223 3.777 4 H 0.003 0.997 5 C -0.497 4.497 6 H 0.050 0.950 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.682 5.682 14 C 0.093 3.907 15 C -0.050 4.050 16 C -0.110 4.110 17 C 0.137 3.863 18 F -0.123 7.123 19 C -0.202 4.202 20 C 0.521 3.479 21 F -0.168 7.168 22 F -0.174 7.174 23 F -0.173 7.173 24 C -0.076 4.076 25 C 0.104 3.896 26 F -0.128 7.128 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.258 0.742 33 H 0.336 0.664 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.178 0.822 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 4.340 19.601 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.115 3.885 4 H 0.021 0.979 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.773 3.227 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.314 5.314 14 C -0.036 4.036 15 C -0.051 4.051 16 C -0.129 4.129 17 C 0.117 3.883 18 F -0.101 7.101 19 C -0.205 4.205 20 C 0.466 3.534 21 F -0.149 7.149 22 F -0.156 7.156 23 F -0.154 7.154 24 C -0.094 4.094 25 C 0.084 3.916 26 F -0.107 7.107 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.156 0.844 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.196 0.804 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.940 4.867 19.302 19.929 hybrid contribution -0.352 -0.390 -0.745 0.911 sum -1.292 4.477 18.558 19.134 Atomic orbital electron populations 1.21457 0.96042 0.99349 1.00860 1.21964 0.96388 0.99698 0.99843 1.18964 0.93926 0.89522 0.86077 0.97942 1.21265 1.30287 1.11248 0.90836 0.93144 1.25512 0.96013 0.95847 1.00854 1.69987 1.40045 1.24975 1.20973 0.85737 0.78970 0.78425 0.79561 1.20829 1.21233 1.19506 1.60696 1.04464 1.63298 1.02926 1.20866 0.97149 0.97157 0.88396 1.20099 0.96384 0.92553 0.96104 1.21091 0.99360 1.02628 0.89868 1.17193 0.97053 0.88843 0.85222 1.91583 1.83099 1.82206 1.53246 1.19786 1.11065 0.93348 0.96262 1.17827 0.74805 0.77723 0.82999 1.93196 1.92731 1.34134 1.94872 1.93244 1.31793 1.95681 1.94844 1.93241 1.77681 1.87755 1.56737 1.20898 0.96394 1.02503 0.89632 1.17467 0.99139 0.90430 0.84564 1.91581 1.82935 1.82183 1.53961 0.94339 0.93744 0.93058 0.92020 0.94770 0.93259 0.84429 0.92332 0.90868 0.80446 0.80560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.61 9.39 71.98 0.68 -3.93 16 2 C -0.14 -5.98 5.51 30.60 0.17 -5.81 16 3 C 0.22 10.34 2.34 44.17 0.10 10.45 16 4 H 0.00 0.14 7.69 -2.39 -0.02 0.12 16 5 C -0.50 -26.06 7.41 25.60 0.19 -25.87 16 6 H 0.05 2.71 7.81 -2.92 -0.02 2.69 16 7 C 0.02 0.85 5.26 84.65 0.45 1.30 16 8 N -0.92 -50.95 11.38 21.45 0.24 -50.70 16 9 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 N -0.68 -25.68 6.20 -499.47 -3.09 -28.78 16 14 C 0.09 2.81 5.33 85.56 0.46 3.27 16 15 C -0.05 -1.23 5.44 -19.83 -0.11 -1.34 16 16 C -0.11 -2.20 9.64 22.31 0.22 -1.98 16 17 C 0.14 2.81 7.13 22.37 0.16 2.97 16 18 F -0.12 -2.59 16.46 44.97 0.74 -1.85 16 19 C -0.20 -4.13 5.38 -19.83 -0.11 -4.23 16 20 C 0.52 10.40 3.03 71.24 0.22 10.62 16 21 F -0.17 -3.17 15.97 44.97 0.72 -2.45 16 22 F -0.17 -3.74 17.05 44.97 0.77 -2.97 16 23 F -0.17 -3.57 17.05 44.97 0.77 -2.80 16 24 C -0.08 -1.56 9.41 22.31 0.21 -1.35 16 25 C 0.10 2.66 7.24 22.37 0.16 2.82 16 26 F -0.13 -3.99 16.75 44.97 0.75 -3.23 16 27 H 0.04 1.68 7.16 -2.39 -0.02 1.66 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.73 6.33 -2.39 -0.02 1.72 16 30 H 0.06 3.09 6.23 -2.38 -0.01 3.07 16 31 H 0.03 1.28 7.54 -2.39 -0.02 1.26 16 32 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 33 H 0.34 11.76 6.55 -89.69 -0.59 11.17 16 34 H 0.06 1.56 7.38 -2.39 -0.02 1.55 16 35 H 0.07 2.41 7.86 -2.39 -0.02 2.40 16 36 H 0.18 2.71 8.00 -2.91 -0.02 2.68 16 37 H 0.18 2.92 7.15 -2.91 -0.02 2.90 16 Total: -1.00 -56.87 330.37 6.26 -50.61 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.56 Total: 10.20 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 2.79 Total: -13.10 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.85 Total: -79.48 kcal Atomic # 9 Polarization: -17.05 SS G_CDS: 3.75 Total: -13.31 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -56.87 6.26 -50.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583271298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.393 kcal (2) G-P(sol) polarization free energy of solvation -56.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds