Wall clock time and date at job start Tue Mar 31 2020 13:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46894 * 2 1 4 4 C 1.52994 * 109.47129 * 239.99916 * 2 1 3 5 5 C 1.53002 * 109.46765 * 119.99662 * 2 1 3 6 6 N 1.46503 * 109.47010 * 60.00253 * 5 2 1 7 7 C 1.46492 * 120.00059 * 270.00163 * 6 5 2 8 8 C 1.50701 * 109.46741 * 269.99959 * 7 6 5 9 9 H 1.07996 * 120.00500 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00133 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99757 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00236 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47081 * 59.99996 * 12 10 8 14 14 H 1.48502 * 109.47274 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47406 * 299.99935 * 12 10 8 16 16 C 1.38696 * 119.99795 * 89.99862 * 6 5 2 17 17 N 1.30242 * 126.17004 * 0.02562 * 16 6 5 18 18 N 1.26103 * 117.62309 * 179.97438 * 17 16 6 19 19 C 1.29323 * 117.96902 * 0.02562 * 18 17 16 20 20 C 1.50698 * 126.06233 * 179.97438 * 19 18 17 21 21 F 1.39894 * 109.47398 * 5.02074 * 20 19 18 22 22 F 1.39904 * 109.46826 * 125.02723 * 20 19 18 23 23 F 1.39909 * 109.46753 * 245.02190 * 20 19 18 24 24 S 1.76482 * 107.86744 * 359.97438 * 19 18 17 25 25 H 1.08990 * 109.47133 * 300.00220 * 1 2 3 26 26 H 1.09001 * 109.46481 * 60.00369 * 1 2 3 27 27 H 1.08997 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46893 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47189 * 299.99941 * 3 2 1 30 30 H 1.09001 * 109.47126 * 59.99565 * 3 2 1 31 31 H 1.08997 * 109.47530 * 299.99581 * 4 2 1 32 32 H 1.09001 * 109.47672 * 60.00444 * 4 2 1 33 33 H 1.09006 * 109.46880 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47219 * 300.00413 * 5 2 1 35 35 H 1.08999 * 109.47018 * 180.02562 * 5 2 1 36 36 H 1.08994 * 109.47426 * 29.99571 * 7 6 5 37 37 H 1.09002 * 109.47339 * 150.00246 * 7 6 5 38 38 H 0.97010 * 119.99842 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5516 -2.1024 1.2493 7 6 0.2716 -2.4268 1.8835 8 6 0.5024 -2.7747 3.3315 9 1 1.5025 -2.7566 3.7386 10 6 -0.5633 -3.1174 4.1366 11 7 -1.7812 -3.1400 3.6409 12 14 -0.2771 -3.5494 5.9312 13 1 0.3401 -2.3916 6.6267 14 1 -1.5748 -3.8781 6.5742 15 1 0.6305 -4.7213 6.0197 16 6 2.3013 -3.1030 0.6488 17 7 3.4497 -2.9508 0.0536 18 7 3.9933 -3.9765 -0.4391 19 6 3.3754 -5.1064 -0.3210 20 6 3.8550 -6.4381 -0.8384 21 9 5.1387 -6.2948 -1.3756 22 9 3.8893 -7.3616 0.2119 23 9 2.9819 -6.8941 -1.8320 24 16 1.8712 -4.8121 0.5538 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6768 -1.7489 -1.2492 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7208 -1.2494 34 1 1.6766 -0.2074 2.1393 35 1 3.1300 -0.7208 1.2496 36 1 -0.3945 -1.5665 1.8184 37 1 -0.1817 -3.2768 1.3734 38 1 -2.5310 -3.3807 4.2073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594569003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:01 Heat of formation + Delta-G solvation = -92.701693 kcal Electronic energy + Delta-G solvation = -26023.660134 eV Core-core repulsion = 21806.475730 eV Total energy + Delta-G solvation = -4217.184404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.097 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.02551 -47.56393 -47.52371 -40.63024 -38.45271 -35.11498 -32.98995 -31.19390 -28.45182 -27.46287 -27.08199 -26.83496 -25.54309 -24.02099 -22.28105 -20.35923 -19.16547 -18.82443 -18.44435 -17.75901 -17.48814 -16.94123 -15.78556 -15.46916 -14.95994 -14.57639 -14.40745 -14.32844 -14.21503 -13.96625 -13.88282 -13.68376 -13.68046 -13.23169 -13.14272 -12.76384 -12.50573 -12.27799 -12.01300 -11.86441 -11.62131 -11.44533 -11.26056 -11.03452 -10.98378 -10.58590 -10.44924 -10.40064 -10.31065 -10.06757 -9.79140 -9.72690 -9.26008 -8.77565 -7.45243 -6.39384 -4.50865 0.81497 0.97486 1.62371 2.62419 2.93897 3.13331 3.18764 3.19519 3.29613 3.73013 4.16937 4.29501 4.45852 4.89636 4.94185 4.96646 5.01884 5.23595 5.39672 5.61253 5.64915 5.77338 5.91604 5.98965 6.01046 6.06488 6.15802 6.32479 6.34242 6.40011 6.56416 6.62347 6.77322 7.22668 7.47356 7.55991 7.70757 8.53839 8.96293 9.18476 10.65989 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.005673 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.089659 B = 4934.296762 C = 7060.143144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.132 4.132 5 C 0.131 3.869 6 N -0.516 5.516 7 C 0.237 3.763 8 C -0.551 4.551 9 H 0.065 0.935 10 C 0.072 3.928 11 N -0.886 5.886 12 Si 0.901 3.099 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.273 1.273 16 C 0.334 3.666 17 N -0.360 5.360 18 N -0.149 5.149 19 C -0.193 4.193 20 C 0.573 3.427 21 F -0.161 7.161 22 F -0.169 7.169 23 F -0.170 7.170 24 S 0.132 5.868 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 1.351 -7.551 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.189 4.189 5 C 0.006 3.994 6 N -0.224 5.224 7 C 0.118 3.882 8 C -0.589 4.589 9 H 0.083 0.917 10 C -0.133 4.133 11 N -0.523 5.523 12 Si 0.728 3.272 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.198 1.198 16 C -0.036 4.036 17 N -0.215 5.215 18 N 0.009 4.991 19 C -0.477 4.477 20 C 0.514 3.486 21 F -0.143 7.143 22 F -0.150 7.150 23 F -0.152 7.152 24 S 0.369 5.631 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.114 1.619 -7.441 9.173 hybrid contribution 0.001 -0.479 1.012 1.119 sum 5.116 1.140 -6.429 8.295 Atomic orbital electron populations 1.21998 0.94153 1.02615 1.01346 1.20993 0.96375 0.95455 0.95811 1.21775 1.00991 0.94829 1.01752 1.21826 1.01665 0.99574 0.95862 1.21776 0.99832 0.79797 0.97955 1.47195 1.20600 1.03930 1.50723 1.19983 0.76924 0.98410 0.92868 1.21348 0.94534 1.49108 0.93959 0.91717 1.24909 0.94710 0.94431 0.99267 1.69893 0.98849 1.46630 1.36931 0.86487 0.77773 0.79320 0.83639 1.19911 1.20859 1.19775 1.26993 0.91903 0.92084 0.92657 1.71634 1.08566 1.19608 1.21710 1.70572 1.25087 0.93538 1.09862 1.28477 1.02144 0.98355 1.18687 1.16511 0.75145 0.81796 0.75121 1.93217 1.38981 1.95752 1.86327 1.93239 1.96236 1.68013 1.57523 1.93230 1.69569 1.89958 1.62415 1.86237 1.18917 1.03096 1.54845 0.92304 0.93199 0.91839 0.92512 0.92570 0.92508 0.93443 0.93495 0.91679 0.89096 0.89966 0.91918 0.94378 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.22 37.16 0.27 -1.77 16 2 C -0.08 -1.16 0.84 -154.51 -0.13 -1.29 16 3 C -0.14 -1.52 8.47 37.16 0.31 -1.21 16 4 C -0.13 -1.90 7.20 37.15 0.27 -1.64 16 5 C 0.13 2.08 4.67 -4.04 -0.02 2.06 16 6 N -0.52 -9.64 2.06 -175.46 -0.36 -10.00 16 7 C 0.24 5.10 4.10 -5.20 -0.02 5.07 16 8 C -0.55 -13.36 9.39 -34.44 -0.32 -13.69 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -23.01 13.29 55.43 0.74 -22.27 16 12 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.33 6.35 6.32 -87.14 -0.55 5.79 16 17 N -0.36 -6.81 9.43 31.00 0.29 -6.52 16 18 N -0.15 -2.81 11.33 33.57 0.38 -2.43 16 19 C -0.19 -3.41 7.08 -13.34 -0.09 -3.50 16 20 C 0.57 8.90 3.57 36.00 0.13 9.02 16 21 F -0.16 -2.47 17.14 2.25 0.04 -2.43 16 22 F -0.17 -2.56 17.30 2.25 0.04 -2.52 16 23 F -0.17 -2.51 17.30 2.25 0.04 -2.47 16 24 S 0.13 2.43 22.25 -107.50 -2.39 0.03 16 25 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.03 5.99 -51.93 -0.31 0.72 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.78 6.14 -51.93 -0.32 0.46 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.97 7.81 -51.93 -0.41 0.57 16 34 H 0.09 1.43 8.07 -51.93 -0.42 1.02 16 35 H 0.08 1.30 7.67 -51.93 -0.40 0.90 16 36 H 0.06 1.37 6.05 -51.93 -0.31 1.06 16 37 H 0.04 0.88 7.16 -51.93 -0.37 0.51 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -25.01 339.07 -6.01 -31.03 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.62 Total: -2.76 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.26 Total: 0.55 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 1.05 Total: -41.22 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.12 Total: -7.43 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.39 Total: 0.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -25.01 -6.01 -31.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594569003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.676 kcal (2) G-P(sol) polarization free energy of solvation -25.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds