Wall clock time and date at job start Tue Mar 31 2020 14:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47072 * 2 1 4 4 H 1.09000 * 110.27251 * 52.91057 * 3 2 1 5 5 C 1.54947 * 110.30535 * 175.00602 * 3 2 1 6 6 C 1.55309 * 100.93890 * 155.36175 * 5 3 2 7 7 C 1.54381 * 102.25287 * 325.86365 * 6 5 3 8 8 H 1.09003 * 109.82894 * 261.75623 * 7 6 5 9 9 C 1.50693 * 109.82906 * 140.87284 * 7 6 5 10 10 O 1.21290 * 119.99949 * 245.18310 * 9 7 6 11 11 N 1.34773 * 120.00590 * 65.18744 * 9 7 6 12 12 C 1.37141 * 119.99357 * 355.90746 * 11 9 7 13 13 H 1.07999 * 120.00289 * 347.78616 * 12 11 9 14 14 C 1.38883 * 119.99621 * 167.78845 * 12 11 9 15 15 N 1.31427 * 120.00391 * 344.68508 * 14 12 11 16 16 Si 1.86806 * 120.00006 * 164.68220 * 14 12 11 17 17 H 1.48506 * 109.47077 * 89.99826 * 16 14 12 18 18 H 1.48498 * 109.47243 * 210.00189 * 16 14 12 19 19 H 1.48497 * 109.46931 * 330.00063 * 16 14 12 20 20 C 1.39805 * 120.00526 * 175.91251 * 11 9 7 21 21 C 1.38961 * 120.06618 * 103.91416 * 20 11 9 22 22 C 1.38077 * 119.93360 * 179.72053 * 21 20 11 23 23 C 1.38415 * 120.06268 * 0.55455 * 22 21 20 24 24 Cl 1.73604 * 119.93350 * 179.69940 * 23 22 21 25 25 C 1.38416 * 120.13104 * 359.71602 * 23 22 21 26 26 C 1.38071 * 120.06658 * 0.02562 * 25 23 22 27 27 O 1.43233 * 107.66512 * 21.31044 * 7 6 5 28 28 H 1.08997 * 109.46947 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46853 * 299.99658 * 1 2 3 30 30 H 1.08994 * 109.47498 * 59.99784 * 1 2 3 31 31 H 1.09004 * 109.46853 * 240.00342 * 2 1 3 32 32 H 1.08994 * 109.47498 * 120.00216 * 2 1 3 33 33 H 1.08999 * 111.13034 * 37.44136 * 5 3 2 34 34 H 1.09006 * 111.15653 * 273.29370 * 5 3 2 35 35 H 1.08995 * 110.84603 * 207.67213 * 6 5 3 36 36 H 1.09001 * 110.84801 * 84.05213 * 6 5 3 37 37 H 0.97002 * 120.00452 * 185.02056 * 15 14 12 38 38 H 1.08000 * 120.03405 * 359.96937 * 21 20 11 39 39 H 1.07998 * 119.96626 * 180.26632 * 22 21 20 40 40 H 1.08008 * 119.96625 * 179.97438 * 25 23 22 41 41 H 1.08005 * 120.03219 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0041 0.8156 5 6 3.5841 1.4669 0.1265 6 6 3.9115 2.8384 -0.5246 7 6 2.8319 2.9458 -1.6229 8 1 3.2495 2.6419 -2.5828 9 6 2.3303 4.3641 -1.7097 10 8 1.1790 4.6186 -1.4253 11 7 3.1608 5.3498 -2.1034 12 6 4.4830 5.0770 -2.3442 13 1 4.9047 4.1323 -2.0342 14 6 5.2799 6.0156 -2.9867 15 7 4.7253 7.0204 -3.6272 16 14 7.1400 5.8501 -2.9405 17 1 7.5937 5.0385 -4.0985 18 1 7.7588 7.1984 -3.0081 19 1 7.5463 5.1818 -1.6782 20 6 2.6744 6.6504 -2.2663 21 6 2.9476 7.6207 -1.3099 22 6 2.4708 8.9058 -1.4764 23 6 1.7117 9.2250 -2.5889 24 17 1.1074 10.8399 -2.7910 25 6 1.4333 8.2592 -3.5405 26 6 1.9118 6.9738 -3.3821 27 8 1.7565 2.0711 -1.2622 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 4.0372 0.6484 -0.4328 34 1 3.8937 1.4442 1.1714 35 1 4.9101 2.8319 -0.9615 36 1 3.8093 3.6462 0.2001 37 1 5.2769 7.6346 -4.1366 38 1 3.5357 7.3710 -0.4391 39 1 2.6864 9.6614 -0.7355 40 1 0.8403 8.5111 -4.4074 41 1 1.6946 6.2207 -4.1251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592653411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:12 Heat of formation + Delta-G solvation = -55.181236 kcal Electronic energy + Delta-G solvation = -25673.273812 eV Core-core repulsion = 21965.236700 eV Total energy + Delta-G solvation = -3708.037113 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00704 -38.80303 -37.20772 -35.79804 -34.71964 -33.39572 -31.95884 -31.59455 -30.17902 -29.35172 -27.69171 -25.17287 -23.97109 -21.95235 -21.79630 -21.43174 -20.62097 -19.22967 -17.98591 -17.01261 -16.17282 -15.76950 -15.49420 -14.95753 -14.82915 -14.48621 -13.85864 -13.73717 -13.47726 -13.30621 -13.11803 -12.70237 -12.66764 -12.61745 -12.52385 -11.89837 -11.59566 -11.52000 -11.43768 -11.28632 -11.16889 -10.95228 -10.86036 -10.72095 -10.59450 -10.52360 -10.50445 -10.18373 -10.10627 -9.58780 -9.49716 -8.36677 -8.25267 -8.08869 -7.58358 -6.35014 -4.11885 2.13980 2.28346 2.81639 2.99863 3.10934 3.13446 3.58148 3.85717 4.07033 4.55289 4.62200 4.79927 4.85559 4.97204 5.25327 5.29973 5.41313 5.44031 5.60414 5.65536 5.65831 5.74579 5.92006 5.97118 5.99956 6.03334 6.07006 6.21052 6.24605 6.30816 6.33296 6.44971 6.47066 6.50718 6.80760 6.92393 7.06637 7.23235 7.40459 7.44152 7.54585 7.73958 8.29747 8.89604 9.23836 9.67464 10.50602 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.004511 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.853248 B = 6205.498215 C = 7974.442097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.077 3.923 4 H 0.067 0.933 5 C -0.154 4.154 6 C -0.135 4.135 7 C 0.086 3.914 8 H 0.100 0.900 9 C 0.456 3.544 10 O -0.577 6.577 11 N -0.416 5.416 12 C -0.360 4.360 13 H 0.111 0.889 14 C 0.044 3.956 15 N -0.849 5.849 16 Si 0.919 3.081 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.268 1.268 20 C 0.259 3.741 21 C -0.110 4.110 22 C -0.106 4.106 23 C -0.055 4.055 24 Cl -0.106 7.106 25 C -0.104 4.104 26 C -0.071 4.071 27 O -0.352 6.352 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.274 0.726 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.136 -5.459 4.487 7.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.019 3.981 4 H 0.085 0.915 5 C -0.192 4.192 6 C -0.173 4.173 7 C 0.025 3.975 8 H 0.118 0.882 9 C 0.245 3.755 10 O -0.460 6.460 11 N -0.134 5.134 12 C -0.486 4.486 13 H 0.129 0.871 14 C -0.164 4.164 15 N -0.485 5.485 16 Si 0.745 3.255 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.193 1.193 20 C 0.168 3.832 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.081 4.081 24 Cl -0.077 7.077 25 C -0.124 4.124 26 C -0.090 4.090 27 O -0.270 6.270 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.870 -5.029 4.415 6.748 hybrid contribution 1.435 0.360 -0.196 1.492 sum 0.564 -4.669 4.218 6.317 Atomic orbital electron populations 1.21720 0.95429 1.00933 1.02642 1.21635 0.96766 0.95073 1.02122 1.23040 0.93967 0.93422 0.87624 0.91488 1.23355 0.95996 0.98147 1.01697 1.23090 0.99659 0.96969 0.97614 1.22303 0.86750 0.88931 0.99535 0.88238 1.20467 0.85664 0.86695 0.82690 1.90599 1.18288 1.83414 1.53653 1.41356 1.09174 1.03857 1.59043 1.19879 0.82905 1.04942 1.40842 0.87115 1.25263 1.00447 0.95506 0.95155 1.69833 1.35969 1.15209 1.27445 0.86044 0.82482 0.78054 0.78924 1.20202 1.20581 1.19280 1.17103 0.90048 0.84672 0.91394 1.20887 1.00616 0.92272 0.99183 1.20536 0.98847 0.96423 0.96708 1.20542 1.03987 0.84729 0.98849 1.98287 1.87480 1.24467 1.97507 1.20554 1.01376 0.92296 0.98175 1.20788 0.97023 0.95033 0.96201 1.88511 1.42971 1.58699 1.36800 0.93223 0.92953 0.91743 0.91346 0.91206 0.90425 0.90266 0.88829 0.90238 0.91411 0.86587 0.86494 0.86427 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.85 37.16 0.37 -1.44 16 2 C -0.12 -1.41 5.66 -26.73 -0.15 -1.57 16 3 C 0.08 1.15 3.41 -25.70 -0.09 1.06 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C -0.15 -1.98 6.57 -24.48 -0.16 -2.14 16 6 C -0.14 -2.16 5.19 -24.78 -0.13 -2.29 16 7 C 0.09 1.65 3.10 -27.16 -0.08 1.57 16 8 H 0.10 1.87 8.02 -51.93 -0.42 1.46 16 9 C 0.46 10.71 6.87 -10.99 -0.08 10.63 16 10 O -0.58 -15.37 16.48 -14.10 -0.23 -15.60 16 11 N -0.42 -9.86 2.66 -58.98 -0.16 -10.01 16 12 C -0.36 -8.24 8.83 -14.94 -0.13 -8.38 16 13 H 0.11 2.30 4.31 -52.49 -0.23 2.07 16 14 C 0.04 1.02 5.22 -17.49 -0.09 0.93 16 15 N -0.85 -20.75 10.23 55.49 0.57 -20.18 16 16 Si 0.92 18.14 29.58 -169.99 -5.03 13.11 16 17 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 20 C 0.26 6.16 2.25 -83.69 -0.19 5.97 16 21 C -0.11 -2.43 9.54 -39.37 -0.38 -2.80 16 22 C -0.11 -2.12 9.82 -39.58 -0.39 -2.50 16 23 C -0.05 -1.08 6.32 -39.45 -0.25 -1.33 16 24 Cl -0.11 -1.79 28.95 -51.86 -1.50 -3.29 16 25 C -0.10 -2.14 9.82 -39.58 -0.39 -2.53 16 26 C -0.07 -1.62 8.98 -39.38 -0.35 -1.98 16 27 O -0.35 -6.73 10.03 -54.88 -0.55 -7.28 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.91 7.99 -51.93 -0.42 0.49 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.40 6.51 -51.93 -0.34 1.06 16 36 H 0.08 1.36 7.84 -51.93 -0.41 0.95 16 37 H 0.27 6.54 8.32 -40.82 -0.34 6.20 16 38 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 39 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 41 H 0.11 2.64 8.06 -52.48 -0.42 2.21 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -27.92 352.82 -9.66 -37.58 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.58 Total: 7.15 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.49 Total: -6.79 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.41 Total: -30.20 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.78 Total: -22.89 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -1.50 Total: -3.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.92 -9.66 -37.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592653411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.600 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds