Wall clock time and date at job start Tue Mar 31 2020 14:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 H 1.09000 * 110.33053 * 52.74760 * 3 2 1 5 5 C 1.54480 * 110.37136 * 174.99540 * 3 2 1 6 6 C 1.54512 * 104.05924 * 142.91967 * 5 3 2 7 7 C 1.54476 * 104.06521 * 359.97438 * 6 5 3 8 8 H 1.09002 * 110.36786 * 94.96016 * 7 6 5 9 9 C 1.50694 * 110.37457 * 217.18764 * 7 6 5 10 10 O 1.21283 * 120.00343 * 113.45026 * 9 7 6 11 11 N 1.34783 * 120.00046 * 293.45476 * 9 7 6 12 12 C 1.37129 * 119.99934 * 4.98793 * 11 9 7 13 13 H 1.07997 * 120.00152 * 328.61098 * 12 11 9 14 14 C 1.38885 * 119.99756 * 148.61208 * 12 11 9 15 15 N 1.31425 * 120.00275 * 164.06259 * 14 12 11 16 16 Si 1.86801 * 120.00110 * 344.05944 * 14 12 11 17 17 H 1.48502 * 109.47087 * 85.16805 * 16 14 12 18 18 H 1.48500 * 109.47461 * 205.16980 * 16 14 12 19 19 H 1.48504 * 109.47165 * 325.17374 * 16 14 12 20 20 C 1.39810 * 119.99687 * 184.71851 * 11 9 7 21 21 C 1.38962 * 120.06128 * 124.11912 * 20 11 9 22 22 C 1.38074 * 119.92930 * 179.76156 * 21 20 11 23 23 C 1.38417 * 120.06705 * 0.48663 * 22 21 20 24 24 Cl 1.73601 * 119.93359 * 179.74183 * 23 22 21 25 25 C 1.38420 * 120.13041 * 359.77060 * 23 22 21 26 26 C 1.38068 * 120.06164 * 359.97438 * 25 23 22 27 27 O 1.44420 * 104.89994 * 336.07831 * 7 6 5 28 28 H 1.08996 * 109.47819 * 300.00349 * 1 2 3 29 29 H 1.09004 * 109.47175 * 60.00251 * 1 2 3 30 30 H 1.09007 * 109.46920 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47572 * 239.99985 * 2 1 3 32 32 H 1.09004 * 109.47175 * 119.99749 * 2 1 3 33 33 H 1.08998 * 110.51553 * 24.27942 * 5 3 2 34 34 H 1.08996 * 110.51453 * 261.56523 * 5 3 2 35 35 H 1.08999 * 110.50990 * 241.35239 * 6 5 3 36 36 H 1.09003 * 110.50895 * 118.64805 * 6 5 3 37 37 H 0.96992 * 120.00210 * 179.97438 * 15 14 12 38 38 H 1.08000 * 120.03601 * 0.02562 * 21 20 11 39 39 H 1.08001 * 119.96561 * 180.21057 * 22 21 20 40 40 H 1.07993 * 119.96827 * 179.97438 * 25 23 22 41 41 H 1.08001 * 120.02831 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5828 2.0058 0.8136 5 6 3.5793 1.4686 0.1263 6 6 4.0104 2.6438 -0.7795 7 6 2.6805 3.1882 -1.3465 8 1 2.3223 4.0205 -0.7407 9 6 2.8591 3.6217 -2.7786 10 8 2.2930 3.0230 -3.6686 11 7 3.6480 4.6748 -3.0706 12 6 4.3684 5.2879 -2.0778 13 1 3.9819 5.3175 -1.0698 14 6 5.5949 5.8708 -2.3687 15 7 6.1377 6.7169 -1.5221 16 14 6.4733 5.4522 -3.9632 17 1 5.9651 6.3247 -5.0522 18 1 7.9329 5.6687 -3.7960 19 1 6.2202 4.0305 -4.3094 20 6 3.7363 5.1384 -4.3866 21 6 3.4486 6.4665 -4.6775 22 6 3.5414 6.9227 -5.9774 23 6 3.9107 6.0563 -6.9917 24 17 4.0197 6.6319 -8.6259 25 6 4.1926 4.7316 -6.7058 26 6 4.1067 4.2710 -5.4070 27 8 1.7611 2.0772 -1.2684 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0080 0.5329 -0.2323 34 1 3.8747 1.6541 1.1590 35 1 4.6521 2.2889 -1.5859 36 1 4.5189 3.4102 -0.1946 37 1 6.9945 7.1237 -1.7250 38 1 3.1569 7.1421 -3.8871 39 1 3.3212 7.9555 -6.2036 40 1 4.4801 4.0578 -7.4992 41 1 4.3264 3.2372 -5.1846 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592653409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:06 Heat of formation + Delta-G solvation = -52.969921 kcal Electronic energy + Delta-G solvation = -25766.396045 eV Core-core repulsion = 22058.454823 eV Total energy + Delta-G solvation = -3707.941223 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30632 -39.12840 -37.60632 -36.13447 -34.97143 -33.44044 -32.23169 -31.71323 -30.63597 -29.60511 -27.84698 -25.29404 -24.14081 -22.39627 -22.06202 -21.31013 -20.74659 -19.24442 -18.24486 -16.74576 -16.45996 -16.09889 -15.62012 -15.44172 -14.96971 -14.70848 -13.94542 -13.68738 -13.47107 -13.42145 -13.32273 -13.26110 -13.05930 -12.91796 -12.70671 -12.32814 -11.71963 -11.67836 -11.52737 -11.34188 -11.32618 -11.16103 -11.06040 -10.80901 -10.57578 -10.50093 -10.42281 -10.28917 -10.02408 -9.52011 -9.45223 -8.84217 -8.62832 -8.47368 -7.66635 -6.66746 -4.31510 1.53251 1.78624 2.47416 3.07252 3.19885 3.24840 3.38255 3.63537 4.02443 4.15275 4.49637 4.80373 4.80670 4.99355 5.19785 5.25466 5.26748 5.28939 5.40720 5.43391 5.55412 5.65088 5.80883 5.86617 5.88091 5.91550 5.96401 5.99102 6.07223 6.10427 6.27507 6.36322 6.38470 6.44414 6.47593 6.56811 6.67596 6.91695 7.00968 7.17360 7.35536 7.76773 8.02500 8.65054 9.02987 9.31733 10.40387 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.004307 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.967648 B = 6500.129307 C = 7648.864903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.070 3.930 4 H 0.066 0.934 5 C -0.152 4.152 6 C -0.127 4.127 7 C 0.081 3.919 8 H 0.089 0.911 9 C 0.494 3.506 10 O -0.554 6.554 11 N -0.420 5.420 12 C -0.355 4.355 13 H 0.116 0.884 14 C 0.079 3.921 15 N -0.853 5.853 16 Si 0.856 3.144 17 H -0.252 1.252 18 H -0.290 1.290 19 H -0.257 1.257 20 C 0.161 3.839 21 C -0.105 4.105 22 C -0.101 4.101 23 C -0.055 4.055 24 Cl -0.091 7.091 25 C -0.105 4.105 26 C -0.111 4.111 27 O -0.348 6.348 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.279 0.721 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.314 -5.101 0.145 6.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C 0.012 3.988 4 H 0.084 0.916 5 C -0.190 4.190 6 C -0.165 4.165 7 C 0.020 3.980 8 H 0.106 0.894 9 C 0.284 3.716 10 O -0.434 6.434 11 N -0.136 5.136 12 C -0.480 4.480 13 H 0.134 0.866 14 C -0.130 4.130 15 N -0.487 5.487 16 Si 0.681 3.319 17 H -0.177 1.177 18 H -0.217 1.217 19 H -0.181 1.181 20 C 0.067 3.933 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.082 4.082 24 Cl -0.063 7.063 25 C -0.125 4.125 26 C -0.132 4.132 27 O -0.266 6.266 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.158 0.842 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.612 -5.311 -0.467 6.440 hybrid contribution 0.940 0.184 -0.594 1.127 sum -2.672 -5.127 -1.062 5.878 Atomic orbital electron populations 1.21735 0.95501 1.01202 1.02349 1.21558 0.96555 0.94744 1.02416 1.23066 0.94406 0.94085 0.87236 0.91578 1.23044 0.95678 0.99709 1.00592 1.22740 0.96685 0.97526 0.99529 1.22487 0.90275 0.90614 0.94606 0.89389 1.20208 0.81785 0.79471 0.90165 1.90623 1.50412 1.53847 1.48488 1.41461 1.40589 1.26732 1.04858 1.19184 1.00572 1.37330 0.90895 0.86617 1.25191 0.95965 0.94249 0.97585 1.69680 1.18417 1.23984 1.36576 0.87241 0.79135 0.81492 0.84009 1.17661 1.21700 1.18105 1.17796 0.96902 0.92947 0.85639 1.21093 0.99727 0.95762 0.95954 1.20768 1.00577 0.99217 0.91449 1.20714 1.08077 0.94595 0.84859 1.98312 1.97105 1.89301 1.21541 1.20737 1.01329 0.93754 0.96658 1.21109 0.99696 1.00520 0.91835 1.89236 1.57170 1.43418 1.36782 0.93017 0.91816 0.93060 0.91088 0.91013 0.90923 0.90647 0.90718 0.88558 0.91041 0.84248 0.85228 0.85358 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.85 37.15 0.37 -1.36 16 2 C -0.12 -1.38 5.56 -26.73 -0.15 -1.53 16 3 C 0.07 1.00 3.24 -25.95 -0.08 0.91 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.15 -2.07 6.63 -25.16 -0.17 -2.24 16 6 C -0.13 -2.17 5.48 -25.16 -0.14 -2.31 16 7 C 0.08 1.56 2.81 -27.11 -0.08 1.48 16 8 H 0.09 1.62 7.61 -51.93 -0.40 1.23 16 9 C 0.49 11.20 6.81 -10.99 -0.07 11.13 16 10 O -0.55 -13.92 15.47 -13.65 -0.21 -14.13 16 11 N -0.42 -9.59 2.50 -58.98 -0.15 -9.74 16 12 C -0.35 -8.36 7.91 -14.94 -0.12 -8.48 16 13 H 0.12 2.76 6.36 -52.49 -0.33 2.43 16 14 C 0.08 1.95 5.23 -17.49 -0.09 1.86 16 15 N -0.85 -21.87 13.96 55.49 0.77 -21.10 16 16 Si 0.86 19.64 23.47 -169.99 -3.99 15.65 16 17 H -0.25 -5.71 5.56 56.52 0.31 -5.39 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.26 -5.91 6.02 56.52 0.34 -5.57 16 20 C 0.16 3.56 2.52 -83.68 -0.21 3.35 16 21 C -0.11 -2.14 7.92 -39.37 -0.31 -2.45 16 22 C -0.10 -1.82 9.19 -39.58 -0.36 -2.19 16 23 C -0.06 -0.99 6.14 -39.45 -0.24 -1.23 16 24 Cl -0.09 -1.39 28.95 -51.86 -1.50 -2.89 16 25 C -0.11 -1.95 9.73 -39.58 -0.38 -2.34 16 26 C -0.11 -2.34 5.71 -39.38 -0.22 -2.57 16 27 O -0.35 -6.56 10.41 -54.44 -0.57 -7.12 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.85 8.01 -51.93 -0.42 0.44 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.38 7.86 -51.93 -0.41 0.98 16 36 H 0.10 1.66 7.28 -51.93 -0.38 1.28 16 37 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.14 2.77 8.05 -52.49 -0.42 2.35 16 39 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 40 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.13 2.80 7.64 -52.49 -0.40 2.40 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -27.77 342.12 -8.59 -36.35 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.83 Total: 5.79 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.27 Total: -7.97 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.63 Total: -30.84 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.78 Total: -21.25 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -3.99 Total: 15.65 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.50 Total: -2.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.77 -8.59 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592653409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.618 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds