Wall clock time and date at job start Tue Mar 31 2020 14:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47072 * 2 1 4 4 H 1.09000 * 110.27251 * 52.91057 * 3 2 1 5 5 C 1.54947 * 110.30535 * 175.00602 * 3 2 1 6 6 C 1.55309 * 100.93890 * 155.36175 * 5 3 2 7 7 C 1.54381 * 102.25287 * 325.86365 * 6 5 3 8 8 H 1.09003 * 109.82894 * 261.75623 * 7 6 5 9 9 C 1.50693 * 109.82906 * 140.87284 * 7 6 5 10 10 O 1.21290 * 119.99949 * 245.18310 * 9 7 6 11 11 N 1.34773 * 120.00590 * 65.18744 * 9 7 6 12 12 C 1.37141 * 119.99357 * 355.90746 * 11 9 7 13 13 H 1.07999 * 120.00289 * 347.78616 * 12 11 9 14 14 C 1.38883 * 119.99621 * 167.78845 * 12 11 9 15 15 N 1.31427 * 120.00391 * 344.68508 * 14 12 11 16 16 Si 1.86806 * 120.00006 * 164.68220 * 14 12 11 17 17 H 1.48506 * 109.47077 * 89.99826 * 16 14 12 18 18 H 1.48498 * 109.47243 * 210.00189 * 16 14 12 19 19 H 1.48497 * 109.46931 * 330.00063 * 16 14 12 20 20 C 1.39805 * 120.00526 * 175.91251 * 11 9 7 21 21 C 1.38961 * 120.06618 * 103.91416 * 20 11 9 22 22 C 1.38077 * 119.93360 * 179.72053 * 21 20 11 23 23 C 1.38415 * 120.06268 * 0.55455 * 22 21 20 24 24 Cl 1.73604 * 119.93350 * 179.69940 * 23 22 21 25 25 C 1.38416 * 120.13104 * 359.71602 * 23 22 21 26 26 C 1.38071 * 120.06658 * 0.02562 * 25 23 22 27 27 O 1.43233 * 107.66512 * 21.31044 * 7 6 5 28 28 H 1.08997 * 109.46947 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46853 * 299.99658 * 1 2 3 30 30 H 1.08994 * 109.47498 * 59.99784 * 1 2 3 31 31 H 1.09004 * 109.46853 * 240.00342 * 2 1 3 32 32 H 1.08994 * 109.47498 * 120.00216 * 2 1 3 33 33 H 1.08999 * 111.13034 * 37.44136 * 5 3 2 34 34 H 1.09006 * 111.15653 * 273.29370 * 5 3 2 35 35 H 1.08995 * 110.84603 * 207.67213 * 6 5 3 36 36 H 1.09001 * 110.84801 * 84.05213 * 6 5 3 37 37 H 0.97002 * 120.00452 * 185.02056 * 15 14 12 38 38 H 1.08000 * 120.03405 * 359.96937 * 21 20 11 39 39 H 1.07998 * 119.96626 * 180.26632 * 22 21 20 40 40 H 1.08008 * 119.96625 * 179.97438 * 25 23 22 41 41 H 1.08005 * 120.03219 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0041 0.8156 5 6 3.5841 1.4669 0.1265 6 6 3.9115 2.8384 -0.5246 7 6 2.8319 2.9458 -1.6229 8 1 3.2495 2.6419 -2.5828 9 6 2.3303 4.3641 -1.7097 10 8 1.1790 4.6186 -1.4253 11 7 3.1608 5.3498 -2.1034 12 6 4.4830 5.0770 -2.3442 13 1 4.9047 4.1323 -2.0342 14 6 5.2799 6.0156 -2.9867 15 7 4.7253 7.0204 -3.6272 16 14 7.1400 5.8501 -2.9405 17 1 7.5937 5.0385 -4.0985 18 1 7.7588 7.1984 -3.0081 19 1 7.5463 5.1818 -1.6782 20 6 2.6744 6.6504 -2.2663 21 6 2.9476 7.6207 -1.3099 22 6 2.4708 8.9058 -1.4764 23 6 1.7117 9.2250 -2.5889 24 17 1.1074 10.8399 -2.7910 25 6 1.4333 8.2592 -3.5405 26 6 1.9118 6.9738 -3.3821 27 8 1.7565 2.0711 -1.2622 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 4.0372 0.6484 -0.4328 34 1 3.8937 1.4442 1.1714 35 1 4.9101 2.8319 -0.9615 36 1 3.8093 3.6462 0.2001 37 1 5.2769 7.6346 -4.1366 38 1 3.5357 7.3710 -0.4391 39 1 2.6864 9.6614 -0.7355 40 1 0.8403 8.5111 -4.4074 41 1 1.6946 6.2207 -4.1251 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592653411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:12 Heat of formation + Delta-G solvation = -67.819921 kcal Electronic energy + Delta-G solvation = -25673.821867 eV Core-core repulsion = 21965.236700 eV Total energy + Delta-G solvation = -3708.585167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61035 -40.29361 -38.83954 -37.36721 -36.46724 -34.50279 -33.61839 -33.03687 -31.85131 -30.86450 -29.09514 -26.94586 -25.28304 -23.61500 -23.29049 -22.70156 -21.84761 -20.93222 -19.65779 -18.51805 -17.75660 -17.14727 -16.98237 -16.70052 -16.48313 -16.08933 -15.46814 -14.93913 -14.91626 -14.83155 -14.32710 -14.26413 -14.17505 -14.03728 -13.81767 -13.53149 -13.12877 -12.89713 -12.84293 -12.72566 -12.55683 -12.38939 -12.27309 -12.13090 -12.08534 -11.82955 -11.72777 -11.67685 -11.35262 -11.27249 -10.98408 -10.08238 -10.01846 -9.77149 -9.28331 -8.10369 -5.93513 0.47241 0.59150 1.25957 1.41437 1.50694 1.60074 1.86525 2.23329 2.56657 2.91944 3.10985 3.20997 3.61741 3.78022 3.99291 4.01588 4.05657 4.12532 4.23664 4.35297 4.43854 4.49006 4.55958 4.62513 4.67477 4.82745 4.89091 4.91886 5.00859 5.05683 5.08805 5.12393 5.20389 5.23246 5.33736 5.38829 5.46155 5.50539 5.69834 5.82417 6.01470 6.10636 6.52574 7.10044 7.46414 7.89104 8.73634 Molecular weight = 323.11amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.004511 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.853248 B = 6205.498215 C = 7974.442097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C 0.063 3.937 4 H 0.052 0.948 5 C -0.137 4.137 6 C -0.131 4.131 7 C 0.088 3.912 8 H 0.101 0.899 9 C 0.439 3.561 10 O -0.623 6.623 11 N -0.419 5.419 12 C -0.371 4.371 13 H 0.131 0.869 14 C 0.004 3.996 15 N -0.874 5.874 16 Si 0.983 3.017 17 H -0.273 1.273 18 H -0.291 1.291 19 H -0.253 1.253 20 C 0.234 3.766 21 C -0.127 4.127 22 C -0.101 4.101 23 C -0.057 4.057 24 Cl -0.074 7.074 25 C -0.103 4.103 26 C -0.095 4.095 27 O -0.378 6.378 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.270 0.730 38 H 0.116 0.884 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 -6.211 5.490 8.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C 0.006 3.994 4 H 0.070 0.930 5 C -0.174 4.174 6 C -0.169 4.169 7 C 0.027 3.973 8 H 0.119 0.881 9 C 0.230 3.770 10 O -0.509 6.509 11 N -0.136 5.136 12 C -0.496 4.496 13 H 0.148 0.852 14 C -0.201 4.201 15 N -0.509 5.509 16 Si 0.807 3.193 17 H -0.199 1.199 18 H -0.217 1.217 19 H -0.176 1.176 20 C 0.143 3.857 21 C -0.147 4.147 22 C -0.120 4.120 23 C -0.084 4.084 24 Cl -0.046 7.046 25 C -0.122 4.122 26 C -0.114 4.114 27 O -0.297 6.297 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.731 -5.792 5.424 7.969 hybrid contribution 0.835 0.703 -0.534 1.215 sum 1.565 -5.089 4.890 7.229 Atomic orbital electron populations 1.21726 0.96005 1.01990 1.01100 1.21653 0.96273 0.93130 1.03860 1.23354 0.95874 0.94638 0.85495 0.93026 1.23349 0.94036 0.96620 1.03421 1.23053 0.98975 0.98540 0.96353 1.22279 0.87706 0.86337 1.00967 0.88102 1.21329 0.85195 0.88362 0.82124 1.90541 1.20127 1.84415 1.55854 1.41606 1.09648 1.04140 1.58244 1.20378 0.82669 1.05842 1.40748 0.85215 1.26075 1.04279 0.95133 0.94632 1.70003 1.37052 1.15860 1.28033 0.85059 0.77356 0.77421 0.79480 1.19880 1.21651 1.17630 1.17423 0.90871 0.85217 0.92205 1.21000 1.01453 0.93094 0.99131 1.20836 0.97796 0.96138 0.97248 1.20631 1.03372 0.86119 0.98281 1.98294 1.87006 1.21856 1.97397 1.20781 1.00860 0.91522 0.99031 1.20792 0.98455 0.95957 0.96241 1.88496 1.43626 1.58710 1.38852 0.90832 0.93082 0.94738 0.90910 0.87927 0.88126 0.87517 0.87458 0.91907 0.91955 0.86615 0.83691 0.84258 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.85 71.98 0.71 -2.81 16 2 C -0.11 -2.43 5.66 30.60 0.17 -2.26 16 3 C 0.06 1.83 3.41 31.26 0.11 1.93 16 4 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 5 C -0.14 -3.14 6.57 32.05 0.21 -2.93 16 6 C -0.13 -4.04 5.19 31.86 0.17 -3.88 16 7 C 0.09 3.46 3.10 30.31 0.09 3.55 16 8 H 0.10 3.86 8.02 -2.39 -0.02 3.84 16 9 C 0.44 21.55 6.87 87.66 0.60 22.15 16 10 O -0.62 -35.14 16.48 15.73 0.26 -34.88 16 11 N -0.42 -20.56 2.66 -458.89 -1.22 -21.78 16 12 C -0.37 -17.12 8.83 84.02 0.74 -16.38 16 13 H 0.13 5.29 4.31 -2.91 -0.01 5.28 16 14 C 0.00 0.16 5.22 84.91 0.44 0.61 16 15 N -0.87 -43.30 10.23 21.65 0.22 -43.08 16 16 Si 0.98 36.55 29.58 68.60 2.03 38.58 16 17 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 18 H -0.29 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 20 C 0.23 11.51 2.25 38.22 0.09 11.60 16 21 C -0.13 -5.73 9.54 22.40 0.21 -5.52 16 22 C -0.10 -3.99 9.82 22.27 0.22 -3.77 16 23 C -0.06 -2.22 6.32 22.35 0.14 -2.08 16 24 Cl -0.07 -2.36 28.95 -2.72 -0.08 -2.44 16 25 C -0.10 -4.23 9.82 22.27 0.22 -4.01 16 26 C -0.09 -4.52 8.98 22.40 0.20 -4.32 16 27 O -0.38 -14.78 10.03 -130.19 -1.31 -16.08 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.17 8.14 -2.38 -0.02 1.16 16 30 H 0.03 0.99 7.99 -2.39 -0.02 0.97 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.89 8.06 -2.39 -0.02 1.87 16 34 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.11 2.97 6.51 -2.39 -0.02 2.95 16 36 H 0.06 2.13 7.84 -2.39 -0.02 2.12 16 37 H 0.27 13.03 8.32 -92.71 -0.77 12.26 16 38 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 39 H 0.15 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.14 4.97 8.06 -2.91 -0.02 4.95 16 41 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -62.95 352.82 5.27 -57.69 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 1.04 Total: 30.10 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 4.33 Total: -8.10 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -1.00 Total: -64.86 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -1.05 Total: -50.96 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.44 kcal Total: -62.95 5.27 -57.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592653411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.133 kcal (2) G-P(sol) polarization free energy of solvation -62.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds