Wall clock time and date at job start Tue Mar 31 2020 14:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 H 1.09000 * 110.33053 * 52.74760 * 3 2 1 5 5 C 1.54480 * 110.37136 * 174.99540 * 3 2 1 6 6 C 1.54512 * 104.05924 * 142.91967 * 5 3 2 7 7 C 1.54476 * 104.06521 * 359.97438 * 6 5 3 8 8 H 1.09002 * 110.36786 * 94.96016 * 7 6 5 9 9 C 1.50694 * 110.37457 * 217.18764 * 7 6 5 10 10 O 1.21283 * 120.00343 * 113.45026 * 9 7 6 11 11 N 1.34783 * 120.00046 * 293.45476 * 9 7 6 12 12 C 1.37129 * 119.99934 * 4.98793 * 11 9 7 13 13 H 1.07997 * 120.00152 * 328.61098 * 12 11 9 14 14 C 1.38885 * 119.99756 * 148.61208 * 12 11 9 15 15 N 1.31425 * 120.00275 * 164.06259 * 14 12 11 16 16 Si 1.86801 * 120.00110 * 344.05944 * 14 12 11 17 17 H 1.48502 * 109.47087 * 85.16805 * 16 14 12 18 18 H 1.48500 * 109.47461 * 205.16980 * 16 14 12 19 19 H 1.48504 * 109.47165 * 325.17374 * 16 14 12 20 20 C 1.39810 * 119.99687 * 184.71851 * 11 9 7 21 21 C 1.38962 * 120.06128 * 124.11912 * 20 11 9 22 22 C 1.38074 * 119.92930 * 179.76156 * 21 20 11 23 23 C 1.38417 * 120.06705 * 0.48663 * 22 21 20 24 24 Cl 1.73601 * 119.93359 * 179.74183 * 23 22 21 25 25 C 1.38420 * 120.13041 * 359.77060 * 23 22 21 26 26 C 1.38068 * 120.06164 * 359.97438 * 25 23 22 27 27 O 1.44420 * 104.89994 * 336.07831 * 7 6 5 28 28 H 1.08996 * 109.47819 * 300.00349 * 1 2 3 29 29 H 1.09004 * 109.47175 * 60.00251 * 1 2 3 30 30 H 1.09007 * 109.46920 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47572 * 239.99985 * 2 1 3 32 32 H 1.09004 * 109.47175 * 119.99749 * 2 1 3 33 33 H 1.08998 * 110.51553 * 24.27942 * 5 3 2 34 34 H 1.08996 * 110.51453 * 261.56523 * 5 3 2 35 35 H 1.08999 * 110.50990 * 241.35239 * 6 5 3 36 36 H 1.09003 * 110.50895 * 118.64805 * 6 5 3 37 37 H 0.96992 * 120.00210 * 179.97438 * 15 14 12 38 38 H 1.08000 * 120.03601 * 0.02562 * 21 20 11 39 39 H 1.08001 * 119.96561 * 180.21057 * 22 21 20 40 40 H 1.07993 * 119.96827 * 179.97438 * 25 23 22 41 41 H 1.08001 * 120.02831 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5828 2.0058 0.8136 5 6 3.5793 1.4686 0.1263 6 6 4.0104 2.6438 -0.7795 7 6 2.6805 3.1882 -1.3465 8 1 2.3223 4.0205 -0.7407 9 6 2.8591 3.6217 -2.7786 10 8 2.2930 3.0230 -3.6686 11 7 3.6480 4.6748 -3.0706 12 6 4.3684 5.2879 -2.0778 13 1 3.9819 5.3175 -1.0698 14 6 5.5949 5.8708 -2.3687 15 7 6.1377 6.7169 -1.5221 16 14 6.4733 5.4522 -3.9632 17 1 5.9651 6.3247 -5.0522 18 1 7.9329 5.6687 -3.7960 19 1 6.2202 4.0305 -4.3094 20 6 3.7363 5.1384 -4.3866 21 6 3.4486 6.4665 -4.6775 22 6 3.5414 6.9227 -5.9774 23 6 3.9107 6.0563 -6.9917 24 17 4.0197 6.6319 -8.6259 25 6 4.1926 4.7316 -6.7058 26 6 4.1067 4.2710 -5.4070 27 8 1.7611 2.0772 -1.2684 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0080 0.5329 -0.2323 34 1 3.8747 1.6541 1.1590 35 1 4.6521 2.2889 -1.5859 36 1 4.5189 3.4102 -0.1946 37 1 6.9945 7.1237 -1.7250 38 1 3.1569 7.1421 -3.8871 39 1 3.3212 7.9555 -6.2036 40 1 4.4801 4.0578 -7.4992 41 1 4.3264 3.2372 -5.1846 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592653409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:06 Heat of formation + Delta-G solvation = -67.016178 kcal Electronic energy + Delta-G solvation = -25767.005137 eV Core-core repulsion = 22058.454823 eV Total energy + Delta-G solvation = -3708.550314 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93959 -40.52887 -39.15697 -37.57868 -36.69301 -34.52317 -34.09629 -33.05632 -32.17150 -31.08207 -29.19920 -27.10755 -25.45279 -23.94343 -23.49300 -22.61463 -21.88314 -20.96287 -19.93436 -18.36298 -17.99896 -17.46051 -17.28086 -16.91481 -16.45177 -16.30824 -15.46203 -15.21566 -15.02758 -14.91590 -14.67718 -14.55526 -14.48587 -14.31161 -14.10035 -13.84398 -13.30505 -13.18443 -13.02182 -12.78169 -12.66286 -12.61061 -12.36560 -12.21392 -11.93440 -11.83434 -11.74493 -11.65718 -11.46432 -11.22136 -10.88747 -10.51089 -10.40642 -10.03104 -9.32115 -8.57089 -6.21260 -0.02597 0.24240 1.05888 1.23016 1.34803 1.38483 1.63608 2.08492 2.17722 2.53559 2.97040 3.13661 3.62548 3.69537 3.78733 3.84745 3.96357 4.05225 4.22580 4.23335 4.27703 4.36262 4.40139 4.41905 4.50448 4.64729 4.82035 4.87057 4.90092 4.98191 4.98973 5.09233 5.13738 5.14572 5.19830 5.25295 5.28935 5.40892 5.45494 5.67883 5.84133 5.97674 6.21519 6.80414 7.19982 7.53774 8.52565 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.004307 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.967648 B = 6500.129307 C = 7648.864903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.061 3.939 4 H 0.082 0.918 5 C -0.142 4.142 6 C -0.123 4.123 7 C 0.082 3.918 8 H 0.094 0.906 9 C 0.485 3.515 10 O -0.587 6.587 11 N -0.426 5.426 12 C -0.342 4.342 13 H 0.109 0.891 14 C 0.055 3.945 15 N -0.883 5.883 16 Si 0.892 3.108 17 H -0.246 1.246 18 H -0.297 1.297 19 H -0.265 1.265 20 C 0.130 3.870 21 C -0.116 4.116 22 C -0.096 4.096 23 C -0.053 4.053 24 Cl -0.059 7.059 25 C -0.104 4.104 26 C -0.126 4.126 27 O -0.374 6.374 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.281 0.719 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -5.326 -0.187 6.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.004 3.996 4 H 0.100 0.900 5 C -0.179 4.179 6 C -0.161 4.161 7 C 0.022 3.978 8 H 0.111 0.889 9 C 0.276 3.724 10 O -0.469 6.469 11 N -0.142 5.142 12 C -0.467 4.467 13 H 0.127 0.873 14 C -0.151 4.151 15 N -0.519 5.519 16 Si 0.718 3.282 17 H -0.170 1.170 18 H -0.224 1.224 19 H -0.190 1.190 20 C 0.038 3.962 21 C -0.136 4.136 22 C -0.115 4.115 23 C -0.080 4.080 24 Cl -0.030 7.030 25 C -0.123 4.123 26 C -0.146 4.146 27 O -0.293 6.293 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.173 0.827 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.743 -5.528 -0.813 6.725 hybrid contribution 0.899 0.254 -0.625 1.124 sum -2.845 -5.274 -1.438 6.162 Atomic orbital electron populations 1.21723 0.95208 1.02158 1.01558 1.21608 0.96829 0.93256 1.03306 1.23423 0.95020 0.95338 0.85795 0.90015 1.23041 0.95152 0.98384 1.01348 1.22673 0.95217 0.98856 0.99386 1.22455 0.91663 0.91286 0.92418 0.88876 1.20842 0.81033 0.79076 0.91457 1.90579 1.51677 1.54874 1.49788 1.41523 1.40552 1.26874 1.05268 1.19101 1.00491 1.36175 0.90958 0.87334 1.25472 0.96396 0.94374 0.98889 1.69717 1.18988 1.25362 1.37806 0.86672 0.77912 0.80888 0.82758 1.16970 1.22425 1.18981 1.18105 0.98569 0.94020 0.85550 1.21207 1.00173 0.95056 0.97156 1.21115 0.99133 1.00759 0.90454 1.20874 1.06353 0.94309 0.86481 1.98328 1.96863 1.88886 1.18955 1.21033 1.00327 0.94703 0.96250 1.21119 1.00719 0.99867 0.92938 1.89222 1.57300 1.43437 1.39382 0.91761 0.94620 0.91272 0.92436 0.87767 0.90004 0.87731 0.92892 0.88904 0.90921 0.84427 0.82122 0.82681 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.85 71.98 0.71 -2.48 16 2 C -0.11 -2.49 5.56 30.59 0.17 -2.32 16 3 C 0.06 1.66 3.24 31.10 0.10 1.76 16 4 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 5 C -0.14 -3.62 6.63 31.61 0.21 -3.41 16 6 C -0.12 -4.24 5.48 31.61 0.17 -4.07 16 7 C 0.08 3.24 2.81 30.35 0.09 3.32 16 8 H 0.09 3.51 7.61 -2.39 -0.02 3.49 16 9 C 0.48 22.73 6.81 87.65 0.60 23.33 16 10 O -0.59 -30.58 15.47 15.33 0.24 -30.35 16 11 N -0.43 -19.93 2.50 -458.89 -1.15 -21.07 16 12 C -0.34 -16.44 7.91 84.02 0.66 -15.77 16 13 H 0.11 5.30 6.36 -2.91 -0.02 5.29 16 14 C 0.06 2.73 5.23 84.91 0.44 3.18 16 15 N -0.88 -45.71 13.96 21.65 0.30 -45.41 16 16 Si 0.89 40.69 23.47 68.60 1.61 42.30 16 17 H -0.25 -10.79 5.56 99.48 0.55 -10.23 16 18 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.26 -12.31 6.02 99.48 0.60 -11.71 16 20 C 0.13 5.81 2.52 38.21 0.10 5.91 16 21 C -0.12 -4.65 7.92 22.40 0.18 -4.47 16 22 C -0.10 -3.25 9.19 22.27 0.20 -3.05 16 23 C -0.05 -1.76 6.14 22.36 0.14 -1.63 16 24 Cl -0.06 -1.61 28.95 -2.72 -0.08 -1.69 16 25 C -0.10 -3.69 9.73 22.27 0.22 -3.48 16 26 C -0.13 -5.32 5.71 22.40 0.13 -5.20 16 27 O -0.37 -14.26 10.41 -130.61 -1.36 -15.62 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.03 0.95 8.01 -2.39 -0.02 0.93 16 30 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.95 7.87 -2.39 -0.02 1.93 16 34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 2.02 7.86 -2.39 -0.02 2.00 16 36 H 0.09 3.22 7.28 -2.39 -0.02 3.20 16 37 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.14 5.48 8.05 -2.91 -0.02 5.45 16 39 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.16 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.12 5.14 7.64 -2.91 -0.02 5.12 16 Total: -1.00 -60.78 342.12 4.45 -56.33 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.77 Total: 23.88 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.11 Total: -8.38 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -0.84 Total: -66.48 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -1.12 Total: -45.97 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 1.61 Total: 42.30 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -60.78 4.45 -56.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592653409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.685 kcal (2) G-P(sol) polarization free energy of solvation -60.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds